Pregenerated sensors for RPS27 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090733Ensembl transcript IDs: ENSMUST00000196205.5
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACTTGACCCCAAAGGGACCACTCTTCTGTTTGCCCTGGGATATGTaGGGCACCACTTGCTACCAGTTAAACAAGACAAACATTATATAT | + |
|
Preference number: 1 (lower is better) Translates to: YLTPKGPLFCLPWDM*GTTCYQLNKTNIIY Trigger: ATATATAATGTTTGTCTTGTTTAACTGGTAGCAAGTGGTGCCTCACATATCCCAGGGCAAACAGAAGAGTGGTCCCTTTGGGGTCAAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196205.5 |
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| 3UTR TCA 72 bp | TGCCCCCAATGGACTCTAGGTGTTTGGCCACTTACTTaGCCCCAAAGGGACCACTCTTCTGTTTGCCCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: CPQWTLGVWPLT*PQRDHSSVCPG Trigger: CCCAGGGCAAACAGAAGAGTGGTCCCTTTGGGGTCAAGTAAGTGGCCAAACACCTAGAGTCCATTGGGGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196205.5 |
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| 3UTR TCA 72 bp | CCAAAGGGACCACTCTTCTGTTTGCCCTGGGATATGTaGGGCACCACTTGCTACCAGTTAAACAAGACAAAC | + |
|
Preference number: 3 (lower is better) Translates to: PKGPLFCLPWDM*GTTCYQLNKTN Trigger: GTTTGTCTTGTTTAACTGGTAGCAAGTGGTGCCTCACATATCCCAGGGCAAACAGAAGAGTGGTCCCTTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196205.5 |
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| 3UTR CAA 72 bp | ATGCCCCCAATGGACTCTAGGTGTTTGGCCACTTACTaGACCCCAAAGGGACCACTCTTCTGTTTGCCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: MPPMDSRCLATY*TPKGPLFCLPW Trigger: CCAGGGCAAACAGAAGAGTGGTCCCTTTGGGGTCAAGTAAGTGGCCAAACACCTAGAGTCCATTGGGGGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196205.5 |
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| 3UTR CAA 72 bp | ACTCTTCTGTTTGCCCTGGGATATGTGAGGCACCACTaGCTACCAGTTAAACAAGACAAACATTATATATCC | + |
|
Preference number: 4 (lower is better) Translates to: TLLFALGYVRHH*LPVKQDKHYIS Trigger: GGATATATAATGTTTGTCTTGTTTAACTGGTAGCAAGTGGTGCCTCACATATCCCAGGGCAAACAGAAGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196205.5 |
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