Pregenerated sensors for RPS3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030744Ensembl transcript IDs: ENSMUST00000032998.13, ENSMUST00000107096.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGTAGAAACTCCCTTTTTATCTTGGGATGCTGAGCGGCTGTGTTaGCATACTCTCTCCTGCAGGGCTGTGTGCATGACAAACCAGCAC | + |
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Preference number: 1 (lower is better) Translates to: AVETPFLSWDAERLC*HTLSCRAVCMTNQH Trigger: GTGCTGGTTTGTCATGCACACAGCCCTGCAGGAGAGAGTATGGCAACACAGCCGCTCAGCATCCCAAGATAAAAAGGGAGTTTCTACTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR GCA 90 bp | TTTTTATCTTGGGATGCTGAGCGGCTGTGTTGCCATACTCTCTCCTaGAGGGCTGTGTGCATGACAAACCAGCACACATGCTTTCATAGG | + |
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Preference number: 1 (lower is better) Translates to: FLSWDAERLCCHTLS*RAVCMTNQHTCFHR Trigger: CCTATGAAAGCATGTGTGCTGGTTTGTCATGCACACAGCCCTGCAGGAGAGAGTATGGCAACACAGCCGCTCAGCATCCCAAGATAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR TCA 90 bp | TGCTCTTCTAACCCTCAATTGTTCAACACAGGGTCACCAACTTCATaGCTTCTCTGGTCAGCTCTGCTCATGCCCTCCAGCTTAAACCAA | + |
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Preference number: 1 (lower is better) Translates to: CSSNPQLFNTGSPTS*LLWSALLMPSSLNQ Trigger: TTGGTTTAAGCTGGAGGGCATGAGCAGAGCTGACCAGAGAAGTCATGAAGTTGGTGACCCTGTGTTGAACAATTGAGGGTTAGAAGAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR CCA 90 bp | ATGAATTTTCCAAAACAGCGTCTAAGTACAGGACTTAGAAATATATaGATCGCCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTG | + |
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Preference number: 1 (lower is better) Translates to: MNFPKQRLSTGLRNI*IARGRWISEFKASL Trigger: CAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGGCGATCCATATATTTCTAAGTCCTGTACTTAGACGCTGTTTTGGAAAATTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR-3UTR GCA 90 bp | GGACTTAGAAATATATGGATCGCCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCTGCCATACTCTCTCCTaGAGGGCTGTGTGCATGACA | + |
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Preference number: 2 (lower is better) Translates to: GLRNIWIARGRWISEFKACHTLS*RAVCMT Trigger: TGTCATGCACACAGCCCTGCAGGAGAGAGTATGGCA...GGCCTTGAACTCAGAAATCCACCTGCCTCTGGCGATCCATATATTTCTAAGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR-3UTR CCA 90 bp | TGCCATACTCTCTCCTGCAGGGCTGTGTGCATGACAAACCAGCACACATGCTTTAACTCAGTTGAATACTaGACACAATCCAGTCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: CHTLSCRAVCMTNQHTCFNSVEY*TQSSQA Trigger: GGCCTGACTGGATTGTGTCCAGTATTCAACTGAGTT...AAAGCATGTGTGCTGGTTTGTCATGCACACAGCCCTGCAGGAGAGAGTATGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR-3UTR GCA 90 bp | ACCGGGCTGACAGCTTCACTCTCACCAAACAGAAAAGAATTCCCAAGCTATCATACTCGCTGGGCCATCTaGTTTCATTCTAGAGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: TGLTASLSPNRKEFPSYHTRWAI*FHSREK Trigger: TTTTTCTCTAGAATGAAAGCAGATGGCCCAGCGAGT...ATGATAGCTTGGGAATTCTTTTCTGTTTGGTGAGAGTGAAGCTGTCAGCCCGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR-3UTR GCA 90 bp | AACCGGGCTGACAGCTTCACTCTCACCAAACAGAAAAGAATTCCCAAGCTATCACTTTATTTTATTAAATaGCTCCAGATGCAGCTGCCA | + |
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Preference number: 2 (lower is better) Translates to: NRADSFTLTKQKRIPKLSLYFIK*LQMQLP Trigger: TGGCAGCTGCATCTGGAGGCATTTAATAAAATAAAG...TGATAGCTTGGGAATTCTTTTCTGTTTGGTGAGAGTGAAGCTGTCAGCCCGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR-3UTR GCA 90 bp | GAGGCAGAGGCCAGCCAGGGCTACACATTAACACTTTCTAAAAAGGTACATCTGCACACCAACAGTAAATaGTTCCAAAATGAATTTTCC | + |
