Pregenerated sensors for RPS7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061477Ensembl transcript IDs: ENSMUST00000074267.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAACATGACTGGCTTCAGTGTGTTTTTCACCTTCCAGGCACCTCTTaGAAACTTCAGTTCATTCAAGAAGCTACTGCTGTCGTGCACCCA | + |
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Preference number: 1 (lower is better) Translates to: QHDWLQCVFHLPGTS*KLQFIQEATAVVHP Trigger: TGGGTGCACGACAGCAGTAGCTTCTTGAATGAACTGAAGTTTTCAAGAGGTGCCTGGAAGGTGAAAAACACACTGAAGCCAGTCATGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| 3UTR GCA 90 bp | GCACCTCTTGAAAACTTCAGTTCATTCAAGAAGCTACTGCTGTCGTaGACCCATGGCCCTGAGATTTTGACAAGTTACTACAACCAAATA | + |
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Preference number: 1 (lower is better) Translates to: APLENFSSFKKLLLS*THGPEILTSYYNQI Trigger: TATTTGGTTGTAGTAACTTGTCAAAATCTCAGGGCCATGGGTGCACGACAGCAGTAGCTTCTTGAATGAACTGAAGTTTTCAAGAGGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| 3UTR TCA 90 bp | CTTCAGTTCATTCAAGAAGCTACTGCTGTCGTGCACCCATGGCCCTaGGATTTTGACAAGTTACTACAACCAAATACTATGAATGACACT | + |
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Preference number: 1 (lower is better) Translates to: LQFIQEATAVVHPWP*DFDKLLQPNTMNDT Trigger: AGTGTCATTCATAGTATTTGGTTGTAGTAACTTGTCAAAATCTCAGGGCCATGGGTGCACGACAGCAGTAGCTTCTTGAATGAACTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| 3UTR-3UTR TCA 90 bp | TCCCGCAAGGTGGGTGTGAACCCCAGTCTGTTTCACAGCAGCAGAATGCCCCCAATGGCCCTGAGATTTTaGCAAGTTACTACAACCAAA | + |
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Preference number: 2 (lower is better) Translates to: SRKVGVNPSLFHSSRMPPMALRF*QVTTTK Trigger: TTTGGTTGTAGTAACTTGTCAAAATCTCAGGGCCAT...TGGGGGCATTCTGCTGCTGTGAAACAGACTGGGGTTCACACCCACCTTGCGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| 3UTR CCA 72 bp | TTTCACAGCAGCAGAATGCCCCCATATCAACATGACTaGCTTCAGTGTGTTTTTCACCTTCCAGGCACCTCT | + |
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Preference number: 3 (lower is better) Translates to: FHSSRMPPYQHD*LQCVFHLPGTS Trigger: AGAGGTGCCTGGAAGGTGAAAAACACACTGAAGCCAGTCATGTTGATATGGGGGCATTCTGCTGCTGTGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| 3UTR TCA 72 bp | TGGCTTCAGTGTGTTTTTCACCTTCCAGGCACCTCTTaGAAACTTCAGTTCATTCAAGAAGCTACTGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: WLQCVFHLPGTS*KLQFIQEATAV Trigger: GACAGCAGTAGCTTCTTGAATGAACTGAAGTTTTCAAGAGGTGCCTGGAAGGTGAAAAACACACTGAAGCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| 3UTR TCA 72 bp | ATTCAAGAAGCTACTGCTGTCGTGCACCCATGGCCCTaGGATTTTGACAAGTTACTACAACCAAATACTATG | + |
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Preference number: 3 (lower is better) Translates to: IQEATAVVHPWP*DFDKLLQPNTM Trigger: CATAGTATTTGGTTGTAGTAACTTGTCAAAATCTCAGGGCCATGGGTGCACGACAGCAGTAGCTTCTTGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| CDS-3UTR GCA 90 bp | CAAGGTGGGTGTGAACCCCAGTCTGTTTCACAGCAGCAGAATGCCCCCATATCAGATGGCGTCGTGCACTaGTGTCAGGGTACGGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QGGCEPQSVSQQQNAPISDGVVH*CQGTAS Trigger: AGAAGCCGTACCCTGACAGCAGTGCACGACGCCATC...TGATATGGGGGCATTCTGCTGCTGTGAAACAGACTGGGGTTCACACCCACCTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| CDS-3UTR GCA 90 bp | TCCCGCAAGGTGGGTGTGAACCCCAGTCTGTTTCACAGCAGCAGAATGCCCCCAGCAATGAAGACCACGTaGTTGCCACTGAACTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: SRKVGVNPSLFHSSRMPPAMKTT*LPLNFF Trigger: GAAAAAGTTCAGTGGCAAGCACGTGGTCTTCATTGC...TGGGGGCATTCTGCTGCTGTGAAACAGACTGGGGTTCACACCCACCTTGCGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| CDS-3UTR GCA 90 bp | ATCAACATGACTGGCTTCAGTGTGTTTTTCACCTTCCAGGCACCTCTTGAAAACTTGAGTTCCCGCAGCTaGGCCTTGAGATCGGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: INMTGFSVFFTFQAPLENLSSRS*ALRSEF Trigger: GAACTCCGATCTCAAGGCGCAGCTGCGGGAACTCAA...GTTTTCAAGAGGTGCCTGGAAGGTGAAAAACACACTGAAGCCAGTCATGTTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| CDS-3UTR GCA 90 bp | TTCAGTTCATTCAAGAAGCTACTGCTGTCGTGCACCCATGGCCCTGAGATTTTGTTCGATTTCCTTGGCTaGGGTGATGTTGAGTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: FSSFKKLLLSCTHGPEILFDFLG*GDVEFP Trigger: CGGGAACTCAACATCACCGCAGCCAAGGAAATCGAA...CAAAATCTCAGGGCCATGGGTGCACGACAGCAGTAGCTTCTTGAATGAACTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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| CDS-3UTR CCA 90 bp | TTCAAGAAGCTACTGCTGTCGTGCACCCATGGCCCTGAGATTTTGACAAGTTACTCAGGGTACGGCTTCTaGGGCGCTTCTGCTTATTTT | + |
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Preference number: 4 (lower is better) Translates to: FKKLLLSCTHGPEILTSYSGYGF*GASAYF Trigger: AAAATAAGCAGAAGCGCCCCAGAAGCCGTACCCTGA...GTAACTTGTCAAAATCTCAGGGCCATGGGTGCACGACAGCAGTAGCTTCTTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074267.5 |
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