Pregenerated sensors for RPS9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006333Ensembl transcript IDs: ENSMUST00000108623.8, ENSMUST00000126562.8, ENSMUST00000146927.2
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTGCCTGGCAGACACCTTCACAAGGTGTACGGCTTGAGCCGCAGTaGCCCTTGCGCTGGGCTATGGGGAAACAAGGCTGTCCCCAGTCC | + |
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Preference number: 1 (lower is better) Translates to: SAWQTPSQGVRLEPQ*PLRWAMGKQGCPQS Trigger: GGACTGGGGACAGCCTTGTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTACACCTTGTGAAGGTGTCTGCCAGGCACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR TCA 90 bp | CAGCTGCTTGAGTGCCTGGCAGACACCTTCACAAGGTGTACGGCTTaGGCCGCAGTGACCCTTGCGCTGGGCTATGGGGAAACAAGGCTG | + |
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Preference number: 1 (lower is better) Translates to: QLLECLADTFTRCTA*AAVTLALGYGETRL Trigger: CAGCCTTGTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTACACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR-3UTR TCA 90 bp | TCCAGCTGCTTGAGTGCCTGGCAGACACCTTCACAAGGTGTACGGCTTGAGCCGCGGCTTGAGCCGCAGTaGCCCTTGCGCTGGGCTATG | + |
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Preference number: 2 (lower is better) Translates to: SSCLSAWQTPSQGVRLEPRLEPQ*PLRWAM Trigger: CATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCG...CGGCTCAAGCCGTACACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCTGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR-3UTR TCA 90 bp | TACGGCTTGAGCCGCAGTGACCCTTGCGCTGGGCTATGGGGAAACAAGGCTGTCTGCAGGGCACGATTCTaGACCCTCAAGGGTAAGCTC | + |
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Preference number: 2 (lower is better) Translates to: YGLSRSDPCAGLWGNKAVCRARF*TLKGKL Trigger: GAGCTTACCCTTGAGGGTTCAGAATCGTGCCCTGCA...GACAGCCTTGTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR-3UTR CCA 90 bp | TACGGCTTGAGCCGCAGTGACCCTTGCGCTGGGCTATGGGGAAACAAGGCTGTCAGCTGCTTGAGTGCCTaGCAGACACCTTCACAAGGT | + |
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Preference number: 2 (lower is better) Translates to: YGLSRSDPCAGLWGNKAVSCLSA*QTPSQG Trigger: ACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCT...GACAGCCTTGTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGTCCCCCATAAGCTGTTTGCAGGGCACGATTCTGAACCCTCAAGGGTAAGCTGCAGGGCACGATTCTaGACCCTCAAGGGTAAGCTC | + |
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Preference number: 2 (lower is better) Translates to: PVPHKLFAGHDSEPSRVSCRARF*TLKGKL Trigger: GAGCTTACCCTTGAGGGTTCAGAATCGTGCCCTGCA...GCTTACCCTTGAGGGTTCAGAATCGTGCCCTGCAAACAGCTTATGGGGGACTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR-3UTR TCA 90 bp | ACAATCCTCCAGTTCAGCCAAGTATTAATTAATCCTCTTCCTCATCATCACCAGCGGCTTGAGCCGCAGTaGCCCTTGCGCTGGGCTATG | + |
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Preference number: 2 (lower is better) Translates to: TILQFSQVLINPLPHHHQRLEPQ*PLRWAM Trigger: CATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCG...CTGGTGATGATGAGGAAGAGGATTAATTAATACTTGGCTGAACTGGAGGATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000146927.2 |
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| 3UTR-3UTR GCA 90 bp | CTCCAGTTCAGCCAAGTATTAATTAATCCTCTTCCTCATCATCACCAGCTCCAGAGCCGCAGTGACCCTTaGGCTGGGCTATGGGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: LQFSQVLINPLPHHHQLQSRSDP*AGLWGN Trigger: GTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCT...CTGGAGCTGGTGATGATGAGGAAGAGGATTAATTAATACTTGGCTGAACTGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000146927.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGAAAACAAGAGTGCCCATACTAATGCTTTGATTTGCTTCCTGTCCACATTGAGCCGCAGTGACCCTTaGGCTGGGCTATGGGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: KENKSAHTNALICFLSTLSRSDP*AGLWGN Trigger: GTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCT...CAATGTGGACAGGAAGCAAATCAAAGCATTAGTATGGGCACTCTTGTTTTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108623.8 |
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| 3UTR-3UTR GCA 90 bp | GAAGGGTTAACGAGCATGCAATTTCATTTACCCCAGTCACTTCAGACAGGTGCAGTCAGCTCCAAAGGCTaGACAGGAGATAGAATGGCA | + |
