Pregenerated sensors for RPS23RG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000065952Ensembl transcript IDs: ENSMUST00000086479.7, ENSMUST00000136592.2, ENSMUST00000151633.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTGGAGGGGACCTTCATGCTCAGATTCACACATTTCTCTTCTGTTaGCCCAGCCCCTTGCACCATGCAGCATTACTCAGTGGCTGCAGC | + |
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Preference number: 1 (lower is better) Translates to: PGGDLHAQIHTFLFC*PSPLHHAALLSGCS Trigger: GCTGCAGCCACTGAGTAATGCTGCATGGTGCAAGGGGCTGGGTCAACAGAAGAGAAATGTGTGAATCTGAGCATGAAGGTCCCCTCCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR TCA 90 bp | AGACACAGCTTGGTCAGTGTTCACTATGGCAGCTGCTGTGGCTGGTaGGAGTATTTTATCAGTGCCTCCCAGTGTCTCTTAGGCAGAGGA | + |
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Preference number: 1 (lower is better) Translates to: RHSLVSVHYGSCCGW*EYFISASQCLLGRG Trigger: TCCTCTGCCTAAGAGACACTGGGAGGCACTGATAAAATACTCTCACCAGCCACAGCAGCTGCCATAGTGAACACTGACCAAGCTGTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR GCA 90 bp | GAGTATTTTATCAGTGCCTCCCAGTGTCTCTTAGGCAGAGGACCGTaGAGAAGTTACTCTGTAAGTTTGCAGAAGGGAAGCCCCTGGAGG | + |
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Preference number: 1 (lower is better) Translates to: EYFISASQCLLGRGP*RSYSVSLQKGSPWR Trigger: CCTCCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACTTCTGCACGGTCCTCTGCCTAAGAGACACTGGGAGGCACTGATAAAATACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR GCA 90 bp | TGTTCACTATGGCAGCTGCTGTGGCTGGTGAGAGTATTTTATCAGTaGCTCCCAGTGTCTCTTAGGCAGAGGACCGTGCAGAAGTTACTC | + |
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Preference number: 1 (lower is better) Translates to: CSLWQLLWLVRVFYQ*LPVSLRQRTVQKLL Trigger: GAGTAACTTCTGCACGGTCCTCTGCCTAAGAGACACTGGGAGGCACTGATAAAATACTCTCACCAGCCACAGCAGCTGCCATAGTGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR CCA 90 bp | GGACCGTGCAGAAGTTACTCTGTAAGTTTGCAGAAGGGAAGCCCCTaGAGGGGACCTTCATGCTCAGATTCACACATTTCTCTTCTGTTG | + |
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Preference number: 1 (lower is better) Translates to: GPCRSYSVSLQKGSP*RGPSCSDSHISLLL Trigger: CAACAGAAGAGAAATGTGTGAATCTGAGCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACTTCTGCACGGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR GCA 90 bp | GGTGTTTGTCCACTTACATATCTGTGCCTGAAATCACATAGAAGTTaGTTGCCTGTGGTGTCATGCAGTGGGTTTTCAACTCCATTACTT | + |
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Preference number: 1 (lower is better) Translates to: GVCPLTYLCLKSHRS*LPVVSCSGFSTPLL Trigger: AAGTAATGGAGTTGAAAACCCACTGCATGACACCACAGGCAAGCAACTTCTATGTGATTTCAGGCACAGATATGTAAGTGGACAAACACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086479.7 ENSMUST00000151633.2 |
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| 3UTR GCA 90 bp | TATCTGTGCCTGAAATCACATAGAAGTTGCTTGCCTGTGGTGTCATaGAGTGGGTTTTCAACTCCATTACTTGTTTTAAAGTTATATTTA | + |
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Preference number: 1 (lower is better) Translates to: YLCLKSHRSCLPVVS*SGFSTPLLVLKLYL Trigger: TAAATATAACTTTAAAACAAGTAATGGAGTTGAAAACCCACTGCATGACACCACAGGCAAGCAACTTCTATGTGATTTCAGGCACAGATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086479.7 ENSMUST00000151633.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCACCTATGTGGAGGTCAGAGAACAGCATGGGCCCTGGGGGTCAATCTCAGACAGAAGGGAAGCCCCTaGAGGGGACCTTCATGCTCA | + |
