Pregenerated sensors for RPUSD4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032044Ensembl transcript IDs: ENSMUST00000034543.5, ENSMUST00000144582.2
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCTGCTGCCTCCTAGCCTCTCCTCCATTTTGGCAAAGTGACCTTTaGAGGAGTCTTCCAGCAGGCTTTCCCACATTACAGCCCGACTGC | + |
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Preference number: 1 (lower is better) Translates to: VCCLLASPPFWQSDL*RSLPAGFPTLQPDC Trigger: GCAGTCGGGCTGTAATGTGGGAAAGCCTGCTGGAAGACTCCTCCAAAGGTCACTTTGCCAAAATGGAGGAGAGGCTAGGAGGCAGCAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR GCA 90 bp | AACACAGATTTCATCCTTTCGTTCTCCTGTGCTAGTTCAGTCTGCTaGCTCCTAGCCTCTCCTCCATTTTGGCAAAGTGACCTTTGGAGG | + |
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Preference number: 1 (lower is better) Translates to: NTDFILSFSCASSVC*LLASPPFWQSDLWR Trigger: CCTCCAAAGGTCACTTTGCCAAAATGGAGGAGAGGCTAGGAGGCAGCAGACTGAACTAGCACAGGAGAACGAAAGGATGAAATCTGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR GCA 90 bp | CTGAACACAGATTTCATCCTTTCGTTCTCCTGTGCTAGTTCAGTCTaGTGCCTCCTAGCCTCTCCTCCATTTTGGCAAAGTGACCTTTGG | + |
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Preference number: 1 (lower is better) Translates to: LNTDFILSFSCASSV*CLLASPPFWQSDLW Trigger: CCAAAGGTCACTTTGCCAAAATGGAGGAGAGGCTAGGAGGCAGCAGACTGAACTAGCACAGGAGAACGAAAGGATGAAATCTGTGTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR TCA 90 bp | TTTCCAAGGGAGCATCCTGATAGCTCCGCTTTCCTTCCTGTTGGATaGAGACAGTTCCTGAACACAGATTTCATCCTTTCGTTCTCCTGT | + |
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Preference number: 1 (lower is better) Translates to: FPREHPDSSAFLPVG*RQFLNTDFILSFSC Trigger: ACAGGAGAACGAAAGGATGAAATCTGTGTTCAGGAACTGTCTTCATCCAACAGGAAGGAAAGCGGAGCTATCAGGATGCTCCCTTGGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR GCA 90 bp | AGCCAGCAGGAGGATGAGGACACACATCCAGTCACTTTTCTCACATaGCCTGACTATTTCACTCTCTTCTTTCCATACTTTCCAACGAAC | + |
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Preference number: 1 (lower is better) Translates to: SQQEDEDTHPVTFLT*PDYFTLFFPYFPTN Trigger: GTTCGTTGGAAAGTATGGAAAGAAGAGAGTGAAATAGTCAGGGCATGTGAGAAAAGTGACTGGATGTGTGTCCTCATCCTCCTGCTGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR TCA 90 bp | CTGGGTTCTCTCAGCCTACTAAACATTCAGTTTATCACTAAAGAATaGTGTTTCCATCAAGAAGACAGCCAGCAGGAGGATGAGGACACA | + |
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Preference number: 1 (lower is better) Translates to: LGSLSLLNIQFITKE*CFHQEDSQQEDEDT Trigger: TGTGTCCTCATCCTCCTGCTGGCTGTCTTCTTGATGGAAACATCATTCTTTAGTGATAAACTGAATGTTTAGTAGGCTGAGAGAACCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR CCA 90 bp | ACGAACTCCAACTTTCTTCAATTCAGCCCAACTATGAGTTGTATCTaGTTCTTGTCATCTGTTCCAAGTGAGAAGTTAGCAGGATCCATG | + |
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Preference number: 1 (lower is better) Translates to: TNSNFLQFSPTMSCI*FLSSVPSEKLAGSM Trigger: CATGGATCCTGCTAACTTCTCACTTGGAACAGATGACAAGAACCAGATACAACTCATAGTTGGGCTGAATTGAAGAAAGTTGGAGTTCGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR-3UTR CCA 90 bp | TGCTTTTGGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTATGTTGGCAAAGTGACCTTTaGAGGAGTCTTCCAGCAGGC | + |
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Preference number: 2 (lower is better) Translates to: CFWADVPSTDFRPATHLCWQSDL*RSLPAG Trigger: GCCTGCTGGAAGACTCCTCCAAAGGTCACTTTGCCA...ACATAAGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCCAAAAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR-3UTR CCA 90 bp | AGACAGTTTGCTTTTGGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCCGCTTTCCTTCCTGTTaGATGAAGACAGTTCCTGAA | + |
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Preference number: 2 (lower is better) Translates to: RQFAFGLMSHPLTSALPLRFPSC*MKTVPE Trigger: TTCAGGAACTGTCTTCATCCAACAGGAAGGAAAGCG...GAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCCAAAAGCAAACTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR-3UTR TCA 90 bp | TGCTGCCTCCTAGCCTCTCCTCCATTTTGGCAAAGTGACCTTTGGAGGAGTCTTGTCATCTGTTCCAAGTaGGAAGTTAGCAGGATCCAT | + |
