Pregenerated sensors for RRAGA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070934Ensembl transcript IDs: ENSMUST00000091064.8
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTCATAAAGGCCGTTCTCTACTTGATAGCTaGGTAAATAGCGTCCAATAC | + |
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Preference number: 2 (lower is better) Translates to: PHPTYFSVNTTLTFHKGRSLLDS*VNSVQY Trigger: GTATTGGACGCTATTTACTCAGCTATCAAGTAGAGA...ACGGCCTTTATGAAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| 3UTR-3UTR TCA 90 bp | TTTAGTGTTAACACCACACTAACTTTTCATAAAGGCCGTCTTGAAGATCTCTACAGACTAGGGAAGAGATaGGATAGTAAGCACACGTTT | + |
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Preference number: 2 (lower is better) Translates to: FSVNTTLTFHKGRLEDLYRLGKR*DSKHTF Trigger: AAACGTGTGCTTACTATCTCATCTCTTCCCTAGTCT...GTAGAGATCTTCAAGACGGCCTTTATGAAAAGTTAGTGTGGTGTTAACACTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR GCA 90 bp | ACATACACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAAATCGGACGTGGGAGTaGTCCACGTCGATGGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: TYTHTHPHPTYFSVNTTLNRTWE*STSMVA Trigger: TGCCACCATCGACGTGGAGCACTCCCACGTCCGATT...TAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGTGTATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR GCA 90 bp | ACATACACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTACGCATGAGGAGGCTGTaGTTGGGCCCATCTACTCTT | + |
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Preference number: 4 (lower is better) Translates to: TYTHTHPHPTYFSVNTTLRMRRL*LGPSTL Trigger: AAGAGTAGATGGGCCCAAGCACAGCCTCCTCATGCG...TAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGTGTATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR TCA 90 bp | ACATACACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAAGGGATGGATGGATCTaGCATGACCACCATCACGTA | + |
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Preference number: 4 (lower is better) Translates to: TYTHTHPHPTYFSVNTTLRDGWI*HDHHHV Trigger: TACGTGATGGTGGTCATGTCAGATCCATCCATCCCT...TAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGTGTATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR TCA 90 bp | ACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTTGGATGGATCTGACATaGCCACCATCACGTACGTGT | + |
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Preference number: 4 (lower is better) Translates to: THTHPHPTYFSVNTTLTFWMDLT*PPSRTC Trigger: ACACGTACGTGATGGTGGTCATGTCAGATCCATCCA...AAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CCA 90 bp | CCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTCATAAAGGCCGTGCGTCAGGTGAATTCTaGAGGATGGCTTCCAGACAC | + |
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Preference number: 4 (lower is better) Translates to: PHPTYFSVNTTLTFHKGRASGEF*RMASRH Trigger: GTGTCTGGAAGCCATCCTCCAGAATTCACCTGACGC...ACGGCCTTTATGAAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR GCA 90 bp | ACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTATCTTCTCAAAGCGGTaGACATCTCGCTGCTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: THTHPHPTYFSVNTTLTFIFSKR*TSRCSL Trigger: CAAAGAGCAGCGAGATGTGCACCGCTTTGAGAAGAT...AAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR GCA 90 bp | ACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTAATTCCTCACTTCCATaGTCTGGAAAGAAGCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: THTHPHPTYFSVNTTLTFNSSLP*SGKKRP Trigger: TGGCCGCTTCTTTCCAGAGCATGGAAGTGAGGAATT...AAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CCA 90 bp | ACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTCCAGGCAGAAGATTTTaGCGTCAGGTGAATTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: THTHPHPTYFSVNTTLTFPGRRF*RQVNSG Trigger: TCCAGAATTCACCTGACGCCAAAATCTTCTGCCTGG...AAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CCA 90 bp | TTTAGTGTTAACACCACACTAACTTTTCATAAAGGCCGTCTTGAAGATCTCTACCCCAAGAATCGGACGTaGGAGTGCTCCACGTCGATG | + |
|
