Pregenerated sensors for RPS6KB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020516Ensembl transcript IDs: ENSMUST00000058286.9, ENSMUST00000154617.8
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGTCTATCTCCCCCGCTTACTGCCCTCTTTATGCACTTTAGCCTaGTTCTCTTCTGTCCCTCCTCGACCAAGGCTTGACTCAAATACT | + |
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Preference number: 1 (lower is better) Translates to: QVYLPRLLPSLCTLA*FSSVPPRPRLDSNT Trigger: AGTATTTGAGTCAAGCCTTGGTCGAGGAGGGACAGAAGAGAATCAGGCTAAAGTGCATAAAGAGGGCAGTAAGCGGGGGAGATAGACCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR TCA 90 bp | TTCAGATGTTGTAAGACACCTGGAATTAAACCCAGGTCCTCTGCATaGGCAGATGTTCTTAACCCTGACCCATCTCTCCAGTCCCTCACG | + |
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Preference number: 1 (lower is better) Translates to: FRCCKTPGIKPRSSA*ADVLNPDPSLQSLT Trigger: CGTGAGGGACTGGAGAGATGGGTCAGGGTTAAGAACATCTGCTCATGCAGAGGACCTGGGTTTAATTCCAGGTGTCTTACAACATCTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR GCA 90 bp | GTAAACAGCATAACAGTACAAAGTAAACCTAGAACCACACCAATGTaGTGTAAAGAGTCGAGAGAGACGCCCGTGGCAACACCCTCTCCC | + |
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Preference number: 1 (lower is better) Translates to: VNSITVQSKPRTTPM*CKESRETPVATPSP Trigger: GGGAGAGGGTGTTGCCACGGGCGTCTCTCTCGACTCTTTACAGCACATTGGTGTGGTTCTAGGTTTACTTTGTACTGTTATGCTGTTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR TCA 90 bp | ATTGAACTCAGGACCTCTGGAAAAGTAGCCAGAGTTCTTAACTGCTaGGTCATCTCTCCAGCCTCTCAAGGTTCTATTTTTGCTCACTGT | + |
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Preference number: 1 (lower is better) Translates to: IELRTSGKVARVLNC*VISPASQGSIFAHC Trigger: ACAGTGAGCAAAAATAGAACCTTGAGAGGCTGGAGAGATGACTCAGCAGTTAAGAACTCTGGCTACTTTTCCAGAGGTCCTGAGTTCAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR TCA 90 bp | AGTAAACTGCAAAGCCTTCCCAGCTCACACTACAGCAGAAGAAATTaGGCTGTAGGAGCATGGAGCTATAACCAATGCTTGTTTTGTTAT | + |
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Preference number: 1 (lower is better) Translates to: SKLQSLPSSHYSRRN*AVGAWSYNQCLFCY Trigger: ATAACAAAACAAGCATTGGTTATAGCTCCATGCTCCTACAGCTCAATTTCTTCTGCTGTAGTGTGAGCTGGGAAGGCTTTGCAGTTTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR GCA 90 bp | ATGTATGAGGGTTTTGCCTATGTGTATATATGTACACTACATGTGTaGCTGGTGCCAACAAACCCTAGTTTCAGGTTCCCAGGAAGTAAA | + |
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Preference number: 1 (lower is better) Translates to: MYEGFAYVYICTLHV*LVPTNPSFRFPGSK Trigger: TTTACTTCCTGGGAACCTGAAACTAGGGTTTGTTGGCACCAGGCACACATGTAGTGTACATATATACACATAGGCAAAACCCTCATACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR CCA 90 bp | AGCCCCTCAGAACCCTTCTGGAGACTGGATCTGGGCAGGAGACAGAACCTGGCCGGGGTCATAGCTTGGTaGCAGCATGCACAAAGAACA | + |
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Preference number: 2 (lower is better) Translates to: SPSEPFWRLDLGRRQNLAGVIAW*QHAQRT Trigger: TGTTCTTTGTGCATGCTGCCACCAAGCTATGACCCC...GGCCAGGTTCTGTCTCCTGCCCAGATCCAGTCTCCAGAAGGGTTCTGAGGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR GCA 90 bp | AGCCCCTCAGAACCCTTCTGGAGACTGGATCTGGGCAGGAGACAGAACCTGGCCATCAGCATGCAGGTTTaGCATAGGAAGGGAGGAGTA | + |
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Preference number: 2 (lower is better) Translates to: SPSEPFWRLDLGRRQNLAISMQV*HRKGGV Trigger: TACTCCTCCCTTCCTATGGCAAACCTGCATGCTGAT...GGCCAGGTTCTGTCTCCTGCCCAGATCCAGTCTCCAGAAGGGTTCTGAGGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR CCA 90 bp | AGCCCCTCAGAACCCTTCTGGAGACTGGATCTGGGCAGGAGACAGAACCTGGCCATGGCCATCATCATGTaGAAAGATGGTAAGCTGACT | + |
