RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPSA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032518

Ensembl transcript IDs: ENSMUST00000035105.7, ENSMUST00000217356.2

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTATCCTGGAACTCTCTGTAGACCAGGCCAGAAATCCACCTGCCTaGCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCGCCAATGCCAG +
Preference number: 1 (lower is better)
Translates to: AILELSVDQARNPPA*LPSAGIKGVRRQCQ
Trigger: CTGGCATTGGCGGCGCACACCTTTAATCCCAGCACTTGGGAGTCAGGCAGGTGGATTTCTGGCCTGGTCTACAGAGAGTTCCAGGATAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR TCA 90 bp CAGCCCAAGTGCTATTCACAGGCCCCCACCCAACACTCAAATTCCTaGATCCTTCACTTCTGCAATGCCACCTGTCACGGCAGCTCAGGG +
Preference number: 1 (lower is better)
Translates to: QPKCYSQAPTQHSNS*ILHFCNATCHGSSG
Trigger: CCCTGAGCTGCCGTGACAGGTGGCATTGCAGAAGTGAAGGATTCAGGAATTTGAGTGTTGGGTGGGGGCCTGTGAATAGCACTTGGGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR GCA 90 bp CCAGAAATCCACCTGCCTGACTCCCAAGTGCTGGGATTAAAGGTGTaGGCCGCCAATGCCAGGCCTAACAAACTTTTTAGAAAAGCTAGA +
Preference number: 1 (lower is better)
Translates to: PEIHLPDSQVLGLKV*AANARPNKLFRKAR
Trigger: TCTAGCTTTTCTAAAAAGTTTGTTAGGCCTGGCATTGGCGGCGCACACCTTTAATCCCAGCACTTGGGAGTCAGGCAGGTGGATTTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR CCA 90 bp CACTTCTGCAATGCCACCTGTCACGGCAGCTCAGGGAATTCCATCTaGCAATCCCAACCACTTACTGTGAATTCACACCATCAGACTATC +
Preference number: 1 (lower is better)
Translates to: HFCNATCHGSSGNSI*QSQPLTVNSHHQTI
Trigger: GATAGTCTGATGGTGTGAATTCACAGTAAGTGGTTGGGATTGCCAGATGGAATTCCCTGAGCTGCCGTGACAGGTGGCATTGCAGAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR-3UTR TCA 90 bp CTTCTGCAATGCCACCTGTCACGGCAGCTCAGGGAATTCCATCTGGCAATCCCAAACACCTCACCTAGATaGCACATGAAGTCTCCAGAG +
Preference number: 2 (lower is better)
Translates to: LLQCHLSRQLREFHLAIPNTSPR*HMKSPE
Trigger: CTCTGGAGACTTCATGTGTCATCTAGGTGAGGTGTT...TGGGATTGCCAGATGGAATTCCCTGAGCTGCCGTGACAGGTGGCATTGCAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR-3UTR GCA 90 bp TGCAATGCCACCTGTCACGGCAGCTCAGGGAATTCCATCTGGCAATCCCAACCAAATCCAGGTACAGTCTaGAGTGAGGACCATAAGACA +
Preference number: 2 (lower is better)
Translates to: CNATCHGSSGNSIWQSQPNPGTV*SEDHKT
Trigger: TGTCTTATGGTCCTCACTGCAGACTGTACCTGGATT...TGGTTGGGATTGCCAGATGGAATTCCCTGAGCTGCCGTGACAGGTGGCATTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR-3UTR GCA 90 bp GCAATGCCACCTGTCACGGCAGCTCAGGGAATTCCATCTGGCAATCCCAACCACTGTTGTATAGCCAAATaGCAATCCAGGTACAGTCTG +
Preference number: 2 (lower is better)
Translates to: AMPPVTAAQGIPSGNPNHCCIAK*QSRYSL
Trigger: CAGACTGTACCTGGATTGGCATTTGGCTATACAACA...GTGGTTGGGATTGCCAGATGGAATTCCCTGAGCTGCCGTGACAGGTGGCATTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR-3UTR GCA 90 bp CAGGTACTGTCCTTGAATTCCAGGACATTCAGGGGCAGCAGTCTCCCCTCCCAGATGTCAGTAGGACCATaGCTCTGTTGTATAGCCAAA +
Preference number: 2 (lower is better)
Translates to: QVLSLNSRTFRGSSLPSQMSVGP*LCCIAK
Trigger: TTTGGCTATACAACAGAGGCATGGTCCTACTGACAT...CTGGGAGGGGAGACTGCTGCCCCTGAATGTCCTGGAATTCAAGGACAGTACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR-3UTR TCA 90 bp GCATTAACTTTGTTCCTGGGACACAAAATCCCAATCTGGCCAGGTTCAGTGACAAGGATCTATGAGGCATaGCAGAACAGAGACCCTGTG +
Preference number: 2 (lower is better)
Translates to: ALTLFLGHKIPIWPGSVTRIYEA*QNRDPV
