Pregenerated sensors for RPS28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067288

Ensembl transcript IDs: ENSMUST00000087342.13, ENSMUST00000173019.8, ENSMUST00000173844.8, ENSMUST00000173879.8

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	GGCCTCCTTGGCAGGTGTGAACTGAACCCCCGTTTGAGGGAGGCTTaGATTGCTCTGAATCAGCAGCTGAACCGGCCACGTGGAGTCACC	+
Preference number: 1 (lower is better) Translates to: GLLGRCELNPRLREA*IALNQQLNRPRGVT Trigger: GGTGACTCCACGTGGCCGGTTCAGCTGCTGATTCAGAGCAATGCAAGCCTCCCTCAAACGGGGGTTCAGTTCACACCTGCCAAGGAGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173019.8
3UTR-3UTR GCA 90 bp	GGGCTAAGTAGTGGATATCCAGAACCCTGTAAACAGACCCAAGCATTAGATAGAGTCCCTCCCAAGGGTTaGCACTTACCCACCAGCTGC	+
Preference number: 2 (lower is better) Translates to: GLSSGYPEPCKQTQALDRVPPKG*HLPTSC Trigger: GCAGCTGGTGGGTAAGTGGCAACCCTTGGGAGGGAC...TCTATCTAATGCTTGGGTCTGTTTACAGGGTTCTGGATATCCACTACTTAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173879.8
3UTR GCA 72 bp	GGCAGGTGTGAACTGAACCCCCGTTTGAGGGAGGCTTaGATTGCTCTGAATCAGCAGCTGAACCGGCCACGT	+
Preference number: 3 (lower is better) Translates to: GRCELNPRLREA*IALNQQLNRPR Trigger: ACGTGGCCGGTTCAGCTGCTGATTCAGAGCAATGCAAGCCTCCCTCAAACGGGGGTTCAGTTCACACCTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173019.8
3UTR TCA 72 bp	AGGATTCTGAGTCTAGACTGGCCTCCTTGGCAGGTGTaGACTGAACCCCCGTTTGAGGGAGGCTTGCATTGC	+
Preference number: 3 (lower is better) Translates to: RILSLDWPPWQV*TEPPFEGGLHC Trigger: GCAATGCAAGCCTCCCTCAAACGGGGGTTCAGTTCACACCTGCCAAGGAGGCCAGTCTAGACTCAGAATCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173019.8
3UTR-3UTR CAA 90 bp	AGTAGTGGATATCCAGAACCCTGTAAACAGACCCAAGCATTAGATAGAGTGCCTAGTCCCTCCCAAGGGTaGCCACTTACCCACCAGCTG	+
Preference number: 3 (lower is better) Translates to: SSGYPEPCKQTQALDRVPSPSQG*PLTHQL Trigger: CAGCTGGTGGGTAAGTGGCAACCCTTGGGAGGGACT...AGGCACTCTATCTAATGCTTGGGTCTGTTTACAGGGTTCTGGATATCCACTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173879.8
CDS-3UTR CAA 90 bp	CGTGAGTGTGGGCCAGATTTCTACTCTCCGACAGAGTTTCCCACCAGCTGCAAGTCTCGAACGGGGCCTTaGACATTTCGGATGATAGAG	+
Preference number: 5 (lower is better) Translates to: RECGPDFYSPTEFPTSCKSRTGP*TFRMIE Trigger: CTCTATCATCCGAAATGTCAAAGGCCCCGTTCGAGA...CTTGCAGCTGGTGGGAAACTCTGTCGGAGAGTAGAAATCTGGCCCACACTCACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173019.8
CDS-3UTR CAA 90 bp	AGTTGCAGATCATTCCGTGGGCTAAGTAGTGGATATCCAGAACCCAGCTGCAAGTCTCGAACGGGGCCTTaGACATTTCGGATGATAGAG	+
Preference number: 5 (lower is better) Translates to: SCRSFRGLSSGYPEPSCKSRTGP*TFRMIE Trigger: CTCTATCATCCGAAATGTCAAAGGCCCCGTTCGAGA...CTTGCAGCTGGGTTCTGGATATCCACTACTTAGCCCACGGAATGATCTGCAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087342.13
CDS-3UTR CAA 90 bp	TTTAACAGTTGCAGATCATTCCGTGGGCTAAGTAGTGGATATCCAGAACCCCACTCTCGAACGGGGCCTTaGACATTTCGGATGATAGAG	+
Preference number: 5 (lower is better) Translates to: FNSCRSFRGLSSGYPEPHSRTGP*TFRMIE Trigger: CTCTATCATCCGAAATGTCAAAGGCCCCGTTCGAGA...GTGGGGTTCTGGATATCCACTACTTAGCCCACGGAATGATCTGCAACTGTTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173844.8
CDS-3UTR CAA 90 bp	TTTAACAGTTGCAGATCATTCCGTGGGCTAAGTAGTGGATATCCAGAACCCTGTTCTCGAACGGGGCCTTaGACATTTCGGATGATAGAG	+
Preference number: 5 (lower is better) Translates to: FNSCRSFRGLSSGYPEPCSRTGP*TFRMIE Trigger: CTCTATCATCCGAAATGTCAAAGGCCCCGTTCGAGA...ACAGGGTTCTGGATATCCACTACTTAGCCCACGGAATGATCTGCAACTGTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173879.8