Pregenerated sensors for RPS25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009927Ensembl transcript IDs: ENSMUST00000080300.9, ENSMUST00000216867.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGGGAAAAGCTGAAGGTTCCCAGGCGCAATTGCATCTGACTTCATaGCCAACAAACCAATTCCAGCTATTATTCCTAAGACCAAATCCT | + |
|
Preference number: 1 (lower is better) Translates to: KGKAEGSQAQLHLTS*PTNQFQLLFLRPNP Trigger: AGGATTTGGTCTTAGGAATAATAGCTGGAATTGGTTTGTTGGCCATGAAGTCAGATGCAATTGCGCCTGGGAACCTTCAGCTTTTCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080300.9 |
||
| 3UTR-3UTR GCA 90 bp | CTGCAACAAGAAGCAAGCAACCACGTAAAGGGAAAAGCTGAAGGTTCCCAGGCGCAAATCCTCCCCGGCTaGCTTAGGAAACAGATGCAC | + |
|
Preference number: 2 (lower is better) Translates to: LQQEASNHVKGKAEGSQAQILPG*LRKQMH Trigger: GTGCATCTGTTTCCTAAGGCAGCCGGGGAGGATTTG...CGCCTGGGAACCTTCAGCTTTTCCCTTTACGTGGTTGCTTGCTTCTTGTTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080300.9 |
||
| 3UTR CAA 90 bp | GCAAGCAACCACGTAAAGGGAAAAGCTGAAGGTTCCCAGGCGCAATaGCATCTGACTTCATGGCCAACAAACCAATTCCAGCTATTATTC | + |
|
Preference number: 2 (lower is better) Translates to: ASNHVKGKAEGSQAQ*HLTSWPTNQFQLLF Trigger: GAATAATAGCTGGAATTGGTTTGTTGGCCATGAAGTCAGATGCAATTGCGCCTGGGAACCTTCAGCTTTTCCCTTTACGTGGTTGCTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080300.9 |
||
| 3UTR TCA 72 bp | GCAACAAGAAGCAAGCAACCACGTAAAGGGAAAAGCTaGAGGTTCCCAGGCGCAATTGCATCTGACTTCATG | + |
|
Preference number: 3 (lower is better) Translates to: ATRSKQPRKGKS*RFPGAIASDFM Trigger: CATGAAGTCAGATGCAATTGCGCCTGGGAACCTTCAGCTTTTCCCTTTACGTGGTTGCTTGCTTCTTGTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080300.9 |
||
| 3UTR TCA 72 bp | AAAGTCATAACCGCAACATCTCATAAAGGGCACGAGTaGTACTTCTACACCAAGAAACTTTTCTTCCCACCT | + |
|
Preference number: 3 (lower is better) Translates to: KVITATSHKGHE*YFYTKKLFFPP Trigger: AGGTGGGAAGAAAAGTTTCTTGGTGTAGAAGTATCACTCGTGCCCTTTATGAGATGTTGCGGTTATGACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216867.2 |
||
| CDS-3UTR CCA 90 bp | CCAGGCGCAATTGCATCTGACTTCATGGCCAACAAACCAATTCCAGCTATTATTACCAGATTTATTTACTaGGTCTTTATCCTTTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: PGAIASDFMANKPIPAIITRFIY*VFILFG Trigger: GCCAAAAAGGATAAAGACCCAGTAAATAAATCTGGT...AATAATAGCTGGAATTGGTTTGTTGGCCATGAAGTCAGATGCAATTGCGCCTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080300.9 |
||
| CDS-3UTR CCA 90 bp | CTCATAAAGGGCACGAGTGATACTTCTACACCAAGAAACTTTTCTTCCCACCTGACCAGATTTATTTACTaGGTCTTTATCCTTTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LIKGTSDTSTPRNFSSHLTRFIY*VFILFG Trigger: GCCAAAAAGGATAAAGACCCAGTAAATAAATCTGGT...CAGGTGGGAAGAAAAGTTTCTTGGTGTAGAAGTATCACTCGTGCCCTTTATGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216867.2 |
||
| CDS-3UTR CAA 90 bp | AGCAACCACGTAAAGGGAAAAGCTGAAGGTTCCCAGGCGCAATTGCATCTGACTTCGAACAGGACAAGATaGTTCAACTTGTCCCGAACT | + |
|
Preference number: 5 (lower is better) Translates to: SNHVKGKAEGSQAQLHLTSNRTR*FNLSRT Trigger: AGTTCGGGACAAGTTGAACAATCTTGTCCTGTTCGA...AGTCAGATGCAATTGCGCCTGGGAACCTTCAGCTTTTCCCTTTACGTGGTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080300.9 |
||
| CDS-3UTR CAA 90 bp | TTCCCAGGCGCAATTGCATCTGACTTCATGGCCAACAAACCAATTCCAGCTATTTTCTTCTTCTTGGCCTaGCCACCAGATTTATTTACT | + |
|
Preference number: 5 (lower is better) Translates to: FPGAIASDFMANKPIPAIFFFLA*PPDLFT Trigger: AGTAAATAAATCTGGTGGCAAGGCCAAGAAGAAGAA...AATAGCTGGAATTGGTTTGTTGGCCATGAAGTCAGATGCAATTGCGCCTGGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080300.9 |
||
| CDS-3UTR CAA 90 bp | CATCTCATAAAGGGCACGAGTGATACTTCTACACCAAGAAACTTTTCTTCCCACTCGAACAGGACAAGATaGTTCAACTTGTCCCGAACT | + |
|
Preference number: 5 (lower is better) Translates to: HLIKGTSDTSTPRNFSSHSNRTR*FNLSRT Trigger: AGTTCGGGACAAGTTGAACAATCTTGTCCTGTTCGA...GTGGGAAGAAAAGTTTCTTGGTGTAGAAGTATCACTCGTGCCCTTTATGAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216867.2 |
||
| CDS-3UTR CAA 90 bp | CTCATAAAGGGCACGAGTGATACTTCTACACCAAGAAACTTTTCTTCCCACCTGTTCTTCTTCTTGGCCTaGCCACCAGATTTATTTACT | + |
|
Preference number: 5 (lower is better) Translates to: LIKGTSDTSTPRNFSSHLFFFLA*PPDLFT Trigger: AGTAAATAAATCTGGTGGCAAGGCCAAGAAGAAGAA...CAGGTGGGAAGAAAAGTTTCTTGGTGTAGAAGTATCACTCGTGCCCTTTATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216867.2 |
||