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Preference number: 2 (lower is better) Translates to: GHLCGGQRTAWALGVNLRQKGSP*RGPSCS Trigger: TGAGCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTG...TCTGAGATTGACCCCCAGGGCCCATGCTGTTCTCTGACCTCCACATAGGTGCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR CAA 90 bp | CCCTGGAGGGGACCTTCATGCTCAGATTCACACATTTCTCTTCTGTaGACCCAGCCCCTTGCACCATGCAGCATTACTCAGTGGCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: PWRGPSCSDSHISLL*TQPLAPCSITQWLQ Trigger: CTGCAGCCACTGAGTAATGCTGCATGGTGCAAGGGGCTGGGTCAACAGAAGAGAAATGTGTGAATCTGAGCATGAAGGTCCCCTCCAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR GCA 90 bp | GGGGCACCTATGTGGAGGTCAGAGAACAGCATGGGCCCTGGGGGTCAATCTCAGAGAGTATTTTATCAGTaGCTCCCAGTGTCTCTTAGG | + |
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Preference number: 2 (lower is better) Translates to: GAPMWRSENSMGPGGQSQRVFYQ*LPVSLR Trigger: CCTAAGAGACACTGGGAGGCACTGATAAAATACTCT...CTGAGATTGACCCCCAGGGCCCATGCTGTTCTCTGACCTCCACATAGGTGCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR CAA 90 bp | CAGTGTCTCTTAGGCAGAGGACCGTGCAGAAGTTACTCTGTAAGTTaGCAGAAGGGAAGCCCCTGGAGGGGACCTTCATGCTCAGATTCA | + |
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Preference number: 2 (lower is better) Translates to: QCLLGRGPCRSYSVS*QKGSPWRGPSCSDS Trigger: TGAATCTGAGCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACTTCTGCACGGTCCTCTGCCTAAGAGACACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGGGAAGCCCCTGGAGGGGACCTTCATGCTCAGATTCACACATTTCTCTTCTGTTGACCCAGCCCCTTaGACCATGCAGCATTACTCA | + |
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Preference number: 2 (lower is better) Translates to: EGKPLEGTFMLRFTHFSSVDPAP*TMQHYS Trigger: TGAGTAATGCTGCATGGTGCAAGGGGCTGGGTCAAC...AGAAGAGAAATGTGTGAATCTGAGCATGAAGGTCCCCTCCAGGGGCTTCCCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR GCA 90 bp | AGAAGTTACTCTGTAAGTTTGCAGAAGGGAAGCCCCTGGAGGGGACCTTCATGCGTTGACCCAGCCCCTTaGACCATGCAGCATTACTCA | + |
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Preference number: 2 (lower is better) Translates to: RSYSVSLQKGSPWRGPSCVDPAP*TMQHYS Trigger: TGAGTAATGCTGCATGGTGCAAGGGGCTGGGTCAAC...GCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGTTAGACTTGCTGGCAAGCACCTTTCTCTGCTGAGCCATCTTGCTAGCCTGCTCAGTGGCTGCAGCTaGCTCAGGATCAGATTCAGC | + |
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Preference number: 2 (lower is better) Translates to: IVRLAGKHLSLLSHLASLLSGCS*LRIRFS Trigger: GCTGAATCTGATCCTGAGCCAGCTGCAGCCACTGAG...CAGGCTAGCAAGATGGCTCAGCAGAGAAAGGTGCTTGCCAGCAAGTCTAACAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTTACTCTGTAAGTTTGCAGAAGGGAAGCCCCTGGAGGGGACCTTCATGCTCTGCAGCATTACTCAGTaGCTGCAGCTGGCTCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: KLLCKFAEGKPLEGTFMLCSITQ*LQLAQD Trigger: ATCCTGAGCCAGCTGCAGCCACTGAGTAATGCTGCA...GAGCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCAATCTCAGATTGTTAGACTTGCTGGCAAGCACCTTTCTCTGCTGAGCCATCAGAAGGGAAGCCCCTaGAGGGGACCTTCATGCTCA | + |