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Preference number: 2 (lower is better) Translates to: CCLLASPPFWQSDLWRSLVICSK*EVSRIH Trigger: ATGGATCCTGCTAACTTCTCACTTGGAACAGATGAC...AAGACTCCTCCAAAGGTCACTTTGCCAAAATGGAGGAGAGGCTAGGAGGCAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR-3UTR CCA 90 bp | TGCTGCCTCCTAGCCTCTCCTCCATTTTGGCAAAGTGACCTTTGGAGGAGTCTTTCAATTTATCCCACCTaGTTCTTGTCATCTGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: CCLLASPPFWQSDLWRSLSIYPT*FLSSVP Trigger: TGGAACAGATGACAAGAACCAGGTGGGATAAATTGA...AAGACTCCTCCAAAGGTCACTTTGCCAAAATGGAGGAGAGGCTAGGAGGCAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR-3UTR TCA 90 bp | GATGAGGACACACATCCAGTCACTTTTCTCACATGCCCTGACTATTTCACTCTCAATTCAGCCCAACTATaGGTTGTATCTGGTTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: DEDTHPVTFLTCPDYFTLNSAQL*VVSGSC Trigger: ACAAGAACCAGATACAACTCATAGTTGGGCTGAATT...GAGAGTGAAATAGTCAGGGCATGTGAGAAAAGTGACTGGATGTGTGTCCTCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR-3UTR TCA 90 bp | TTCACTCTCTTCTTTCCATACTTTCCAACGAACTCCAACTTTCTTCAATTCAGCGTCATCTGTTCCAAGTaGGAAGTTAGCAGGATCCAT | + |
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Preference number: 2 (lower is better) Translates to: FTLFFPYFPTNSNFLQFSVICSK*EVSRIH Trigger: ATGGATCCTGCTAACTTCTCACTTGGAACAGATGAC...GCTGAATTGAAGAAAGTTGGAGTTCGTTGGAAAGTATGGAAAGAAGAGAGTGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR-3UTR TCA 90 bp | AGTTTATCACTAAAGAATGATGTTTCCATCAAGAAGACAGCCAGCAGGAGGATGTTTTCTCACATGCCCTaGCTATTTCACTCTCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: SLSLKNDVSIKKTASRRMFSHMP*LFHSLL Trigger: AAGAAGAGAGTGAAATAGTCAGGGCATGTGAGAAAA...CATCCTCCTGCTGGCTGTCTTCTTGATGGAAACATCATTCTTTAGTGATAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR-3UTR CCA 90 bp | TCACTCTCTTCTTTCCATACTTTCCAACGAACTCCAACTTTCTTCAATTCAGCCACTATGAGTTGTATCTaGTTCTTGTCATCTGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: SLSSFHTFQRTPTFFNSATMSCI*FLSSVP Trigger: TGGAACAGATGACAAGAACCAGATACAACTCATAGT...GGCTGAATTGAAGAAAGTTGGAGTTCGTTGGAAAGTATGGAAAGAAGAGAGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR TCA 72 bp | ATGCGGCAAGTTCTGAGGTTGTGCCAACCTAGGCAGTaGTCTTCCTCTGAACATCAGGGAGCTAGTCACACT | + |
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Preference number: 3 (lower is better) Translates to: MRQVLRLCQPRQ*SSSEHQGASHT Trigger: AGTGTGACTAGCTCCCTGATGTTCAGAGGAAGATCACTGCCTAGGTTGGCACAACCTCAGAACTTGCCGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR CCA 72 bp | CTCCTAGCCTCTCCTCCATTTTGGCAAAGTGACCTTTaGAGGAGTCTTCCAGCAGGCTTTCCCACATTACAG | + |
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Preference number: 3 (lower is better) Translates to: LLASPPFWQSDL*RSLPAGFPTLQ Trigger: CTGTAATGTGGGAAAGCCTGCTGGAAGACTCCTCCAAAGGTCACTTTGCCAAAATGGAGGAGAGGCTAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR-3UTR CAA 90 bp | GAAGACAGCCAGCAGGAGGATGAGGACACACATCCAGTCACTTTTCTCACATGCCAGCCCAACTATGAGTaGTATCTGGTTCTTGTCATC | + |
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Preference number: 3 (lower is better) Translates to: EDSQQEDEDTHPVTFLTCQPNYE*YLVLVI Trigger: GATGACAAGAACCAGATACAACTCATAGTTGGGCTG...GCATGTGAGAAAAGTGACTGGATGTGTGTCCTCATCCTCCTGCTGGCTGTCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR TCA 72 bp | ATGATGTTTCCATCAAGAAGACAGCCAGCAGGAGGATaGGGACACACATCCAGTCACTTTTCTCACATGCCC | + |
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Preference number: 3 (lower is better) Translates to: MMFPSRRQPAGG*GHTSSHFSHMP Trigger: GGGCATGTGAGAAAAGTGACTGGATGTGTGTCCTCATCCTCCTGCTGGCTGTCTTCTTGATGGAAACATCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR TCA 72 bp | GAGCATCCTGATAGCTCCGCTTTCCTTCCTGTTGGATaGAGACAGTTCCTGAACACAGATTTCATCCTTTCG | + |
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Preference number: 3 (lower is better) Translates to: EHPDSSAFLPVG*RQFLNTDFILS Trigger: CGAAAGGATGAAATCTGTGTTCAGGAACTGTCTTCATCCAACAGGAAGGAAAGCGGAGCTATCAGGATGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR-3UTR CAA 90 bp | TTAGCTGCCTGTCATTTACCTCACGCAAACAACCCTTTCACAGGTTCACTGCTAAAAATCCCTGGCTCCTaGATACATGTTCATCCAAGC | + |
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Preference number: 3 (lower is better) Translates to: LAACHLPHANNPFTGSLLKIPGS*IHVHPS Trigger: GCTTGGATGAACATGTATCAAGGAGCCAGGGATTTT...TAGCAGTGAACCTGTGAAAGGGTTGTTTGCGTGAGGTAAATGACAGGCAGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR TCA 72 bp | CAACGAACTCCAACTTTCTTCAATTCAGCCCAACTATaGGTTGTATCTGGTTCTTGTCATCTGTTCCAAGTG | + |
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Preference number: 3 (lower is better) Translates to: QRTPTFFNSAQL*VVSGSCHLFQV Trigger: CACTTGGAACAGATGACAAGAACCAGATACAACTCATAGTTGGGCTGAATTGAAGAAAGTTGGAGTTCGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR TCA 72 bp | CTCAGCCTACTAAACATTCAGTTTATCACTAAAGAATaGTGTTTCCATCAAGAAGACAGCCAGCAGGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: LSLLNIQFITKE*CFHQEDSQQED Trigger: ATCCTCCTGCTGGCTGTCTTCTTGATGGAAACATCATTCTTTAGTGATAAACTGAATGTTTAGTAGGCTGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| 3UTR TCA 72 bp | TATGAGTTGTATCTGGTTCTTGTCATCTGTTCCAAGTaGGAAGTTAGCAGGATCCATGAAGTAAATACAGCA | + |