Trigger: CACAGGGTCTCTGTTCTGTCATGCCTCATAGATCCT...TGTCACTGAACCTGGCCAGATTGGGATTTTGTGTCCCAGGAACAAAGTTAATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR CAA 90 bp TCAGACTATCAGTCTCACCAAGGCATTAACTTTTTAGCATTAACTTaGTTCCTGGGACACAAAATCCCAATCTGGCCAGGTTCAGTGACA +
Preference number: 2 (lower is better)
Translates to: SDYQSHQGINFLALT*FLGHKIPIWPGSVT
Trigger: TGTCACTGAACCTGGCCAGATTGGGATTTTGTGTCCCAGGAACAAAGTTAATGCTAAAAAGTTAATGCCTTGGTGAGACTGATAGTCTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR TCA 72 bp GAACTCTCTGTAGACCAGGCCAGAAATCCACCTGCCTaGCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCGC +
Preference number: 3 (lower is better)
Translates to: ELSVDQARNPPA*LPSAGIKGVRR
Trigger: GCGGCGCACACCTTTAATCCCAGCACTTGGGAGTCAGGCAGGTGGATTTCTGGCCTGGTCTACAGAGAGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR TCA 72 bp TGCTATTCACAGGCCCCCACCCAACACTCAAATTCCTaGATCCTTCACTTCTGCAATGCCACCTGTCACGGC +
Preference number: 3 (lower is better)
Translates to: CYSQAPTQHSNS*ILHFCNATCHG
Trigger: GCCGTGACAGGTGGCATTGCAGAAGTGAAGGATTCAGGAATTTGAGTGTTGGGTGGGGGCCTGTGAATAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR GCA 72 bp CACCTGCCTGACTCCCAAGTGCTGGGATTAAAGGTGTaGGCCGCCAATGCCAGGCCTAACAAACTTTTTAGA +
Preference number: 3 (lower is better)
Translates to: HLPDSQVLGLKV*AANARPNKLFR
Trigger: TCTAAAAAGTTTGTTAGGCCTGGCATTGGCGGCGCACACCTTTAATCCCAGCACTTGGGAGTCAGGCAGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR GCA 72 bp CCAACACTCAAATTCCTGAATCCTTCACTTCTGCAATaGCACCTGTCACGGCAGCTCAGGGAATTCCATCTG +
Preference number: 3 (lower is better)
Translates to: PTLKFLNPSLLQ*HLSRQLREFHL
Trigger: CAGATGGAATTCCCTGAGCTGCCGTGACAGGTGGCATTGCAGAAGTGAAGGATTCAGGAATTTGAGTGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR CCA 72 bp AATGCCACCTGTCACGGCAGCTCAGGGAATTCCATCTaGCAATCCCAACCACTTACTGTGAATTCACACCAT +
Preference number: 3 (lower is better)
Translates to: NATCHGSSGNSI*QSQPLTVNSHH
Trigger: ATGGTGTGAATTCACAGTAAGTGGTTGGGATTGCCAGATGGAATTCCCTGAGCTGCCGTGACAGGTGGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR TCA 72 bp CAGGGAATTCCATCTGGCAATCCCAACCACTTACTGTaGATTCACACCATCAGACTATCAGTCTCACCAAGG +
Preference number: 3 (lower is better)
Translates to: QGIPSGNPNHLL*IHTIRLSVSPR
Trigger: CCTTGGTGAGACTGATAGTCTGATGGTGTGAATTCACAGTAAGTGGTTGGGATTGCCAGATGGAATTCCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
CDS-3UTR CCA 90 bp CAGGGGTGCTCACGGGAGATAGTACCTCGCATGCGGAGTACTTCCCTGGCCAGCCCACTTCTAGTCACCTaGCCAGTGTTCCTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: QGCSREIVPRMRSTSLASPLLVT*PVFLEE
Trigger: CTCCTCCAGGAACACTGGCCAGGTGACTAGAAGTGG...GCTGGCCAGGGAAGTACTCCGCATGCGAGGTACTATCTCCCGTGAGCACCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217356.2
CDS-3UTR TCA 90 bp CTTCTGCAATGCCACCTGTCACGGCAGCTCAGGGAATTCCATCTGGCAATCCCACGCTGTGGGAGCTGCTaGCCAATCCTCAGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: LLQCHLSRQLREFHLAIPRCGSC*PILSGW
Trigger: CCAGCCACTGAGGATTGGTCAGCAGCTCCCACAGCG...TGGGATTGCCAGATGGAATTCCCTGAGCTGCCGTGACAGGTGGCATTGCAGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
CDS-3UTR CCA 90 bp CTTGAATTCCAGGACATTCAGGGGCAGCAGTCTCCCCTCCCAGCCCAAGTGCTACAGTGGCCTGCGCTGTaGGAGCTGCTGACCAATCCT +
Preference number: 4 (lower is better)
Translates to: LEFQDIQGQQSPLPAQVLQWPAL*ELLTNP