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Preference number: 2 (lower is better) Translates to: GQSQIVRLAGKHLSLLSHQKGSP*RGPSCS Trigger: TGAGCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTG...ATGGCTCAGCAGAGAAAGGTGCTTGCCAGCAAGTCTAACAATCTGAGATTGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR TCA 90 bp | AGAAGTTACTCTGTAAGTTTGCAGAAGGGAAGCCCCTGGAGGGGACCTTCATGCACATTTCTCTTCTGTTaGCCCAGCCCCTTGCACCAT | + |
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Preference number: 2 (lower is better) Translates to: RSYSVSLQKGSPWRGPSCTFLFC*PSPLHH Trigger: ATGGTGCAAGGGGCTGGGTCAACAGAAGAGAAATGT...GCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR GCA 90 bp | GCATGGGCCCTGGGGGTCAATCTCAGATTGTTAGACTTGCTGGCAAGCACCTTTTTAGGCAGAGGACCGTaGAGAAGTTACTCTGTAAGT | + |
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Preference number: 2 (lower is better) Translates to: AWALGVNLRLLDLLASTFLGRGP*RSYSVS Trigger: ACTTACAGAGTAACTTCTGCACGGTCCTCTGCCTAA...AAAGGTGCTTGCCAGCAAGTCTAACAATCTGAGATTGACCCCCAGGGCCCATGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGTTAGACTTGCTGGCAAGCACCTTTCTCTGCTGAGCCATCTTGCTAGCCTGCTTGATTGTCTGATGTaGCACAAGACACAGCTTGGT | + |
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Preference number: 2 (lower is better) Translates to: IVRLAGKHLSLLSHLASLLDCLM*HKTQLG Trigger: ACCAAGCTGTGTCTTGTGCCACATCAGACAATCAAG...CAGGCTAGCAAGATGGCTCAGCAGAGAAAGGTGCTTGCCAGCAAGTCTAACAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR CCA 90 bp | GAAAAAGGTGTTTGTCCACTTACATATCTGTGCCTGAAATCACATAGAAGTTGCGCACAAGACACAGCTTaGTCAGTGTTCACTATGGCA | + |
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Preference number: 2 (lower is better) Translates to: EKGVCPLTYLCLKSHRSCAQDTA*SVFTMA Trigger: TGCCATAGTGAACACTGACCAAGCTGTGTCTTGTGC...GCAACTTCTATGTGATTTCAGGCACAGATATGTAAGTGGACAAACACCTTTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000086479.7 ENSMUST00000151633.2 |
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| 3UTR-3UTR CAA 90 bp | GGGCACCTATGTGGAGGTCAGAGAACAGCATGGGCCCTGGGGGTCAATCTCAGAAGTTACTCTGTAAGTTaGCAGAAGGGAAGCCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: GHLCGGQRTAWALGVNLRSYSVS*QKGSPW Trigger: CCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACT...TCTGAGATTGACCCCCAGGGCCCATGCTGTTCTCTGACCTCCACATAGGTGCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR GCA 72 bp | TGGCAGCTGCTGTGGCTGGTGAGAGTATTTTATCAGTaGCTCCCAGTGTCTCTTAGGCAGAGGACCGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: WQLLWLVRVFYQ*LPVSLRQRTVQ Trigger: CTGCACGGTCCTCTGCCTAAGAGACACTGGGAGGCACTGATAAAATACTCTCACCAGCCACAGCAGCTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR-3UTR CAA 90 bp | GGGGCACCTATGTGGAGGTCAGAGAACAGCATGGGCCCTGGGGGTCAATCTCAGTTTGGGACTAGGTTGTaGAGAGGTGACTTGATTGTC | + |
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Preference number: 3 (lower is better) Translates to: GAPMWRSENSMGPGGQSQFGTRL*RGDLIV Trigger: GACAATCAAGTCACCTCTCAACAACCTAGTCCCAAA...CTGAGATTGACCCCCAGGGCCCATGCTGTTCTCTGACCTCCACATAGGTGCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR GCA 72 bp | AGATTCACACATTTCTCTTCTGTTGACCCAGCCCCTTaGACCATGCAGCATTACTCAGTGGCTGCAGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: RFTHFSSVDPAP*TMQHYSVAAAG Trigger: GCCAGCTGCAGCCACTGAGTAATGCTGCATGGTGCAAGGGGCTGGGTCAACAGAAGAGAAATGTGTGAATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR GCA 72 bp | ATCAGTGCCTCCCAGTGTCTCTTAGGCAGAGGACCGTaGAGAAGTTACTCTGTAAGTTTGCAGAAGGGAAGC | + |