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Preference number: 3 (lower is better) Translates to: YELYLVLVICSK*EVSRIHEVNTA Trigger: TGCTGTATTTACTTCATGGATCCTGCTAACTTCTCACTTGGAACAGATGACAAGAACCAGATACAACTCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| CDS-3UTR TCA 90 bp | GGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTATGTTAGCTGCCCAGAGCAGGCAGGATaGGCTGCCTGGCGTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: GLMSHPLTSALPLTYVSCPEQAG*AAWRAG Trigger: ACCTGCACGCCAGGCAGCTCATCCTGCCTGCTCTGG...GCAGCTAACATAAGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR TCA 90 bp | GGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTATGTTAGCTGCTTCTCTGCCAATCTCTaGGCATTCAGGGGCCTAGAG | + |
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Preference number: 4 (lower is better) Translates to: GLMSHPLTSALPLTYVSCFSANL*AFRGLE Trigger: CTCTAGGCCCCTGAATGCTCAGAGATTGGCAGAGAA...GCAGCTAACATAAGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | GGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTATGTTAGCTGCGGCTCGGAGCTTCTCTaGCAATCTCTGAGCATTCAG | + |
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Preference number: 4 (lower is better) Translates to: GLMSHPLTSALPLTYVSCGSELL*QSLSIQ Trigger: CTGAATGCTCAGAGATTGGCAGAGAAGCTCCGAGCC...GCAGCTAACATAAGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CCA 90 bp | TTCCAAGGGAGCATCCTGATAGCTCCGCTTTCCTTCCTGTTGGATGAAGACAGTGCAGAGCTGGACTCCTaGGCCACCATGGACAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: FQGSILIAPLSFLLDEDSAELDS*ATMDRE Trigger: CTCCCTGTCCATGGTGGCCCAGGAGTCCAGCTCTGC...ACTGTCTTCATCCAACAGGAAGGAAAGCGGAGCTATCAGGATGCTCCCTTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CCA 90 bp | GGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTATGTTAGCTGCATTCCAGTAACAGGCTaGAGCTCCACAAGGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: GLMSHPLTSALPLTYVSCIPVTG*SSTRAE Trigger: CTCTGCCCTTGTGGAGCTCCAGCCTGTTACTGGAAT...GCAGCTAACATAAGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR TCA 90 bp | GGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTATGTTAGCTGCTCTGCCTTGTGGCCATaGAGCATCTTTGCCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: GLMSHPLTSALPLTYVSCSALWP*SIFAKM Trigger: CATCTTGGCAAAGATGCTTCATGGCCACAAGGCAGA...GCAGCTAACATAAGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CCA 90 bp | CATTTACCTCACGCAAACAACCCTTTCACAGGTTCACTGCTAGGGCAGGACAGCTCACTGATGCAGAGCTaGACTCCTGGGCCACCATGG | + |
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Preference number: 4 (lower is better) Translates to: HLPHANNPFTGSLLGQDSSLMQS*TPGPPW Trigger: CCATGGTGGCCCAGGAGTCCAGCTCTGCATCAGTGA...GCTGTCCTGCCCTAGCAGTGAACCTGTGAAAGGGTTGTTTGCGTGAGGTAAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | TGCTTTTGGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTATGTCTAAGCACCTGGTACTaGGTTACAGCAACGTGCGCA | + |
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Preference number: 4 (lower is better) Translates to: CFWADVPSTDFRPATHLCLSTWY*VTATCA Trigger: TGCGCACGTTGCTGTAACGCAGTACCAGGTGCTTAG...ACATAAGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCCAAAAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | CAGTTTGCTTTTGGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTCGGAGCAGGGAACGTaGAAAGAAGTGAGGAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: QFAFGLMSHPLTSALPLTSEQGT*KEVRKL Trigger: AAGCTTCCTCACTTCTTTGCACGTTCCCTGCTCCGA...AGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCCAAAAGCAAACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CCA 90 bp | AGACAGTTTGCTTTTGGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCTTTTGCTCTTGTTTCTaGGCTCGGAGCTTCTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: RQFAFGLMSHPLTSALPLFCSCF*ARSFSA Trigger: GGCAGAGAAGCTCCGAGCCCAGAAACAAGAGCAAAA...GAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCCAAAAGCAAACTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CCA 90 bp | AAAGTGACCTTTGGAGGAGTCTTCCAGCAGGCTTTCCCACATTACAGCCCGACTGCGCTGCTAAGCACCTaGTACTGCGTTACAGCAACG | + |