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Preference number: 2 (lower is better) Translates to: EAEASQGYTLTLSKKVHLHTNSK*FQNEFS Trigger: GGAAAATTCATTTTGGAAGCATTTACTGTTGGTGTG...CAGATGTACCTTTTTAGAAAGTGTTAATGTGTAGCCCTGGCTGGCCTCTGCCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000032998.13 ENSMUST00000107096.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCAGGGCTACACATTAACACTTTCTAAAAAGGTACATCTGTACTCATCATGTGCACCAAAACCAAACTaGTCTTCTAACCCTCAATTG | + |
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Preference number: 2 (lower is better) Translates to: SQGYTLTLSKKVHLYSSCAPKPN*SSNPQL Trigger: CAATTGAGGGTTAGAAGAGCAGTTTGGTTTTGGTGC...ACATGATGAGTACAGATGTACCTTTTTAGAAAGTGTTAATGTGTAGCCCTGGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR GCA 72 bp | TGGGATGCTGAGCGGCTGTGTTGCCATACTCTCTCCTaGAGGGCTGTGTGCATGACAAACCAGCACACATGC | + |
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Preference number: 3 (lower is better) Translates to: WDAERLCCHTLS*RAVCMTNQHTC Trigger: GCATGTGTGCTGGTTTGTCATGCACACAGCCCTGCAGGAGAGAGTATGGCAACACAGCCGCTCAGCATCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR GCA 72 bp | CGGCTGTGTTGCCATACTCTCTCCTGCAGGGCTGTGTaGATGACAAACCAGCACACATGCTTTCATAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: RLCCHTLSCRAV*MTNQHTCFHRK Trigger: CTTCCTATGAAAGCATGTGTGCTGGTTTGTCATGCACACAGCCCTGCAGGAGAGAGTATGGCAACACAGCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR GCA 72 bp | ACTCCCTTTTTATCTTGGGATGCTGAGCGGCTGTGTTaGCATACTCTCTCCTGCAGGGCTGTGTGCATGACA | + |
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Preference number: 3 (lower is better) Translates to: TPFLSWDAERLC*HTLSCRAVCMT Trigger: TGTCATGCACACAGCCCTGCAGGAGAGAGTATGGCAACACAGCCGCTCAGCATCCCAAGATAAAAAGGGAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR TCA 72 bp | AACCCTCAATTGTTCAACACAGGGTCACCAACTTCATaGCTTCTCTGGTCAGCTCTGCTCATGCCCTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: NPQLFNTGSPTS*LLWSALLMPSS Trigger: GCTGGAGGGCATGAGCAGAGCTGACCAGAGAAGTCATGAAGTTGGTGACCCTGTGTTGAACAATTGAGGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR TCA 72 bp | TGTGTTGCCATACTCTCTCCTGCAGGGCTGTGTGCATaGCAAACCAGCACACATGCTTTCATAGGAAGCACC | + |
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Preference number: 3 (lower is better) Translates to: CVAILSPAGLCA*QTSTHAFIGST Trigger: GGTGCTTCCTATGAAAGCATGTGTGCTGGTTTGTCATGCACACAGCCCTGCAGGAGAGAGTATGGCAACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR GCA 72 bp | AGCACCTGGGTTCCATCAAGAGCACCAAAACCAAACTaGTCTTCTAACCCTCAATTGTTCAACACAGGGTCA | + |
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Preference number: 3 (lower is better) Translates to: STWVPSRAPKPN*SSNPQLFNTGS Trigger: TGACCCTGTGTTGAACAATTGAGGGTTAGAAGAGCAGTTTGGTTTTGGTGCTCTTGATGGAACCCAGGTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR CCA 72 bp | ACAGGACTTAGAAATATATGGATCGCCAGAGGCAGGTaGATTTCTGAGTTCAAGGCCAGCCTGGTCTACATA | + |
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Preference number: 3 (lower is better) Translates to: TGLRNIWIARGR*ISEFKASLVYI Trigger: TATGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGGCGATCCATATATTTCTAAGTCCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR CCA 72 bp | ACTCTGTCTTATGTGTGCTTACTATGTCCAAGCACCTaGGTTCCATCAAGAGCACCAAAACCAAACTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: TLSYVCLLCPST*VPSRAPKPNCS Trigger: AGAGCAGTTTGGTTTTGGTGCTCTTGATGGAACCCAGGTGCTTGGACATAGTAAGCACACATAAGACAGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR CCA 72 bp | GCATGGCTCCATAGACAACATAACTCAGTTGAATACTaGACACAATCCAGTCAGGCCTTGTCTTTGTTCAAG | + |