Preference number: 4 (lower is better) Translates to: FSVNTTLTFHKGRLEDLYPKNRT*ECSTSM Trigger: CATCGACGTGGAGCACTCCCACGTCCGATTCTTGGG...GTAGAGATCTTCAAGACGGCCTTTATGAAAAGTTAGTGTGGTGTTAACACTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CCA 90 bp | ACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTCTCACTTCCATGCTCTaGAAAGAAGCGGCCAATTTA | + |
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Preference number: 4 (lower is better) Translates to: THTHPHPTYFSVNTTLTFLTSML*KEAANL Trigger: TAAATTGGCCGCTTCTTTCCAGAGCATGGAAGTGAG...AAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR GCA 90 bp | ACATACACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAGCGCGCAATATAATTTaGAAAGATGATCGACCTCAT | + |
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Preference number: 4 (lower is better) Translates to: TYTHTHPHPTYFSVNTTLARNII*KDDRPH Trigger: ATGAGGTCGATCATCTTTGCAAATTATATTGCGCGC...TAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGTGTATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR TCA 90 bp | TTTAGTGTTAACACCACACTAACTTTTCATAAAGGCCGTCTTGAAGATCTCTACGATTTTGGCGTCAGGTaGATTCTGGAGGATGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: FSVNTTLTFHKGRLEDLYDFGVR*ILEDGF Trigger: GAAGCCATCCTCCAGAATTCACCTGACGCCAAAATC...GTAGAGATCTTCAAGACGGCCTTTATGAAAAGTTAGTGTGGTGTTAACACTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CCA 90 bp | TTTAGTGTTAACACCACACTAACTTTTCATAAAGGCCGTCTTGAAGATCTCTACGTGAATTCTGGAGGATaGCTTCCAGACACGATTGGT | + |
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Preference number: 4 (lower is better) Translates to: FSVNTTLTFHKGRLEDLYVNSGG*LPDTIG Trigger: ACCAATCGTGTCTGGAAGCCATCCTCCAGAATTCAC...GTAGAGATCTTCAAGACGGCCTTTATGAAAAGTTAGTGTGGTGTTAACACTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CAA 90 bp | ACATACACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAACCAGGCAGAAGATTTaGGCGTCAGGTGAATTCTGG | + |
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Preference number: 5 (lower is better) Translates to: TYTHTHPHPTYFSVNTTLTRQKI*ASGEFW Trigger: CCAGAATTCACCTGACGCCAAAATCTTCTGCCTGGT...TAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGTGTATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CAA 90 bp | CCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTCATAAAGGCCGTACATTACGGAAGATGTaGTCCCGCTGGCTGGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: PHPTYFSVNTTLTFHKGRTLRKM*SRWLVK Trigger: CTTCACCAGCCAGCGGGACAACATCTTCCGTAATGT...ACGGCCTTTATGAAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CAA 90 bp | ACACACACCCACCCACACCCCACCTACTTTAGTGTTAACACCACACTAACTTTTGGCTTCCAGACACGATaGGTAATAATGCATATCTTT | + |
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Preference number: 5 (lower is better) Translates to: THTHPHPTYFSVNTTLTFGFQTR*VIMHIF Trigger: AAAGATATGCATTATTACCAATCGTGTCTGGAAGCC...AAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGGGTGTGGGTGGGTGTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS-3UTR CAA 90 bp | TTTAGTGTTAACACCACACTAACTTTTCATAAAGGCCGTCTTGAAGATCTCTACAAAAATCAGGTCACGTaGATCTTCCTGAACCAGATC | + |
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Preference number: 5 (lower is better) Translates to: FSVNTTLTFHKGRLEDLYKNQVT*IFLNQI Trigger: GATCTGGTTCAGGAAGATCAACGTGACCTGATTTTT...GTAGAGATCTTCAAGACGGCCTTTATGAAAAGTTAGTGTGGTGTTAACACTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS CCA 72 bp | CACAGGTTCAGCACCAGGTTCCCCAAGAATCGGACGTaGGAGTGCTCCACGTCGATGGTGGCACCCAGGCGC | + |
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Preference number: 6 (lower is better) Translates to: HRFSTRFPKNRT*ECSTSMVAPRR Trigger: GCGCCTGGGTGCCACCATCGACGTGGAGCACTCCCACGTCCGATTCTTGGGGAACCTGGTGCTGAACCTGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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| CDS GCA 72 bp | TTCAGCACCAGGTTCCCCAAGAATCGGACGTGGGAGTaGTCCACGTCGATGGTGGCACCCAGGCGCCTAGTG | + |
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Preference number: 6 (lower is better) Translates to: FSTRFPKNRTWE*STSMVAPRRLV Trigger: CACTAGGCGCCTGGGTGCCACCATCGACGTGGAGCACTCCCACGTCCGATTCTTGGGGAACCTGGTGCTGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091064.8 |
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