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Preference number: 2 (lower is better) Translates to: SPSEPFWRLDLGRRQNLAMAIIM*KDGKLT Trigger: AGTCAGCTTACCATCTTTCCACATGATGATGGCCAT...GGCCAGGTTCTGTCTCCTGCCCAGATCCAGTCTCCAGAAGGGTTCTGAGGGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR TCA 90 bp | CTTGGTCTGCTAGTTTGTTCCTTGAGTAAACTGCAAAGCCTTCCCAGCTCACACCTACACTTGGGAGACTaGGGCAGGAAGACCCTAAGT | + |
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Preference number: 2 (lower is better) Translates to: LGLLVCSLSKLQSLPSSHLHLGD*GRKTLS Trigger: ACTTAGGGTCTTCCTGCCTCAGTCTCCCAAGTGTAG...GTGTGAGCTGGGAAGGCTTTGCAGTTTACTCAAGGAACAAACTAGCAGACCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR TCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTGCAGCCATCAGCATaGGAACCCTTGCGAACGCCG | + |
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Preference number: 2 (lower is better) Translates to: CILSSNLKLSQKRYVGKFLQPSA*EPLRTP Trigger: CGGCGTTCGCAAGGGTTCTCATGCTGATGGCTGCAA...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR GCA 90 bp | GCCAAAGCCATAAGAGGGCTGAGAAACCCTGAACCTGGAGTTATAATGGCTGTGCTAAGGATCAGCAAATaGTCACAACTTTGTAGATGC | + |
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Preference number: 2 (lower is better) Translates to: AKAIRGLRNPEPGVIMAVLRISK*SQLCRC Trigger: GCATCTACAAAGTTGTGAGCATTTGCTGATCCTTAG...CACAGCCATTATAACTCCAGGTTCAGGGTTTCTCAGCCCTCTTATGGCTTTGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR GCA 90 bp | TGGTGGCAGCATGCACAAAGAACAGGGTTCAGTTCTCATAACAGGAAAAATAATTGTACACTACATGTGTaGCTGGTGCCAACAAACCCT | + |
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Preference number: 2 (lower is better) Translates to: WWQHAQRTGFSSHNRKNNCTLHV*LVPTNP Trigger: AGGGTTTGTTGGCACCAGGCACACATGTAGTGTACA...ATTATTTTTCCTGTTATGAGAACTGAACCCTGTTCTTTGTGCATGCTGCCACCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR TCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCGTTTGCTGCCACAATTaGAGGGCAGTATTTCCAGTC | + |
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Preference number: 2 (lower is better) Translates to: CILSSNLKLSQKRYVGKFVCCHN*RAVFPV Trigger: GACTGGAAATACTGCCCTTCAATTGTGGCAGCAAAC...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGGTTCCCAGGAAGTAAAGTTCAGATGTTGTAAGACACCTGGAATTAAACCCTCACAACTTTGTAGATaGCTTGGTCTGCTAGTTTGT | + |
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Preference number: 2 (lower is better) Translates to: SGSQEVKFRCCKTPGIKPSQLCR*LGLLVC Trigger: ACAAACTAGCAGACCAAGGCATCTACAAAGTTGTGA...GGGTTTAATTCCAGGTGTCTTACAACATCTGAACTTTACTTCCTGGGAACCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR TCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTATGCACTTTAGCCTaGTTCTCTTCTGTCCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: CILSSNLKLSQKRYVGKFLCTLA*FSSVPP Trigger: AGGAGGGACAGAAGAGAATCAGGCTAAAGTGCATAA...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCAGAGAAGACAGAAGCTaGCTTTCTTCACACCAACCA | + |
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Preference number: 2 (lower is better) Translates to: CILSSNLKLSQKRYVGKFREDRS*LSSHQP Trigger: TGGTTGGTGTGAAGAAAGCCAGCTTCTGTCTTCTCT...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR TCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCATCAGATTTCAACGGTaGTTCCGAAGCAACATCCTA | + |
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Preference number: 2 (lower is better) Translates to: CILSSNLKLSQKRYVGKFIRFQR*FRSNIL Trigger: TAGGATGTTGCTTCGGAATCACCGTTGAAATCTGAT...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR GCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTATTGCATAGGCATGTaGTTTCTGTCTGTGACACTC | + |