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Preference number: 3 (lower is better) Translates to: ISASQCLLGRGP*RSYSVSLQKGS Trigger: GCTTCCCTTCTGCAAACTTACAGAGTAACTTCTGCACGGTCCTCTGCCTAAGAGACACTGGGAGGCACTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR TCA 72 bp | TTGGTCAGTGTTCACTATGGCAGCTGCTGTGGCTGGTaGGAGTATTTTATCAGTGCCTCCCAGTGTCTCTTA | + |
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Preference number: 3 (lower is better) Translates to: LVSVHYGSCCGW*EYFISASQCLL Trigger: TAAGAGACACTGGGAGGCACTGATAAAATACTCTCACCAGCCACAGCAGCTGCCATAGTGAACACTGACCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR CCA 72 bp | ATGTGGCACAAGACACAGCTTGGTCAGTGTTCACTATaGCAGCTGCTGTGGCTGGTGAGAGTATTTTATCAG | + |
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Preference number: 3 (lower is better) Translates to: MWHKTQLGQCSL*QLLWLVRVFYQ Trigger: CTGATAAAATACTCTCACCAGCCACAGCAGCTGCCATAGTGAACACTGACCAAGCTGTGTCTTGTGCCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR TCA 72 bp | TTTGGGACTAGGTTGTTGAGAGGTGACTTGATTGTCTaGTGTGGCACAAGACACAGCTTGGTCAGTGTTCAC | + |
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Preference number: 3 (lower is better) Translates to: FGTRLLRGDLIV*CGTRHSLVSVH Trigger: GTGAACACTGACCAAGCTGTGTCTTGTGCCACATCAGACAATCAAGTCACCTCTCAACAACCTAGTCCCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR CCA 72 bp | AGAAGTTACTCTGTAAGTTTGCAGAAGGGAAGCCCCTaGAGGGGACCTTCATGCTCAGATTCACACATTTCT | + |
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Preference number: 3 (lower is better) Translates to: RSYSVSLQKGSP*RGPSCSDSHIS Trigger: AGAAATGTGTGAATCTGAGCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR GCA 72 bp | CCACTTACATATCTGTGCCTGAAATCACATAGAAGTTaGTTGCCTGTGGTGTCATGCAGTGGGTTTTCAACT | + |
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Preference number: 3 (lower is better) Translates to: PLTYLCLKSHRS*LPVVSCSGFST Trigger: AGTTGAAAACCCACTGCATGACACCACAGGCAAGCAACTTCTATGTGATTTCAGGCACAGATATGTAAGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086479.7 ENSMUST00000151633.2 |
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| 3UTR GCA 72 bp | CTGAAATCACATAGAAGTTGCTTGCCTGTGGTGTCATaGAGTGGGTTTTCAACTCCATTACTTGTTTTAAAG | + |
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Preference number: 3 (lower is better) Translates to: LKSHRSCLPVVS*SGFSTPLLVLK Trigger: CTTTAAAACAAGTAATGGAGTTGAAAACCCACTGCATGACACCACAGGCAAGCAACTTCTATGTGATTTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086479.7 ENSMUST00000151633.2 |