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Preference number: 4 (lower is better) Translates to: KVTFGGVFQQAFPHYSPTALLST*YCVTAT Trigger: CGTTGCTGTAACGCAGTACCAGGTGCTTAGCAGCGC...AGTCGGGCTGTAATGTGGGAAAGCCTGCTGGAAGACTCCTCCAAAGGTCACTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR TCA 90 bp | TTCCAAGGGAGCATCCTGATAGCTCCGCTTTCCTTCCTGTTGGATGAAGACAGTTGGGCAGTACATCACTaGTGCAGAGCTGGACTCCTG | + |
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Preference number: 4 (lower is better) Translates to: FQGSILIAPLSFLLDEDSWAVHH*CRAGLL Trigger: CAGGAGTCCAGCTCTGCATCAGTGATGTACTGCCCA...ACTGTCTTCATCCAACAGGAAGGAAAGCGGAGCTATCAGGATGCTCCCTTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR TCA 90 bp | CTTTCGTTCTCCTGTGCTAGTTCAGTCTGCTGCCTCCTAGCCTCTCCTCCATTTGAACGTGCAAAGAAGTaGGGAAGCTTGCAGGTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LSFSCASSVCCLLASPPFERAKK*GSLQVR Trigger: CCTGACCTGCAAGCTTCCTCACTTCTTTGCACGTTC...AAATGGAGGAGAGGCTAGGAGGCAGCAGACTGAACTAGCACAGGAGAACGAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | TGCTGCCTCCTAGCCTCTCCTCCATTTTGGCAAAGTGACCTTTGGAGGAGTCTTCTCCTGGACTTGATGTaGCATGTCCTTCTCCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: CCLLASPPFWQSDLWRSLLLDLM*HVLLPS Trigger: GCTTGGGAGAAGGACATGGCACATCAAGTCCAGGAG...AAGACTCCTCCAAAGGTCACTTTGCCAAAATGGAGGAGAGGCTAGGAGGCAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | TGGCAAAGTGACCTTTGGAGGAGTCTTCCAGCAGGCTTTCCCACATTACAGCCCAGAAGTGAGGAAGCTTaGAGGTCAGGAGGAGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: WQSDLWRSLPAGFPTLQPRSEEA*RSGGVP Trigger: AGGAACTCCTCCTGACCTGCAAGCTTCCTCACTTCT...GGGCTGTAATGTGGGAAAGCCTGCTGGAAGACTCCTCCAAAGGTCACTTTGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CCA 90 bp | AGACAGTTTGCTTTTGGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCTCTTTGTCCAGACGGTaGCACAGATGCAAAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: RQFAFGLMSHPLTSALPLSLSRR*HRCKGS Trigger: AGAACCTTTGCATCTGTGCCACCGTCTGGACAAAGA...GAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCCAAAAGCAAACTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR TCA 90 bp | GCAAACAACCCTTTCACAGGTTCACTGCTAGGGCAGGACAGCACCCATACTCTACAGTCTGAGTACTTGTaGTCCCCAAGGATTGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: ANNPFTGSLLGQDSTHTLQSEYL*SPRIGQ Trigger: TTGCCCAATCCTTGGGGATCACAAGTACTCAGACTG...TAGAGTATGGGTGCTGTCCTGCCCTAGCAGTGAACCTGTGAAAGGGTTGTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR TCA 90 bp | TGCTGCCTCCTAGCCTCTCCTCCATTTTGGCAAAGTGACCTTTGGAGGAGTCTTCAACCTAGTCCAGTCTaGGTACTTGTGATCCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: CCLLASPPFWQSDLWRSLQPSPV*VLVIPK Trigger: CTTGGGGATCACAAGTACTCAGACTGGACTAGGTTG...AAGACTCCTCCAAAGGTCACTTTGCCAAAATGGAGGAGAGGCTAGGAGGCAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | TTAGCTGCCTGTCATTTACCTCACGCAAACAACCCTTTCACAGGTTCACTGCTAGATATCCACGACTCCTaGCGAGGGCAAGGGAACACG | + |
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Preference number: 4 (lower is better) Translates to: LAACHLPHANNPFTGSLLDIHDS*RGQGNT Trigger: CGTGTTCCCTTGCCCTCGGCAGGAGTCGTGGATATC...TAGCAGTGAACCTGTGAAAGGGTTGTTTGCGTGAGGTAAATGACAGGCAGCTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CCA 90 bp | TTCCAAGGGAGCATCCTGATAGCTCCGCTTTCCTTCCTGTTGGATGAAGACAGTGTGATCCCCAAGGATTaGGCAATCCAGCCCAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: FQGSILIAPLSFLLDEDSVIPKD*AIQPKG Trigger: TCCTTTGGGCTGGATTGCCCAATCCTTGGGGATCAC...ACTGTCTTCATCCAACAGGAAGGAAAGCGGAGCTATCAGGATGCTCCCTTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | CTTGATACATGTTCATCCAAGCCATCTTTCCAAGGGAGCATCCTGATAGCTCCGAGACGGTGGCACAGATaGAAAGGTTCTGCCTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: LDTCSSKPSFQGSILIAPRRWHR*KGSALW Trigger: CCACAAGGCAGAACCTTTGCATCTGTGCCACCGTCT...CGGAGCTATCAGGATGCTCCCTTGGAAAGATGGCTTGGATGAACATGTATCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CCA 90 bp | CTTTCGTTCTCCTGTGCTAGTTCAGTCTGCTGCCTCCTAGCCTCTCCTCCATTTTACTTCTTTTCCACCTaGCGGGTTCTAAATAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LSFSCASSVCCLLASPPFYFFST*RVLNSS Trigger: GGAGCTATTTAGAACCCGCCAGGTGGAAAAGAAGTA...AAATGGAGGAGAGGCTAGGAGGCAGCAGACTGAACTAGCACAGGAGAACGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | AAGAATGATGTTTCCATCAAGAAGACAGCCAGCAGGAGGATGAGGACACACATCTCGGAGCAGGGAACGTaGAAAGAAGTGAGGAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: KNDVSIKKTASRRMRTHISEQGT*KEVRKL Trigger: AAGCTTCCTCACTTCTTTGCACGTTCCCTGCTCCGA...GATGTGTGTCCTCATCCTCCTGCTGGCTGTCTTCTTGATGGAAACATCATTCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| CDS-3UTR CCA 90 bp | CTTTCGTTCTCCTGTGCTAGTTCAGTCTGCTGCCTCCTAGCCTCTCCTCCATTTAAACCATTACACCTGTaGTTTCTTTGTCCAGACGGT | + |
|