Trigger: AGGATTGGTCAGCAGCTCCCACAGCGCAGGCCACTG...TAGCACTTGGGCTGGGAGGGGAGACTGCTGCCCCTGAATGTCCTGGAATTCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
CDS-3UTR TCA 90 bp CAGGGGTGCTCACGGGAGATAGTACCTCGCATGCGGAGTACTTCCCTGGCCAGCGCTTTGAAGGGAGATTaGGTCAGCATTATCATGCAT +
Preference number: 4 (lower is better)
Translates to: QGCSREIVPRMRSTSLASALKGD*VSIIMH
Trigger: ATGCATGATAATGCTGACTCAATCTCCCTTCAAAGC...GCTGGCCAGGGAAGTACTCCGCATGCGAGGTACTATCTCCCGTGAGCACCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217356.2
CDS-3UTR GCA 90 bp ATTCCTGAATCCTTCACTTCTGCAATGCCACCTGTCACGGCAGCTCAGGGAATTCTCAGTGGCTGGCTGTaGACTCCAGTCTTCCGTGGG +
Preference number: 4 (lower is better)
Translates to: IPESFTSAMPPVTAAQGILSGWL*TPVFRG
Trigger: CCCACGGAAGACTGGAGTGCACAGCCAGCCACTGAG...AATTCCCTGAGCTGCCGTGACAGGTGGCATTGCAGAAGTGAAGGATTCAGGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
CDS-3UTR GCA 90 bp CAGGGGTGCTCACGGGAGATAGTACCTCGCATGCGGAGTACTTCCCTGGCCAGCGAGTCAGCATTATCATaGATGCTTCACGAGGAAACT +
Preference number: 4 (lower is better)
Translates to: QGCSREIVPRMRSTSLASESALS*MLHEET
Trigger: AGTTTCCTCGTGAAGCATGCATGATAATGCTGACTC...GCTGGCCAGGGAAGTACTCCGCATGCGAGGTACTATCTCCCGTGAGCACCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217356.2
CDS-3UTR CCA 90 bp AACACTCAAATTCCTGAATCCTTCACTTCTGCAATGCCACCTGTCACGGCAGCTCTCCAACCCACTCAGTaGCCTGCGCTGTGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: NTQIPESFTSAMPPVTAALQPTQ*PALWEL
Trigger: CAGCTCCCACAGCGCAGGCCACTGAGTGGGTTGGAG...AGCTGCCGTGACAGGTGGCATTGCAGAAGTGAAGGATTCAGGAATTTGAGTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
CDS-3UTR CCA 90 bp GCATTAACTTTGTTCCTGGGACACAAAATCCCAATCTGGCCAGGTTCAGTGACACTGACCAATCCTCAGTaGCTGGCTGTGCACTCCAGT +
Preference number: 4 (lower is better)
Translates to: ALTLFLGHKIPIWPGSVTLTNPQ*LAVHSS
Trigger: ACTGGAGTGCACAGCCAGCCACTGAGGATTGGTCAG...TGTCACTGAACCTGGCCAGATTGGGATTTTGTGTCCCAGGAACAAAGTTAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
3UTR CAA 72 bp CAGTCTCACCAAGGCATTAACTTTTTAGCATTAACTTaGTTCCTGGGACACAAAATCCCAATCTGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: QSHQGINFLALT*FLGHKIPIWPG
Trigger: ACCTGGCCAGATTGGGATTTTGTGTCCCAGGAACAAAGTTAATGCTAAAAAGTTAATGCCTTGGTGAGACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035105.7
CDS-3UTR CAA 90 bp CAGGGGTGCTCACGGGAGATAGTACCTCGCATGCGGAGTACTTCCCTGGCCAGCCGCTTTGAAGGGAGATaGAGTCAGCATTATCATGCA +
Preference number: 5 (lower is better)
Translates to: QGCSREIVPRMRSTSLASRFEGR*SQHYHA
Trigger: TGCATGATAATGCTGACTCAATCTCCCTTCAAAGCG...GCTGGCCAGGGAAGTACTCCGCATGCGAGGTACTATCTCCCGTGAGCACCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217356.2
CDS TCA 72 bp GTCAGCATTATCATGCATGCTTCACGAGGAAACTGCTaGTACCCACTTCTAGTCACCTGGCCAGTGTTCCTG +
Preference number: 6 (lower is better)
Translates to: VSIIMHASRGNC*YPLLVTWPVFL
Trigger: CAGGAACACTGGCCAGGTGACTAGAAGTGGGTATCAGCAGTTTCCTCGTGAAGCATGCATGATAATGCTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217356.2
CDS GCA 72 bp CGCTTTGAAGGGAGATTGAGTCAGCATTATCATGCATaGTTCACGAGGAAACTGCTGATACCCACTTCTAGT +
Preference number: 6 (lower is better)
Translates to: RFEGRLSQHYHA*FTRKLLIPTSS
Trigger: ACTAGAAGTGGGTATCAGCAGTTTCCTCGTGAAGCATGCATGATAATGCTGACTCAATCTCCCTTCAAAGCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217356.2