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| CDS-3UTR CCA 90 bp | GGGCACCTATGTGGAGGTCAGAGAACAGCATGGGCCCTGGGGGTCAATCTCAGAGTGGCGCCGGCAAGATaGGCAAGTGTCGTGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: GHLCGGQRTAWALGVNLRVAPAR*ASVVVS Trigger: GGAGACCACGACACTTGCCCATCTTGCCGGCGCCAC...TCTGAGATTGACCCCCAGGGCCCATGCTGTTCTCTGACCTCCACATAGGTGCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| CDS-3UTR CCA 90 bp | CTTGCACCATGCAGCATTACTCAGTGGCTGCAGCTGGCTCAGGATCAGATTCAGGTGGCGCCGGCAAGATaGGCAAGTGTCGTGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LAPCSITQWLQLAQDQIQVAPAR*ASVVVS Trigger: GGAGACCACGACACTTGCCCATCTTGCCGGCGCCAC...CTGAATCTGATCCTGAGCCAGCTGCAGCCACTGAGTAATGCTGCATGGTGCAAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| CDS-3UTR GCA 90 bp | CAGCCCCTTGCACCATGCAGCATTACTCAGTGGCTGCAGCTGGCTCAGGATCAGGGAAGTGCGTCAGGGTaGAGCTCATTAAGAACGGGA | + |
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Preference number: 4 (lower is better) Translates to: QPLAPCSITQWLQLAQDQGSASG*SSLRTG Trigger: TCCCGTTCTTAATGAGCTGCACCCTGACGCACTTCC...CTGATCCTGAGCCAGCTGCAGCCACTGAGTAATGCTGCATGGTGCAAGGGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| CDS-3UTR CCA 90 bp | GGTCAATCTCAGATTGTTAGACTTGCTGGCAAGCACCTTTCTCTGCTGAGCCATGTGGCGCCGGCAAGATaGGCAAGTGTCGTGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: GQSQIVRLAGKHLSLLSHVAPAR*ASVVVS Trigger: GGAGACCACGACACTTGCCCATCTTGCCGGCGCCAC...ATGGCTCAGCAGAGAAAGGTGCTTGCCAGCAAGTCTAACAATCTGAGATTGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| 3UTR CAA 72 bp | TTAGGCAGAGGACCGTGCAGAAGTTACTCTGTAAGTTaGCAGAAGGGAAGCCCCTGGAGGGGACCTTCATGC | + |
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Preference number: 4 (lower is better) Translates to: LGRGPCRSYSVS*QKGSPWRGPSC Trigger: GCATGAAGGTCCCCTCCAGGGGCTTCCCTTCTGCAAACTTACAGAGTAACTTCTGCACGGTCCTCTGCCTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| CDS-3UTR GCA 90 bp | CCCCTTGCACCATGCAGCATTACTCAGTGGCTGCAGCTGGCTCAGGATCAGATTGTGCCCAATGATGGCTaGCTGAACTTCATTGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: PLAPCSITQWLQLAQDQIVPNDG*LNFIEE Trigger: TTCCTCAATGAAGTTCAGGCAGCCATCATTGGGCAC...AATCTGATCCTGAGCCAGCTGCAGCCACTGAGTAATGCTGCATGGTGCAAGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| CDS-3UTR GCA 90 bp | GTGAGAGTATTTTATCAGTGCCTCCCAGTGTCTCTTAGGCAGAGGACCGTGCAGGTGCCCAATGATGGCTaGCTGAACTTCATTGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: VRVFYQCLPVSLRQRTVQVPNDG*LNFIEE Trigger: TTCCTCAATGAAGTTCAGGCAGCCATCATTGGGCAC...CTGCACGGTCCTCTGCCTAAGAGACACTGGGAGGCACTGATAAAATACTCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| CDS-3UTR GCA 90 bp | GGTCAATCTCAGATTGTTAGACTTGCTGGCAAGCACCTTTCTCTGCTGAGCCATGGAAGTGCGTCAGGGTaGAGCTCATTAAGAACGGGA | + |
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Preference number: 4 (lower is better) Translates to: GQSQIVRLAGKHLSLLSHGSASG*SSLRTG Trigger: TCCCGTTCTTAATGAGCTGCACCCTGACGCACTTCC...ATGGCTCAGCAGAGAAAGGTGCTTGCCAGCAAGTCTAACAATCTGAGATTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086479.7 ENSMUST00000136592.2 ENSMUST00000151633.2 |
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| CDS-3UTR GCA 90 bp | GAAAAAGGTGTTTGTCCACTTACATATCTGTGCCTGAAATCACATAGAAGTTGCGTGCCCAATGATGGCTaGCTGAACTTCATTGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: EKGVCPLTYLCLKSHRSCVPNDG*LNFIEE Trigger: TTCCTCAATGAAGTTCAGGCAGCCATCATTGGGCAC...GCAACTTCTATGTGATTTCAGGCACAGATATGTAAGTGGACAAACACCTTTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000086479.7 ENSMUST00000151633.2 |
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