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Preference number: 3 (lower is better) Translates to: AWLHRQHNSVEY*TQSSQALSLFK Trigger: CTTGAACAAAGACAAGGCCTGACTGGATTGTGTCCAGTATTCAACTGAGTTATGTTGTCTATGGAGCCATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR CCA 72 bp | CCAAAACAGCGTCTAAGTACAGGACTTAGAAATATATaGATCGCCAGAGGCAGGTGGATTTCTGAGTTCAAG | + |
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Preference number: 3 (lower is better) Translates to: PKQRLSTGLRNI*IARGRWISEFK Trigger: CTTGAACTCAGAAATCCACCTGCCTCTGGCGATCCATATATTTCTAAGTCCTGTACTTAGACGCTGTTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| CDS-3UTR CCA 90 bp | GAGGCAGAGGCCAGCCAGGGCTACACATTAACACTTTCTAAAAAGGTACATCTGGCTGTAGGCACTGGCTaGGGCATGGCTGGTGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: EAEASQGYTLTLSKKVHLAVGTG*GMAGGS Trigger: AGAGCCACCAGCCATGCCCCAGCCAGTGCCTACAGC...CAGATGTACCTTTTTAGAAAGTGTTAATGTGTAGCCCTGGCTGGCCTCTGCCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| CDS-3UTR TCA 90 bp | GAGGCAGAGGCCAGCCAGGGCTACACATTAACACTTTCTAAAAAGGTACATCTGAGGCAGGTGGATTTCTaGGTTCAAGGCCAGCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: EAEASQGYTLTLSKKVHLRQVDF*VQGQLC Trigger: ACACAGCTGGCCTTGAACTCAGAAATCCACCTGCCT...CAGATGTACCTTTTTAGAAAGTGTTAATGTGTAGCCCTGGCTGGCCTCTGCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107096.2 |
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| CDS-3UTR GCA 90 bp | GGACTTAGAAATATATGGATCGCCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCTGTGGCCACTTTCTCTaGATAAAGCTCTACGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: GLRNIWIARGRWISEFKACGHFL*IKLYAA Trigger: GGCAGCGTAGAGCTTTATGCAGAGAAAGTGGCCACA...GGCCTTGAACTCAGAAATCCACCTGCCTCTGGCGATCCATATATTTCTAAGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| CDS-3UTR CCA 90 bp | ACAACCGGGCTGACAGCTTCACTCTCACCAAACAGAAAAGAATTCCCAAGCTATATCGCCAGAGGCAGGTaGATTTCTGAGTTCAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TTGLTASLSPNRKEFPSYIARGR*ISEFKA Trigger: GGCCTTGAACTCAGAAATCCACCTGCCTCTGGCGAT...ATAGCTTGGGAATTCTTTTCTGTTTGGTGAGAGTGAAGCTGTCAGCCCGGTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107096.2 |
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| CDS-3UTR GCA 90 bp | ACAACCGGGCTGACAGCTTCACTCTCACCAAACAGAAAAGAATTCCCAAGCTATTGTGGCCACTTTCTCTaGATAAAGCTCTACGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: TTGLTASLSPNRKEFPSYCGHFL*IKLYAA Trigger: GGCAGCGTAGAGCTTTATGCAGAGAAAGTGGCCACA...ATAGCTTGGGAATTCTTTTCTGTTTGGTGAGAGTGAAGCTGTCAGCCCGGTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032998.13 ENSMUST00000107096.2 |
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| CDS-3UTR CCA 90 bp | TGGATCCTTAAAACATATGGACAGGCTTTACATTTCAAACTCCCAAGCTCAAAATGTCTGAGGAGCACATaGCGCACAGCTGTGTCGACA | + |
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Preference number: 4 (lower is better) Translates to: WILKTYGQALHFKLPSSKCLRST*RTAVST Trigger: TGTCGACACAGCTGTGCGCCATGTGCTCCTCAGACA...TTTTGAGCTTGGGAGTTTGAAATGTAAAGCCTGTCCATATGTTTTAAGGATCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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| 3UTR CAA 72 bp | CAGAATAAGCATGGCTCCATAGACAACATAACTCAGTaGAATACTGGACACAATCCAGTCAGGCCTTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: QNKHGSIDNITQ*NTGHNPVRPCL Trigger: AAGACAAGGCCTGACTGGATTGTGTCCAGTATTCAACTGAGTTATGTTGTCTATGGAGCCATGCTTATTCTG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032998.13 |
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