Preference number: 4 (lower is better) Translates to: LSFSCASSVCCLLASPPFKPLHL*FLCPDG Trigger: ACCGTCTGGACAAAGAAACCACAGGTGTAATGGTTT...AAATGGAGGAGAGGCTAGGAGGCAGCAGACTGAACTAGCACAGGAGAACGAAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR TCA 90 bp | AGACAGTTCCTGAACACAGATTTCATCCTTTCGTTCTCCTGTGCTAGTTCAGTCAATAGCTCCTGGACTTaGTGTGCCATGTCCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: RQFLNTDFILSFSCASSVNSSWT*CAMSFS Trigger: GGAGAAGGACATGGCACATCAAGTCCAGGAGCTATT...GACTGAACTAGCACAGGAGAACGAAAGGATGAAATCTGTGTTCAGGAACTGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | AGACAGTTCCTGAACACAGATTTCATCCTTTCGTTCTCCTGTGCTAGTTCAGTCACTTCCTTTGCCTTTTaGTCTTGTTTCTGGGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: RQFLNTDFILSFSCASSVTSFAF*SCFWAR Trigger: CCGAGCCCAGAAACAAGAGCAAAAGGCAAAGGAAGT...GACTGAACTAGCACAGGAGAACGAAAGGATGAAATCTGTGTTCAGGAACTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR GCA 90 bp | AGACAGTTCCTGAACACAGATTTCATCCTTTCGTTCTCCTGTGCTAGTTCAGTCGCCATGAAGCATCTTTaGCAAGATGGGCAGTACATC | + |
|
Preference number: 4 (lower is better) Translates to: RQFLNTDFILSFSCASSVAMKHL*QDGQYI Trigger: GATGTACTGCCCATCTTGGCAAAGATGCTTCATGGC...GACTGAACTAGCACAGGAGAACGAAAGGATGAAATCTGTGTTCAGGAACTGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| 3UTR CAA 72 bp | AGCACCCATACTCTAGTTGACAAAATCCCTGGCTCCTaGATACATGTTCATCCAAGCCATCTTTCCAAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: STHTLVDKIPGS*IHVHPSHLSKG Trigger: TCCCTTGGAAAGATGGCTTGGATGAACATGTATCAAGGAGCCAGGGATTTTGTCAACTAGAGTATGGGTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CCA 90 bp | GGCTGGAGCTCCACAAGGGCAGAGGAGGAAGCGCTGCTAAGCACCTaGTACTGCGTTACAGCAACGTGCGCATCGCGGCTGGCCCGTACC | + |
|
Preference number: 5 (lower is better) Translates to: GWSSTRAEEEALLST*YCVTATCASRLART Trigger: GGTACGGGCCAGCCGCGATGCGCACGTTGCTGTAACGCAGTACCAGGTGCTTAGCAGCGCTTCCTCCTCTGCCCTTGTGGAGCTCCAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 90 bp | GCGTCATCTTGTGGTGTTGCTGAGGCCCCTGCACTTCTTTCTCCTTaGTGGGGATATCCACGACTCCTGCCGAGGGCAAGGGAACACGCA | + |
|
Preference number: 5 (lower is better) Translates to: ASSCGVAEAPALLSP*WGYPRLLPRAREHA Trigger: TGCGTGTTCCCTTGCCCTCGGCAGGAGTCGTGGATATCCCCATCAAGGAGAAAGAAGTGCAGGGGCCTCAGCAACACCACAAGATGACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 90 bp | GAGGAGGAAGCGCTGCTAAGCACCTGGTACTGCGTTACAGCAACGTaGGCATCGCGGCTGGCCCGTACCTTTACCATTTTCCCATTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: EEEALLSTWYCVTAT*ASRLARTFTIFPLS Trigger: GGACAATGGGAAAATGGTAAAGGTACGGGCCAGCCGCGATGCGCACGTTGCTGTAACGCAGTACCAGGTGCTTAGCAGCGCTTCCTCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 90 bp | CTAAACCCAGTCGGAGCAGGGAACGTGCAAAGAAGTGAGGAAGCTTaGAGGTCAGGAGGAGTTCCTCTGTCCTGGAGCCCAGAGCAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: LNPVGAGNVQRSEEA*RSGGVPLSWSPEQA Trigger: TGCCTGCTCTGGGCTCCAGGACAGAGGAACTCCTCCTGACCTGCAAGCTTCCTCACTTCTTTGCACGTTCCCTGCTCCGACTGGGTTTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 90 bp | CGCTGCAGCTGCTGTGTGAATCGCACTAGTTCCTGCACTCTCCGCTaGACGGGGTTTGTAGGCACCCGCACTTCCTTTGCCTTTTGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: RCSCCVNRTSSCTLR*TGFVGTRTSFAFCS Trigger: AGAGCAAAAGGCAAAGGAAGTGCGGGTGCCTACAAACCCCGTTCAGCGGAGAGTGCAGGAACTAGTGCGATTCACACAGCAGCTGCAGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 90 bp | CCTTGTGGCCATGAAGCATCTTTGCCAAGATGGGCAGTACATCACTaGTGCAGAGCTGGACTCCTGGGCCACCATGGACAGGGAGACCAT | + |
|
Preference number: 5 (lower is better) Translates to: PCGHEASLPRWAVHH*CRAGLLGHHGQGDH Trigger: ATGGTCTCCCTGTCCATGGTGGCCCAGGAGTCCAGCTCTGCATCAGTGATGTACTGCCCATCTTGGCAAAGATGCTTCATGGCCACAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CCA 90 bp | GCTGGCCCGTACCTTTACCATTTTCCCATTGTCCAGACGGTAACTTaGGGACAGCGTCATCTTGTGGTGTTGCTGAGGCCCCTGCACTTC | + |
|
Preference number: 5 (lower is better) Translates to: AGPYLYHFPIVQTVT*GQRHLVVLLRPLHF Trigger: GAAGTGCAGGGGCCTCAGCAACACCACAAGATGACGCTGTCCCCAAGTTACCGTCTGGACAATGGGAAAATGGTAAAGGTACGGGCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 90 bp | TTTGGCATATCTAAACCCAGTCGGAGCAGGGAACGTGCAAAGAAGTaGGGAAGCTTGCAGGTCAGGAGGAGTTCCTCTGTCCTGGAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: FGISKPSRSRERAKK*GSLQVRRSSSVLEP Trigger: GGGCTCCAGGACAGAGGAACTCCTCCTGACCTGCAAGCTTCCTCACTTCTTTGCACGTTCCCTGCTCCGACTGGGTTTAGATATGCCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 90 bp | TGGTGGAGAATCCTTCGGCTCAGTTCCTTAGCAAGCACATTGGGGTaGACTCGCTGCAGCTGCTGTGTGAATCGCACTAGTTCCTGCACT | + |
|