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Preference number: 2 (lower is better) Translates to: CILSSNLKLSQKRYVGKFYCIGM*FLSVTL Trigger: GAGTGTCACAGACAGAAAGCACATGCCTATGCAATA...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CCA 90 bp | TGGTGGCAGCATGCACAAAGAACAGGGTTCAGTTCTCATAACAGGAAAAATAATTTGCTTTTAGCTACATaGTGGTGGTACACATATGTA | + |
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Preference number: 2 (lower is better) Translates to: WWQHAQRTGFSSHNRKNNLLLAT*WWYTYV Trigger: TACATATGTGTACCACCACCATGTAGCTAAAAGCAA...ATTATTTTTCCTGTTATGAGAACTGAACCCTGTTCTTTGTGCATGCTGCCACCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR CAA 90 bp | GAGACAGAACCTGGCCTGGAACTCAATTACCTACTCAGACTAACCTaGAAAAGTAATTCTCTTTATTTACAATCCACAGTGCTAGAATTA | + |
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Preference number: 2 (lower is better) Translates to: ETEPGLELNYLLRLT*KSNSLYLQSTVLEL Trigger: TAATTCTAGCACTGTGGATTGTAAATAAAGAGAATTACTTTTCAAGGTTAGTCTGAGTAGGTAATTGAGTTCCAGGCCAGGTTCTGTCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR TCA 90 bp | CATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTTATAAGAACAGGTGGTaGTACTGTTTCCAGTGTAGT | + |
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Preference number: 2 (lower is better) Translates to: HPILKSQTISKTVCGKILYKNRW*YCFQCS Trigger: ACTACACTGGAAACAGTATCACCACCTGTTCTTATA...AAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR GCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTCTTGTTTTTATATTaGAGGATGCTCACACATCCC | + |
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Preference number: 2 (lower is better) Translates to: CILSSNLKLSQKRYVGKFFLFLY*RMLTHP Trigger: GGGATGTGTGAGCATCCTGCAATATAAAAACAAGAA...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CCA 90 bp | CAATGGCTCACTTACATTTATTCAGCTGTGAACATCTACTACATTCTGATACAAAAGTTCAATGCCAGCTaGCTGTACAAAAAGACCATA | + |
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Preference number: 2 (lower is better) Translates to: QWLTYIYSAVNIYYILIQKFNAS*LYKKTI Trigger: TATGGTCTTTTTGTACAGCCAGCTGGCATTGAACTT...TTGTATCAGAATGTAGTAGATGTTCACAGCTGAATAAATGTAAGTGAGCCATTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR GCA 90 bp | CATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTATGAAGTTCTCAAAATaGTGCTACAGTCAAGAGAAT | + |
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Preference number: 2 (lower is better) Translates to: HPILKSQTISKTVCGKILMKFSK*CYSQEN Trigger: ATTCTCTTGACTGTAGCAGCATTTTGAGAACTTCAT...AAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CAA 90 bp | AGCCCCTCAGAACCCTTCTGGAGACTGGATCTGGGCAGGAGACAGAACCTGGCCATAAACATGGGAGCCTaGAAAATGGCCATCATCATG | + |
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Preference number: 3 (lower is better) Translates to: SPSEPFWRLDLGRRQNLAINMGA*KMAIIM Trigger: CATGATGATGGCCATTTTCAAGGCTCCCATGTTTAT...GGCCAGGTTCTGTCTCCTGCCCAGATCCAGTCTCCAGAAGGGTTCTGAGGGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR CCA 72 bp | CCTTCTGGAGACTGGATCTGGGCAGGAGACAGAACCTaGCCTGGAACTCAATTACCTACTCAGACTAACCTT | + |
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Preference number: 3 (lower is better) Translates to: PSGDWIWAGDRT*PGTQLPTQTNL Trigger: AAGGTTAGTCTGAGTAGGTAATTGAGTTCCAGGCCAGGTTCTGTCTCCTGCCCAGATCCAGTCTCCAGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR TCA 72 bp | TGTAAGACACCTGGAATTAAACCCAGGTCCTCTGCATaGGCAGATGTTCTTAACCCTGACCCATCTCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: CKTPGIKPRSSA*ADVLNPDPSLQ Trigger: CTGGAGAGATGGGTCAGGGTTAAGAACATCTGCTCATGCAGAGGACCTGGGTTTAATTCCAGGTGTCTTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR TCA 72 bp | CAAAGCCTTCCCAGCTCACACTACAGCAGAAGAAATTaGGCTGTAGGAGCATGGAGCTATAACCAATGCTTG | + |