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Preference number: 2 (lower is better) Translates to: EGLTSMQFHLPQSLQTGAVSSKG*TGDRMA Trigger: TGCCATTCTATCTCCTGTGCAGCCTTTGGAGCTGAC...TGCACCTGTCTGAAGTGACTGGGGTAAATGAAATTGCATGCTCGTTAACCCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126562.8 |
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| 3UTR-3UTR CCA 90 bp | AGGGTTAACGAGCATGCAATTTCATTTACCCCAGTCACTTCAGACAGGTGCATTAGCTGCTTGAGTGCCTaGCAGACACCTTCACAAGGT | + |
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Preference number: 2 (lower is better) Translates to: RVNEHAISFTPVTSDRCISCLSA*QTPSQG Trigger: ACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCT...AATGCACCTGTCTGAAGTGACTGGGGTAAATGAAATTGCATGCTCGTTAACCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| 3UTR-3UTR TCA 90 bp | AGGGTTAACGAGCATGCAATTTCATTTACCCCAGTCACTTCAGACAGGTGCATTTTGTCACCTCAACATTaGCTCCAATCTCCCTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: RVNEHAISFTPVTSDRCILSPQH*LQSPSR Trigger: CCTGGAGGGAGATTGGAGTCAATGTTGAGGTGACAA...AATGCACCTGTCTGAAGTGACTGGGGTAAATGAAATTGCATGCTCGTTAACCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| 3UTR-3UTR GCA 90 bp | GTAACTTGGAAGGAAAACAAGAGTGCCCATACTAATGCTTTGATTTGCTTCCTGGTCACTTCAGACAGGTaGATTCTCAACTGGCAAATT | + |
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Preference number: 2 (lower is better) Translates to: VTWKENKSAHTNALICFLVTSDR*ILNWQI Trigger: AATTTGCCAGTTGAGAATGCACCTGTCTGAAGTGAC...CAGGAAGCAAATCAAAGCATTAGTATGGGCACTCTTGTTTTCCTTCCAAGTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108623.8 |
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| 3UTR-3UTR CAA 90 bp | TACGGCTTGAGCCGCAGTGACCCTTGCGCTGGGCTATGGGGAAACAAGGCTGTCCACAAGGTGTACGGCTaGAGCCGCAGTGACCCTTGC | + |
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Preference number: 3 (lower is better) Translates to: YGLSRSDPCAGLWGNKAVHKVYG*SRSDPC Trigger: GCAAGGGTCACTGCGGCTCAAGCCGTACACCTTGTG...GACAGCCTTGTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR TCA 72 bp | GAGTGCCTGGCAGACACCTTCACAAGGTGTACGGCTTaGGCCGCAGTGACCCTTGCGCTGGGCTATGGGGAA | + |
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Preference number: 3 (lower is better) Translates to: ECLADTFTRCTA*AAVTLALGYGE Trigger: TTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTACACCTTGTGAAGGTGTCTGCCAGGCACTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR CCA 72 bp | ACCTGCTTGCGGACCCTGTCCAGCTGCTTGAGTGCCTaGCAGACACCTTCACAAGGTGTACGGCTTGAGCCG | + |
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Preference number: 3 (lower is better) Translates to: TCLRTLSSCLSA*QTPSQGVRLEP Trigger: CGGCTCAAGCCGTACACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCTGGACAGGGTCCGCAAGCAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146927.2 |
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| 3UTR-3UTR CAA 90 bp | TCCAGCTGCTTGAGTGCCTGGCAGACACCTTCACAAGGTGTACGGCTTGAGCCGACCCTGTCCAGCTGCTaGAGTGCCTGGCAGACACCT | + |
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Preference number: 3 (lower is better) Translates to: SSCLSAWQTPSQGVRLEPTLSSC*SAWQTP Trigger: AGGTGTCTGCCAGGCACTCAAGCAGCTGGACAGGGT...CGGCTCAAGCCGTACACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146927.2 |
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| 3UTR GCA 72 bp | CTTCACAAGGTGTACGGCTTGAGCCGCAGTGACCCTTaGGCTGGGCTATGGGGAAACAAGGCTGTCCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: LHKVYGLSRSDP*AGLWGNKAVPS Trigger: ACTGGGGACAGCCTTGTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTACACCTTGTGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR TCA 72 bp | CAGACACCTTCACAAGGTGTACGGCTTGAGCCGCAGTaGCCCTTGCGCTGGGCTATGGGGAAACAAGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: QTPSQGVRLEPQ*PLRWAMGKQGC Trigger: ACAGCCTTGTTTCCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTACACCTTGTGAAGGTGTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 ENSMUST00000146927.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGAGCTGTTACCTGTCCAGCTGCTTGAGTGCCTGGCAGACACCTTCACAAGGTACCTGTCCAGCTGCTaGAGTGCCTGGCAGACACCT | + |
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Preference number: 3 (lower is better) Translates to: QELLPVQLLECLADTFTRYLSSC*SAWQTP Trigger: AGGTGTCTGCCAGGCACTCAAGCAGCTGGACAGGTA...CCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCTGGACAGGTAACAGCTCTTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| 3UTR CCA 72 bp | ACCAAGAGCTGTTACCTGTCCAGCTGCTTGAGTGCCTaGCAGACACCTTCACAAGGTGTACGGCTTGAGCCG | + |