Preference number: 5 (lower is better) Translates to: WWRILRLSSLASTLG*TRCSCCVNRTSSCT Trigger: AGTGCAGGAACTAGTGCGATTCACACAGCAGCTGCAGCGAGTTCACCCCAATGTGCTTGCTAAGGAACTGAGCCGAAGGATTCTCCACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 90 bp | CACTTCCTTTGCCTTTTGCTCTTGTTTCTGGGCTCGGAGCTTCTCTaGCAATCTCTGAGCATTCAGGGGCCTAGAGGAAGTAGCGCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: HFLCLLLLFLGSELL*QSLSIQGPRGSSAG Trigger: TCCAGCGCTACTTCCTCTAGGCCCCTGAATGCTCAGAGATTGGCAGAGAAGCTCCGAGCCCAGAAACAAGAGCAAAAGGCAAAGGAAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 90 bp | GTGGCACAGATGCAAAGGTTCTGCCTTGTGGCCATGAAGCATCTTTaGCAAGATGGGCAGTACATCACTGATGCAGAGCTGGACTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: VAQMQRFCLVAMKHL*QDGQYITDAELDSW Trigger: CCAGGAGTCCAGCTCTGCATCAGTGATGTACTGCCCATCTTGGCAAAGATGCTTCATGGCCACAAGGCAGAACCTTTGCATCTGTGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | TGGCAAAGTGACCTTTGGAGGAGTCTTCCAGCAGGCTTTCCCACATTACAGCCCACACCTGTGGTTTCTTaGTCCAGACGGTGGCACAGA | + |
|
Preference number: 5 (lower is better) Translates to: WQSDLWRSLPAGFPTLQPTPVVS*SRRWHR Trigger: TCTGTGCCACCGTCTGGACAAAGAAACCACAGGTGT...GGGCTGTAATGTGGGAAAGCCTGCTGGAAGACTCCTCCAAAGGTCACTTTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | GCAAACAACCCTTTCACAGGTTCACTGCTAGGGCAGGACAGCACCCATACTCTATGTGATCCCCAAGGATaGGGCAATCCAGCCCAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: ANNPFTGSLLGQDSTHTLCDPQG*GNPAQR Trigger: CCTTTGGGCTGGATTGCCCAATCCTTGGGGATCACA...TAGAGTATGGGTGCTGTCCTGCCCTAGCAGTGAACCTGTGAAAGGGTTGTTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 90 bp | TTGTCCAGACGGTGGCACAGATGCAAAGGTTCTGCCTTGTGGCCATaGAGCATCTTTGCCAAGATGGGCAGTACATCACTGATGCAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: LSRRWHRCKGSALWP*SIFAKMGSTSLMQS Trigger: GCTCTGCATCAGTGATGTACTGCCCATCTTGGCAAAGATGCTTCATGGCCACAAGGCAGAACCTTTGCATCTGTGCCACCGTCTGGACAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | CTTTCGTTCTCCTGTGCTAGTTCAGTCTGCTGCCTCCTAGCCTCTCCTCCATTTATGACCACGAGGTCGTaGTCCTGGTGGAGAATCCTT | + |
|
Preference number: 5 (lower is better) Translates to: LSFSCASSVCCLLASPPFMTTRS*SWWRIL Trigger: AAGGATTCTCCACCAGGACAACGACCTCGTGGTCAT...AAATGGAGGAGAGGCTAGGAGGCAGCAGACTGAACTAGCACAGGAGAACGAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | TTAGCTGCCTGTCATTTACCTCACGCAAACAACCCTTTCACAGGTTCACTGCTAGGATGTAGCGGGCCTTaGACTGCTGTAGCCCCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: LAACHLPHANNPFTGSLLGCSGP*TAVAPA Trigger: AGCTGGGGCTACAGCAGTCAAAGGCCCGCTACATCC...TAGCAGTGAACCTGTGAAAGGGTTGTTTGCGTGAGGTAAATGACAGGCAGCTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | GCAAACAACCCTTTCACAGGTTCACTGCTAGGGCAGGACAGCACCCATACTCTACACTTCCTTTGCCTTTaGCTCTTGTTTCTGGGCTCG | + |
|
Preference number: 5 (lower is better) Translates to: ANNPFTGSLLGQDSTHTLHFLCL*LLFLGS Trigger: CGAGCCCAGAAACAAGAGCAAAAGGCAAAGGAAGTG...TAGAGTATGGGTGCTGTCCTGCCCTAGCAGTGAACCTGTGAAAGGGTTGTTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | GCAAACAACCCTTTCACAGGTTCACTGCTAGGGCAGGACAGCACCCATACTCTAGCACCCGCACTTCCTTaGCCTTTTGCTCTTGTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: ANNPFTGSLLGQDSTHTLAPALP*PFALVS Trigger: AGAAACAAGAGCAAAAGGCAAAGGAAGTGCGGGTGC...TAGAGTATGGGTGCTGTCCTGCCCTAGCAGTGAACCTGTGAAAGGGTTGTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | TGCTTTTGGGCTGATGTCCCATCCACTGACTTCCGCCCTGCCACTCACTTATGTTGCACTTCTTTCTCCTaGATGGGGATATCCACGACT | + |
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Preference number: 5 (lower is better) Translates to: CFWADVPSTDFRPATHLCCTSFS*MGISTT Trigger: AGTCGTGGATATCCCCATCAAGGAGAAAGAAGTGCA...ACATAAGTGAGTGGCAGGGCGGAAGTCAGTGGATGGGACATCAGCCCAAAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CCA 90 bp | CTTGATGTGCCATGTCCTTCTCCCAAGCCAAAACCATTACACCTGTaGTTTCTTTGTCCAGACGGTGGCACAGATGCAAAGGTTCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: LDVPCPSPKPKPLHL*FLCPDGGTDAKVLP Trigger: AGGCAGAACCTTTGCATCTGTGCCACCGTCTGGACAAAGAAACCACAGGTGTAATGGTTTTGGCTTGGGAGAAGGACATGGCACATCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | TTCCAAGGGAGCATCCTGATAGCTCCGCTTTCCTTCCTGTTGGATGAAGACAGTGGCCATGAAGCATCTTaGCCAAGATGGGCAGTACAT | + |
|
Preference number: 5 (lower is better) Translates to: FQGSILIAPLSFLLDEDSGHEAS*PRWAVH Trigger: ATGTACTGCCCATCTTGGCAAAGATGCTTCATGGCC...ACTGTCTTCATCCAACAGGAAGGAAAGCGGAGCTATCAGGATGCTCCCTTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | AGACAGTTCCTGAACACAGATTTCATCCTTTCGTTCTCCTGTGCTAGTTCAGTCCGTCATCTTGTGGTGTaGCTGAGGCCCCTGCACTTC | + |
|