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Preference number: 3 (lower is better) Translates to: QSLPSSHYSRRN*AVGAWSYNQCL Trigger: CAAGCATTGGTTATAGCTCCATGCTCCTACAGCTCAATTTCTTCTGCTGTAGTGTGAGCTGGGAAGGCTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR TCA 72 bp | AAATTCTCTGTCCAGATGGACGTTTGCTGCCACAATTaGAGGGCAGTATTTCCAGTCATCTGCCATGGCTCT | + |
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Preference number: 3 (lower is better) Translates to: KFSVQMDVCCHN*RAVFPVICHGS Trigger: AGAGCCATGGCAGATGACTGGAAATACTGCCCTTCAATTGTGGCAGCAAACGTCCATCTGGACAGAGAATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR GCA 72 bp | ATAACAGTACAAAGTAAACCTAGAACCACACCAATGTaGTGTAAAGAGTCGAGAGAGACGCCCGTGGCAACA | + |
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Preference number: 3 (lower is better) Translates to: ITVQSKPRTTPM*CKESRETPVAT Trigger: TGTTGCCACGGGCGTCTCTCTCGACTCTTTACAGCACATTGGTGTGGTTCTAGGTTTACTTTGTACTGTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR GCA 72 bp | TGGCTTGGATCCTTTGAGGAACACAGCAAGAGCATCTaGATAAAGAAACCCAAGGGCTGCAACTATTACCAA | + |
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Preference number: 3 (lower is better) Translates to: WLGSFEEHSKSI*IKKPKGCNYYQ Trigger: TTGGTAATAGTTGCAGCCCTTGGGTTTCTTTATGCAGATGCTCTTGCTGTGTTCCTCAAAGGATCCAAGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CAA 90 bp | TCAGGTTCCCAGGAAGTAAAGTTCAGATGTTGTAAGACACCTGGAATTAAACCCCTACAGCAGAAGAAATaGAGCTGTAGGAGCATGGAG | + |
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Preference number: 3 (lower is better) Translates to: SGSQEVKFRCCKTPGIKPLQQKK*SCRSME Trigger: CTCCATGCTCCTACAGCTCAATTTCTTCTGCTGTAG...GGGTTTAATTCCAGGTGTCTTACAACATCTGAACTTTACTTCCTGGGAACCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR TCA 72 bp | AGGACCTCTGGAAAAGTAGCCAGAGTTCTTAACTGCTaGGTCATCTCTCCAGCCTCTCAAGGTTCTATTTTT | + |
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Preference number: 3 (lower is better) Translates to: RTSGKVARVLNC*VISPASQGSIF Trigger: AAAAATAGAACCTTGAGAGGCTGGAGAGATGACTCAGCAGTTAAGAACTCTGGCTACTTTTCCAGAGGTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR TCA 72 bp | GTTTATAGATGTAAGCTATCATGTGGGTGCTGGGATTaGACTCAGGACCTCTGGAAAAGTAGCCAGAGTTCT | + |
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Preference number: 3 (lower is better) Translates to: VYRCKLSCGCWD*TQDLWKSSQSS Trigger: AGAACTCTGGCTACTTTTCCAGAGGTCCTGAGTTCAATCCCAGCACCCACATGATAGCTTACATCTATAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR CCA 72 bp | AGACTGAGGCAGGAAGACCCTAAGTTCAATGCCAGCTaGCTGTACAAAAAGACCATATCCAAGAAAACAAAC | + |
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Preference number: 3 (lower is better) Translates to: RLRQEDPKFNAS*LYKKTISKKTN Trigger: GTTTGTTTTCTTGGATATGGTCTTTTTGTACAGCCAGCTGGCATTGAACTTAGGGTCTTCCTGCCTCAGTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR GCA 72 bp | CAAAAATCATCCTATGGAGACCTAAGGATCAGCAAATaGTCACAACTTTGTAGATGCCTTGGTCTGCTAGTT | + |
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Preference number: 3 (lower is better) Translates to: QKSSYGDLRISK*SQLCRCLGLLV Trigger: AACTAGCAGACCAAGGCATCTACAAAGTTGTGAGCATTTGCTGATCCTTAGGTCTCCATAGGATGATTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR GCA 72 bp | CTGAGTCATCTCTCCAGCCTCTCAAGGTTCTATTTTTaGTCACTGTTAACATTTCTTCCCATCTCACTTCAA | + |