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Preference number: 3 (lower is better) Translates to: TKSCYLSSCLSA*QTPSQGVRLEP Trigger: CGGCTCAAGCCGTACACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCTGGACAGGTAACAGCTCTTGGT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| 3UTR-3UTR CAA 90 bp | CATGCAATTTCATTTACCCCAGTCACTTCAGACAGGTGCATTCTCAACTGGCAATACCTGTCCAGCTGCTaGAGTGCCTGGCAGACACCT | + |
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Preference number: 3 (lower is better) Translates to: HAISFTPVTSDRCILNWQYLSSC*SAWQTP Trigger: AGGTGTCTGCCAGGCACTCAAGCAGCTGGACAGGTA...TTGCCAGTTGAGAATGCACCTGTCTGAAGTGACTGGGGTAAATGAAATTGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| 3UTR-3UTR CAA 90 bp | CAGACAGGTGCATTCTCAACTGGCAAATTAACAAGTAGAAATATAGCAATGAAGCACAAGGTGTACGGCTaGAGCCGCAGTGACCCTTGC | + |
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Preference number: 3 (lower is better) Translates to: QTGAFSTGKLTSRNIAMKHKVYG*SRSDPC Trigger: GCAAGGGTCACTGCGGCTCAAGCCGTACACCTTGTG...CTTCATTGCTATATTTCTACTTGTTAATTTGCCAGTTGAGAATGCACCTGTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| 3UTR TCA 72 bp | CTTGGAAGGAAAACAAGAGTGCCCATACTAATGCTTTaGTTTGCTTCCTGTCCACATTGTAATGCCATGTGG | + |
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Preference number: 3 (lower is better) Translates to: LGRKTRVPILML*FASCPHCNAMW Trigger: CCACATGGCATTACAATGTGGACAGGAAGCAAATCAAAGCATTAGTATGGGCACTCTTGTTTTCCTTCCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108623.8 |
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| 3UTR-3UTR CAA 90 bp | ACAATCCTCCAGTTCAGCCAAGTATTAATTAATCCTCTTCCTCATCATCACCAGGCCCATACTAATGCTTaGATTTGCTTCCTGTCCACA | + |
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Preference number: 3 (lower is better) Translates to: TILQFSQVLINPLPHHHQAHTNA*ICFLST Trigger: TGTGGACAGGAAGCAAATCAAAGCATTAGTATGGGC...CTGGTGATGATGAGGAAGAGGATTAATTAATACTTGGCTGAACTGGAGGATTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108623.8 |
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| 3UTR CAA 72 bp | GGGGGTGGCACCAAGAGCTGTTACCTGTCCAGCTGCTaGAGTGCCTGGCAGACACCTTCACAAGGTGTACGG | + |
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Preference number: 4 (lower is better) Translates to: GGGTKSCYLSSC*SAWQTPSQGVR Trigger: CCGTACACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCTGGACAGGTAACAGCTCTTGGTGCCACCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| CDS-3UTR TCA 90 bp | CATGCAATTTCATTTACCCCAGTCACTTCAGACAGGTGCATTCTCAACTGGCAAAGCACACGGGCATGGTaGATAGATTTGGCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: HAISFTPVTSDRCILNWQSTRAW*IDLARP Trigger: GGGCCTGGCCAAATCTATTCACCATGCCCGTGTGCT...TTGCCAGTTGAGAATGCACCTGTCTGAAGTGACTGGGGTAAATGAAATTGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| CDS-3UTR TCA 90 bp | ACAATCCTCCAGTTCAGCCAAGTATTAATTAATCCTCTTCCTCATCATCACCAGAGCACACGGGCATGGTaGATAGATTTGGCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: TILQFSQVLINPLPHHHQSTRAW*IDLARP Trigger: GGGCCTGGCCAAATCTATTCACCATGCCCGTGTGCT...CTGGTGATGATGAGGAAGAGGATTAATTAATACTTGGCTGAACTGGAGGATTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000146927.2 |
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| CDS-3UTR TCA 90 bp | CTTCAGACAGGTGCATTCTCAACTGGCAAATTAACAAGTAGAAATATAGCAATGAGCACACGGGCATGGTaGATAGATTTGGCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LQTGAFSTGKLTSRNIAMSTRAW*IDLARP Trigger: GGGCCTGGCCAAATCTATTCACCATGCCCGTGTGCT...CATTGCTATATTTCTACTTGTTAATTTGCCAGTTGAGAATGCACCTGTCTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108623.8 ENSMUST00000126562.8 |
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| CDS-3UTR CAA 90 bp | TTTGCAGGGCACGATTCTGAACCCTCAAGGGTAAGCTCACATCTGTCAGCTCCATCACCTAATGTGACGTaGGCGGATGAGCACACGGGC | + |
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Preference number: 5 (lower is better) Translates to: FAGHDSEPSRVSSHLSAPSPNVT*ADEHTG Trigger: GCCCGTGTGCTCATCCGCCAACGTCACATTAGGTGA...TGGAGCTGACAGATGTGAGCTTACCCTTGAGGGTTCAGAATCGTGCCCTGCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126562.8 |
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