Preference number: 5 (lower is better) Translates to: RQFLNTDFILSFSCASSVRHLVV*LRPLHF Trigger: GAAGTGCAGGGGCCTCAGCAACACCACAAGATGACG...GACTGAACTAGCACAGGAGAACGAAAGGATGAAATCTGTGTTCAGGAACTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 90 bp | CAGTACTTCTTTTCCACCTGGCGGGTTCTAAATAGCTCCTGGACTTaGTGTGCCATGTCCTTCTCCCAAGCCAAAACCATTACACCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: QYFFSTWRVLNSSWT*CAMSFSQAKTITPV Trigger: CACAGGTGTAATGGTTTTGGCTTGGGAGAAGGACATGGCACATCAAGTCCAGGAGCTATTTAGAACCCGCCAGGTGGAAAAGAAGTACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | CATTTACCTCACGCAAACAACCCTTTCACAGGTTCACTGCTAGGGCAGGACAGCCTTATTGCCTCGGCTTaGATCCTGATTTGGCATATC | + |
|
Preference number: 5 (lower is better) Translates to: HLPHANNPFTGSLLGQDSLIASA*ILIWHI Trigger: GATATGCCAAATCAGGATCAAAGCCGAGGCAATAAG...GCTGTCCTGCCCTAGCAGTGAACCTGTGAAAGGGTTGTTTGCGTGAGGTAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS-3UTR CAA 90 bp | CAGCAGGAGGATGAGGACACACATCCAGTCACTTTTCTCACATGCCCTGACTATCTTATTGCCTCGGCTTaGATCCTGATTTGGCATATC | + |
|
Preference number: 5 (lower is better) Translates to: QQEDEDTHPVTFLTCPDYLIASA*ILIWHI Trigger: GATATGCCAAATCAGGATCAAAGCCGAGGCAATAAG...ATAGTCAGGGCATGTGAGAAAAGTGACTGGATGTGTGTCCTCATCCTCCTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144582.2 |
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| CDS CAA 72 bp | GCCTGGCGTGCAGGTGAAGCGGGATGTAGCGGGCCTTaGACTGCTGTAGCCCCAGCTTCTTCAGTGTGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: AWRAGEAGCSGP*TAVAPASSVCQ Trigger: CTGGCACACTGAAGAAGCTGGGGCTACAGCAGTCAAAGGCCCGCTACATCCCGCTTCACCTGCACGCCAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CCA 72 bp | TCCACAAGGGCAGAGGAGGAAGCGCTGCTAAGCACCTaGTACTGCGTTACAGCAACGTGCGCATCGCGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: STRAEEEALLST*YCVTATCASRL Trigger: CAGCCGCGATGCGCACGTTGCTGTAACGCAGTACCAGGTGCTTAGCAGCGCTTCCTCCTCTGCCCTTGTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 72 bp | CACTTCTTTCTCCTTGATGGGGATATCCACGACTCCTaGCGAGGGCAAGGGAACACGCACCGTGATGGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: HFFLLDGDIHDS*RGQGNTHRDGP Trigger: TGGGCCATCACGGTGCGTGTTCCCTTGCCCTCGGCAGGAGTCGTGGATATCCCCATCAAGGAGAAAGAAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 72 bp | GCGCTGCTAAGCACCTGGTACTGCGTTACAGCAACGTaGGCATCGCGGCTGGCCCGTACCTTTACCATTTTC | + |
|
Preference number: 6 (lower is better) Translates to: ALLSTWYCVTAT*ASRLARTFTIF Trigger: GAAAATGGTAAAGGTACGGGCCAGCCGCGATGCGCACGTTGCTGTAACGCAGTACCAGGTGCTTAGCAGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 72 bp | TGCTGTGTGAATCGCACTAGTTCCTGCACTCTCCGCTaGACGGGGTTTGTAGGCACCCGCACTTCCTTTGCC | + |
|
Preference number: 6 (lower is better) Translates to: CCVNRTSSCTLR*TGFVGTRTSFA Trigger: GGCAAAGGAAGTGCGGGTGCCTACAAACCCCGTTCAGCGGAGAGTGCAGGAACTAGTGCGATTCACACAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 72 bp | CAAGCACATTGGGGTGAACTCGCTGCAGCTGCTGTGTaGATCGCACTAGTTCCTGCACTCTCCGCTGAACGG | + |
|
Preference number: 6 (lower is better) Translates to: QAHWGELAAAAV*IALVPALSAER Trigger: CCGTTCAGCGGAGAGTGCAGGAACTAGTGCGATTCACACAGCAGCTGCAGCGAGTTCACCCCAATGTGCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 72 bp | CCGCTGAACGGGGTTTGTAGGCACCCGCACTTCCTTTaGCTTTTGCTCTTGTTTCTGGGCTCGGAGCTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: PLNGVCRHPHFL*LLLLFLGSELL Trigger: GAGAAGCTCCGAGCCCAGAAACAAGAGCAAAAGGCAAAGGAAGTGCGGGTGCCTACAAACCCCGTTCAGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CCA 72 bp | CCTGGTACTGCGTTACAGCAACGTGCGCATCGCGGCTaGCCCGTACCTTTACCATTTTCCCATTGTCCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: PGTALQQRAHRG*PVPLPFSHCPD Trigger: GTCTGGACAATGGGAAAATGGTAAAGGTACGGGCCAGCCGCGATGCGCACGTTGCTGTAACGCAGTACCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CAA 90 bp | TCTCCGCTGAACGGGGTTTGTAGGCACCCGCACTTCCTTTGCCTTTaGCTCTTGTTTCTGGGCTCGGAGCTTCTCTGCCAATCTCTGAGC | + |
|
Preference number: 6 (lower is better) Translates to: SPLNGVCRHPHFLCL*LLFLGSELLCQSLS Trigger: GCTCAGAGATTGGCAGAGAAGCTCCGAGCCCAGAAACAAGAGCAAAAGGCAAAGGAAGTGCGGGTGCCTACAAACCCCGTTCAGCGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 72 bp | TCTTGTTTCTGGGCTCGGAGCTTCTCTGCCAATCTCTaGGCATTCAGGGGCCTAGAGGAAGTAGCGCTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: SCFWARSFSANL*AFRGLEEVALE Trigger: TTCCAGCGCTACTTCCTCTAGGCCCCTGAATGCTCAGAGATTGGCAGAGAAGCTCCGAGCCCAGAAACAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 72 bp | CATGAAGCATCTTTGCCAAGATGGGCAGTACATCACTaGTGCAGAGCTGGACTCCTGGGCCACCATGGACAG | + |
|