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Preference number: 3 (lower is better) Translates to: LSHLSSLSRFYF*SLLTFLPISLQ Trigger: TTGAAGTGAGATGGGAAGAAATGTTAACAGTGAGCAAAAATAGAACCTTGAGAGGCTGGAGAGATGACTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CAA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTATGGCTTGGATCCTTaGAGGAACACAGCAAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: CILSSNLKLSQKRYVGKFYGLDP*RNTARA Trigger: TGCTCTTGCTGTGTTCCTCAAAGGATCCAAGCCATA...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CAA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCCGTTTGCTGCCACAATaGAAGGGCAGTATTTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: CILSSNLKLSQKRYVGKFRLLPQ*KGSISS Trigger: ACTGGAAATACTGCCCTTCAATTGTGGCAGCAAACG...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR TCA 72 bp | GTTAACATTTCTTCCCATCTCACTTCAATTACAATTTaGATAAGCAAGGTCTGGGTCAATCCTGACTGTGAC | + |
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Preference number: 3 (lower is better) Translates to: VNISSHLTSITI*ISKVWVNPDCD Trigger: GTCACAGTCAGGATTGACCCAGACCTTGCTTATTCAAATTGTAATTGAAGTGAGATGGGAAGAAATGTTAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CAA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCCATGTAAGAGAACATTaGATCCAACGAGACTACAGT | + |
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Preference number: 3 (lower is better) Translates to: CILSSNLKLSQKRYVGKFHVREH*IQRDYS Trigger: ACTGTAGTCTCGTTGGATCAAATGTTCTCTTACATG...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR TCA 72 bp | TATAGGCCTCACCATTTTCTGTGTAAGAGTTTACACTaGTTAACTACCTCAAAAATCATCCTATGGAGACCT | + |
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Preference number: 3 (lower is better) Translates to: YRPHHFLCKSLH*LTTSKIILWRP Trigger: AGGTCTCCATAGGATGATTTTTGAGGTAGTTAATCAGTGTAAACTCTTACACAGAAAATGGTGAGGCCTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR-3UTR CAA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCCACTTCAATTACAATTaGAATAAGCAAGGTCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: CILSSNLKLSQKRYVGKFHFNYN*NKQGLG Trigger: ACCCAGACCTTGCTTATTCAAATTGTAATTGAAGTG...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR-3UTR CAA 90 bp | CATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTAGTTTCTCAATAAACTaGCCACAGCATCAATTTCAC | + |
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Preference number: 3 (lower is better) Translates to: HPILKSQTISKTVCGKILSFSIN*PQHQFH Trigger: GTGAAATTGATGCTGTGGCAAGTTTATTGAGAAACT...AAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR TCA 72 bp | ATCATTACTGCAGCTCCTAATTTACTGCTACAATTATaGAGTTCTCAAAATGCTGCTACAGTCAAGAGAATC | + |
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Preference number: 3 (lower is better) Translates to: IITAAPNLLLQL*SSQNAATVKRI Trigger: GATTCTCTTGACTGTAGCAGCATTTTGAGAACTTCATAATTGTAGCAGTAAATTAGGAGCTGCAGTAATGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR GCA 90 bp | CTTGGTCTGCTAGTTTGTTCCTTGAGTAAACTGCAAAGCCTTCCCAGCTCACACCTCATCCTCAGAGCCTaGATCTTCTGGCTGGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LGLLVCSLSKLQSLPSSHLILRA*IFWLVQ Trigger: CTGGACCAGCCAGAAGATGCAGGCTCTGAGGATGAG...GTGTGAGCTGGGAAGGCTTTGCAGTTTACTCAAGGAACAAACTAGCAGACCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR TCA 90 bp | TGGTACACATATGTAAGCTCTACACTTGGGAGACTGAGGCAGGAAGACCCTAAGAAGGAAATTCTGCAGTaGAGAGCGGTCCACCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: WYTYVSSTLGRLRQEDPKKEILQ*RAVHPR Trigger: CCTTGGGTGGACCGCTCTTCACTGCAGAATTTCCTT...CTTAGGGTCTTCCTGCCTCAGTCTCCCAAGTGTAGAGCTTACATATGTGTACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR GCA 90 bp | GCCAAAGCCATAAGAGGGCTGAGAAACCCTGAACCTGGAGTTATAATGGCTGTGTATGTCAAACACTCCTaGCATGTCCTCAGCTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: AKAIRGLRNPEPGVIMAVYVKHS*HVLSFP Trigger: AGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATA...CACAGCCATTATAACTCCAGGTTCAGGGTTTCTCAGCCCTCTTATGGCTTTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR CCA 90 bp | CTGAGGCAGGAAGACCCTAAGTTCAATGCCAGCTGGCTGTACAAAAAGACCATACCTGCATCTTCTGGCTaGTCCAGGTCTATGTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LRQEDPKFNASWLYKKTIPASSG*SRSMSN Trigger: GTTTGACATAGACCTGGACCAGCCAGAAGATGCAGG...TATGGTCTTTTTGTACAGCCAGCTGGCATTGAACTTAGGGTCTTCCTGCCTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR CCA 90 bp | AGATGCCTTGGTCTGCTAGTTTGTTCCTTGAGTAAACTGCAAAGCCTTCCCAGCCATGCCAAGTTCATATaGTCCAACTCCCCCATGGTC | + |
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Preference number: 4 (lower is better) Translates to: RCLGLLVCSLSKLQSLPSHAKFI*SNSPMV Trigger: GACCATGGGGGAGTTGGACCATATGAACTTGGCATG...GCTGGGAAGGCTTTGCAGTTTACTCAAGGAACAAACTAGCAGACCAAGGCATCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR CCA 90 bp | CTGAGGCAGGAAGACCCTAAGTTCAATGCCAGCTGGCTGTACAAAAAGACCATAGGTCCAACTCCCCCATaGTCCATGCTTTCATTTAAC | + |
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Preference number: 4 (lower is better) Translates to: LRQEDPKFNASWLYKKTIGPTPP*SMLSFN Trigger: GTTAAATGAAAGCATGGACCATGGGGGAGTTGGACC...TATGGTCTTTTTGTACAGCCAGCTGGCATTGAACTTAGGGTCTTCCTGCCTCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR CCA 90 bp | CTTGGTCTGCTAGTTTGTTCCTTGAGTAAACTGCAAAGCCTTCCCAGCTCACACCCTAAGACTGCACCTTaGGAACTGGAAAGTCAATTC | + |
|
Preference number: 4 (lower is better) Translates to: LGLLVCSLSKLQSLPSSHPKTAP*ELESQF Trigger: GAATTGACTTTCCAGTTCCCAAGGTGCAGTCTTAGG...GTGTGAGCTGGGAAGGCTTTGCAGTTTACTCAAGGAACAAACTAGCAGACCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR CCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCGAGGATTTGCCGTGCTaGCTGAAGCACCTCGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: CILSSNLKLSQKRYVGKFEDLPC*LKHLVP Trigger: GGGGACGAGGTGCTTCAGCCAGCACGGCAAATCCTC...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR GCA 90 bp | TCTACACTTGGGAGACTGAGGCAGGAAGACCCTAAGTTCAATGCCAGCTGGCTGATTCCTCACTATCATTaGCTTTTTAAGCACCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: STLGRLRQEDPKFNASWLIPHYH*LFKHLH Trigger: ATGAAGGTGCTTAAAAAGGCAATGATAGTGAGGAAT...CAGCCAGCTGGCATTGAACTTAGGGTCTTCCTGCCTCAGTCTCCCAAGTGTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR CCA 90 bp | TGGTACACATATGTAAGCTCTACACTTGGGAGACTGAGGCAGGAAGACCCTAAGCTGCACCTTGGGAACTaGAAAGTCAATTCAAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: WYTYVSSTLGRLRQEDPKLHLGN*KVNSRK Trigger: TTTCCTTGAATTGACTTTCCAGTTCCCAAGGTGCAG...CTTAGGGTCTTCCTGCCTCAGTCTCCCAAGTGTAGAGCTTACATATGTGTACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR CAA 72 bp | CAACTTTGTAGATGCCTTGGTCTGCTAGTTTGTTCCTaGAGTAAACTGCAAAGCCTTCCCAGCTCACACTAC | + |
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Preference number: 4 (lower is better) Translates to: QLCRCLGLLVCS*SKLQSLPSSHY Trigger: GTAGTGTGAGCTGGGAAGGCTTTGCAGTTTACTCAAGGAACAAACTAGCAGACCAAGGCATCTACAAAGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR GCA 90 bp | TTCTTGTTTTTATATTGCAGGATGCTCACACATCCCCTTCCCGGATTTGTTTCCTATGTCAAACACTCCTaGCATGTCCTCAGCTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: FLFLYCRMLTHPLPGFVSYVKHS*HVLSFP Trigger: AGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATA...GGAAACAAATCCGGGAAGGGGATGTGTGAGCATCCTGCAATATAAAAACAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR GCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCCTCATCCTCAGAGCCTaGATCTTCTGGCTGGTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: CILSSNLKLSQKRYVGKFLILRA*IFWLVQ Trigger: CTGGACCAGCCAGAAGATGCAGGCTCTGAGGATGAG...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| 3UTR CAA 72 bp | GCTGAGTCATCTCTCCAGCCTCTCAAGGTTCTATTTTaGCTCACTGTTAACATTTCTTCCCATCTCACTTCA | + |