Preference number: 6 (lower is better) Translates to: HEASLPRWAVHH*CRAGLLGHHGQ Trigger: CTGTCCATGGTGGCCCAGGAGTCCAGCTCTGCATCAGTGATGTACTGCCCATCTTGGCAAAGATGCTTCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 72 bp | TCTAAACCCAGTCGGAGCAGGGAACGTGCAAAGAAGTaGGGAAGCTTGCAGGTCAGGAGGAGTTCCTCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: SKPSRSRERAKK*GSLQVRRSSSV Trigger: GACAGAGGAACTCCTCCTGACCTGCAAGCTTCCTCACTTCTTTGCACGTTCCCTGCTCCGACTGGGTTTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 72 bp | ACGGGGTTTGTAGGCACCCGCACTTCCTTTGCCTTTTaGTCTTGTTTCTGGGCTCGGAGCTTCTCTGCCAAT | + |
|
Preference number: 6 (lower is better) Translates to: TGFVGTRTSFAF*SCFWARSFSAN Trigger: ATTGGCAGAGAAGCTCCGAGCCCAGAAACAAGAGCAAAAGGCAAAGGAAGTGCGGGTGCCTACAAACCCCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CAA 72 bp | AACGGGGTTTGTAGGCACCCGCACTTCCTTTGCCTTTaGCTCTTGTTTCTGGGCTCGGAGCTTCTCTGCCAA | + |
|
Preference number: 6 (lower is better) Translates to: NGVCRHPHFLCL*LLFLGSELLCQ Trigger: TTGGCAGAGAAGCTCCGAGCCCAGAAACAAGAGCAAAAGGCAAAGGAAGTGCGGGTGCCTACAAACCCCGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 72 bp | ATCCTTCGGCTCAGTTCCTTAGCAAGCACATTGGGGTaGACTCGCTGCAGCTGCTGTGTGAATCGCACTAGT | + |
|
Preference number: 6 (lower is better) Translates to: ILRLSSLASTLG*TRCSCCVNRTS Trigger: ACTAGTGCGATTCACACAGCAGCTGCAGCGAGTTCACCCCAATGTGCTTGCTAAGGAACTGAGCCGAAGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 72 bp | TGCCTTTTGCTCTTGTTTCTGGGCTCGGAGCTTCTCTaGCAATCTCTGAGCATTCAGGGGCCTAGAGGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: CLLLLFLGSELL*QSLSIQGPRGS Trigger: ACTTCCTCTAGGCCCCTGAATGCTCAGAGATTGGCAGAGAAGCTCCGAGCCCAGAAACAAGAGCAAAAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CAA 90 bp | GCCATGTCCTTCTCCCAAGCCAAAACCATTACACCTGTGGTTTCTTaGTCCAGACGGTGGCACAGATGCAAAGGTTCTGCCTTGTGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: AMSFSQAKTITPVVS*SRRWHRCKGSALWP Trigger: TGGCCACAAGGCAGAACCTTTGCATCTGTGCCACCGTCTGGACAAAGAAACCACAGGTGTAATGGTTTTGGCTTGGGAGAAGGACATGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CAA 90 bp | GTGCTTCCACATGCCTGGCCTTATTGCCTCGGCTTTGATCCTGATTaGGCATATCTAAACCCAGTCGGAGCAGGGAACGTGCAAAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: VLPHAWPYCLGFDPD*AYLNPVGAGNVQRS Trigger: ACTTCTTTGCACGTTCCCTGCTCCGACTGGGTTTAGATATGCCAAATCAGGATCAAAGCCGAGGCAATAAGGCCAGGCATGTGGAAGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034543.5 ENSMUST00000144582.2 |
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| CDS TCA 72 bp | AGCAGAAAGTTTCTGAGGGGCCAACCTAGTCCAGTCTaGGTACTTGTGATCCCCAAGGATTGGGCAATCCAG | + |
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Preference number: 6 (lower is better) Translates to: SRKFLRGQPSPV*VLVIPKDWAIQ Trigger: CTGGATTGCCCAATCCTTGGGGATCACAAGTACTCAGACTGGACTAGGTTGGCCCCTCAGAAACTTTCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CCA 72 bp | TACCTTTACCATTTTCCCATTGTCCAGACGGTAACTTaGGGACAGCGTCATCTTGTGGTGTTGCTGAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: YLYHFPIVQTVT*GQRHLVVLLRP Trigger: GGGCCTCAGCAACACCACAAGATGACGCTGTCCCCAAGTTACCGTCTGGACAATGGGAAAATGGTAAAGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CAA 72 bp | GTACCTTTACCATTTTCCCATTGTCCAGACGGTAACTaGGGGACAGCGTCATCTTGTGGTGTTGCTGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: VPLPFSHCPDGN*GTASSCGVAEA Trigger: GGCCTCAGCAACACCACAAGATGACGCTGTCCCCAAGTTACCGTCTGGACAATGGGAAAATGGTAAAGGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS GCA 72 bp | ATGCAAAGGTTCTGCCTTGTGGCCATGAAGCATCTTTaGCAAGATGGGCAGTACATCACTGATGCAGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: MQRFCLVAMKHL*QDGQYITDAEL Trigger: CAGCTCTGCATCAGTGATGTACTGCCCATCTTGGCAAAGATGCTTCATGGCCACAAGGCAGAACCTTTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS CCA 72 bp | CCATGTCCTTCTCCCAAGCCAAAACCATTACACCTGTaGTTTCTTTGTCCAGACGGTGGCACAGATGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: PCPSPKPKPLHL*FLCPDGGTDAK Trigger: CTTTGCATCTGTGCCACCGTCTGGACAAAGAAACCACAGGTGTAATGGTTTTGGCTTGGGAGAAGGACATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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| CDS TCA 72 bp | TTTTCCACCTGGCGGGTTCTAAATAGCTCCTGGACTTaGTGTGCCATGTCCTTCTCCCAAGCCAAAACCATT | + |
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Preference number: 6 (lower is better) Translates to: FSTWRVLNSSWT*CAMSFSQAKTI Trigger: AATGGTTTTGGCTTGGGAGAAGGACATGGCACATCAAGTCCAGGAGCTATTTAGAACCCGCCAGGTGGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034543.5 |
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