|
Preference number: 4 (lower is better) Translates to: AESSLQPLKVLF*LTVNISSHLTS Trigger: TGAAGTGAGATGGGAAGAAATGTTAACAGTGAGCAAAAATAGAACCTTGAGAGGCTGGAGAGATGACTCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR GCA 90 bp | TTCTTGTTTTTATATTGCAGGATGCTCACACATCCCCTTCCCGGATTTGTTTCCACATCCTCTTCAGATTaGAACAGAGGCTTAAAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: FLFLYCRMLTHPLPGFVSTSSSD*NRGLKG Trigger: TCCCTTTAAGCCTCTGTTGCAATCTGAAGAGGATGT...GGAAACAAATCCGGGAAGGGGATGTGTGAGCATCCTGCAATATAAAAACAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR TCA 90 bp | CATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTTTCTATTCTCCCCAGTaGATGGAGGTGCTCCAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: HPILKSQTISKTVCGKILFYSPQ*MEVLQS Trigger: TGACTGGAGCACCTCCATTCACTGGGGAGAATAGAA...AAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR CCA 90 bp | CATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTCCTGCATCTTCTGGCTaGTCCAGGTCTATGTCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: HPILKSQTISKTVCGKILPASSG*SRSMSN Trigger: GTTTGACATAGACCTGGACCAGCCAGAAGATGCAGG...AAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR CCA 90 bp | CATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTATTCTCCCCAGTGAATaGAGGTGCTCCAGTCAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: HPILKSQTISKTVCGKILILPSE*RCSSQH Trigger: ATGCTGACTGGAGCACCTCCATTCACTGGGGAGAAT...AAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR CCA 90 bp | CATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTGGTCCAACTCCCCCATaGTCCATGCTTTCATTTAAC | + |
|
Preference number: 4 (lower is better) Translates to: HPILKSQTISKTVCGKILGPTPP*SMLSFN Trigger: GTTAAATGAAAGCATGGACCATGGGGGAGTTGGACC...AAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR TCA 90 bp | TGCATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCAAATCAGGTCCACAATaGAAGGGTGTTTCACTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: CILSSNLKLSQKRYVGKFKSGPQ*KGVSLP Trigger: AGGAAGTGAAACACCCTTTCATTGTGGACCTGATTT...GAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS-3UTR GCA 90 bp | AGTTCTTATAACAGTCTCAGAAAGTTACCATATGGCTTACTATGCCAAATGCTAAATTCAAGGAAATTCTaGAGTGAAGAGCGGTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: SSYNSLRKLPYGLLCQMLNSRKF*SEERST Trigger: GGTGGACCGCTCTTCACTGCAGAATTTCCTTGAATT...TAGCATTTGGCATAGTAAGCCATATGGTAACTTTCTGAGACTGTTATAAGAACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR CAA 72 bp | CCTGGCCTGGAACTCAATTACCTACTCAGACTAACCTaGAAAAGTAATTCTCTTTATTTACAATCCACAGTG | + |
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Preference number: 4 (lower is better) Translates to: PGLELNYLLRLT*KSNSLYLQSTV Trigger: CACTGTGGATTGTAAATAAAGAGAATTACTTTTCAAGGTTAGTCTGAGTAGGTAATTGAGTTCCAGGCCAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS-3UTR TCA 90 bp | CAATGGCTCACTTACATTTATTCAGCTGTGAACATCTACTACATTCTGATACAAAAATCAGGTCCACAATaGAAGGGTGTTTCACTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QWLTYIYSAVNIYYILIQKSGPQ*KGVSLP Trigger: AGGAAGTGAAACACCCTTTCATTGTGGACCTGATTT...TTGTATCAGAATGTAGTAGATGTTCACAGCTGAATAAATGTAAGTGAGCCATTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| 3UTR CAA 72 bp | AATATATGTAACAAGACAGAGATAAACATGGGAGCCTaGAAAATGGCCATCATCATGTGGAAAGATGGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: NICNKTEINMGA*KMAIIMWKDGK Trigger: CTTACCATCTTTCCACATGATGATGGCCATTTTCAAGGCTCCCATGTTTATCTCTGTCTTGTTACATATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS GCA 90 bp | CTAAGACTGCACCTTGGGAACTGGAAAGTCAATTCAAGGAAATTCTaGAGTGAAGAGCGGTCCACCCAAGGCCACGCTGTGTCTTCCATG | + |
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Preference number: 5 (lower is better) Translates to: LRLHLGNWKVNSRKF*SEERSTQGHAVSSM Trigger: CATGGAAGACACAGCGTGGCCTTGGGTGGACCGCTCTTCACTGCAGAATTTCCTTGAATTGACTTTCCAGTTCCCAAGGTGCAGTCTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS TCA 90 bp | ACTGCACCTTGGGAACTGGAAAGTCAATTCAAGGAAATTCTGCAGTaGAGAGCGGTCCACCCAAGGCCACGCTGTGTCTTCCATGAATAT | + |
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Preference number: 5 (lower is better) Translates to: TAPWELESQFKEILQ*RAVHPRPRCVFHEY Trigger: ATATTCATGGAAGACACAGCGTGGCCTTGGGTGGACCGCTCTTCACTGCAGAATTTCCTTGAATTGACTTTCCAGTTCCCAAGGTGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS GCA 90 bp | CTCTGCTTTCGTGTGGGCCGTGTCCTTAGCATTCCTCACTATCATTaGCTTTTTAAGCACCTTCATGGCAAATATCTTCCCAGTATTTGC | + |
|
Preference number: 5 (lower is better) Translates to: LCFRVGRVLSIPHYH*LFKHLHGKYLPSIC Trigger: GCAAATACTGGGAAGATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTGAGGAATGCTAAGGACACGGCCCACACGAAAGCAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058286.9 ENSMUST00000154617.8 |
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| CDS-3UTR CAA 90 bp | CATCCTATCCTCAAATCTCAAACTATCTCAAAAACGGTATGTGGGAAAATTCTTTCCCCAGGAGAGAATTaGACTGGGCTGACAGGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: HPILKSQTISKTVCGKILSPGEN*TGLTGV Trigger: AACACCTGTCAGCCCAGTCAAATTCTCTCCTGGGGA...AAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTTGAGGATAGGATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154617.8 |
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| CDS CCA 72 bp | TCCTCCAGCTCATCCTCAGAGCCTGCATCTTCTGGCTaGTCCAGGTCTATGTCAAACACTCCTGCCATGTCC | + |
|
Preference number: 6 (lower is better) Translates to: SSSSSSEPASSG*SRSMSNTPAMS Trigger: GGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAAGATGCAGGCTCTGAGGATGAGCTGGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058286.9 ENSMUST00000154617.8 |
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| CDS GCA 72 bp | ATCTTCTGGCTGGTCCAGGTCTATGTCAAACACTCCTaGCATGTCCTCAGCTTCCCTGTGTCGGAAGTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: IFWLVQVYVKHS*HVLSFPVSEVR Trigger: CCTGACTTCCGACACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058286.9 ENSMUST00000154617.8 |
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| CDS GCA 72 bp | CACCTTGGGAACTGGAAAGTCAATTCAAGGAAATTCTaGAGTGAAGAGCGGTCCACCCAAGGCCACGCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: HLGNWKVNSRKF*SEERSTQGHAV Trigger: CACAGCGTGGCCTTGGGTGGACCGCTCTTCACTGCAGAATTTCCTTGAATTGACTTTCCAGTTCCCAAGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS TCA 72 bp | TGGGAACTGGAAAGTCAATTCAAGGAAATTCTGCAGTaGAGAGCGGTCCACCCAAGGCCACGCTGTGTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: WELESQFKEILQ*RAVHPRPRCVF Trigger: GAAGACACAGCGTGGCCTTGGGTGGACCGCTCTTCACTGCAGAATTTCCTTGAATTGACTTTCCAGTTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058286.9 |
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| CDS GCA 72 bp | CGTGTGGGCCGTGTCCTTAGCATTCCTCACTATCATTaGCTTTTTAAGCACCTTCATGGCAAATATCTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: RVGRVLSIPHYH*LFKHLHGKYLP Trigger: GGGAAGATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTGAGGAATGCTAAGGACACGGCCCACACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058286.9 ENSMUST00000154617.8 |
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