Pregenerated sensors for RPS20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028234Ensembl transcript IDs: ENSMUST00000138502.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | TGGCCTGCAGAGTCCATTTCAAATAACTCAGAATGGCTAATACAGTaGTCCCTGCCTTTAATTCCAGTACTCTGGGAGCAGAGGCAATCA | + |
Preference number: 1 (lower is better) Translates to: WPAESISNNSEWLIQ*SLPLIPVLWEQRQS Trigger: TGATTGCCTCTGCTCCCAGAGTACTGGAATTAAAGGCAGGGACCACTGTATTAGCCATTCTGAGTTATTTGAAATGGACTCTGCAGGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR TCA 90 bp | GAACTCAGGCTGTTAGGATTGGCAACAAATGGCTTTTACCCACTGTaGGCTACTTTCCCAGCCCTATTGTGTACACATCTACAATGCAAC | + |
Preference number: 1 (lower is better) Translates to: ELRLLGLATNGFYPL*ATFPALLCTHLQCN Trigger: GTTGCATTGTAGATGTGTACACAATAGGGCTGGGAAAGTAGCTCACAGTGGGTAAAAGCCATTTGTTGCCAATCCTAACAGCCTGAGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR CCA 90 bp | AAGTTGCAGATATGTTGCAACATGAGTAACCCAAGTAGTGTGACATaGGAGAGGCCACCCTGCCTTTCACAAATCACCTGGAAAAGCAAA | + |
Preference number: 1 (lower is better) Translates to: KLQICCNMSNPSSVT*ERPPCLSQITWKSK Trigger: TTTGCTTTTCCAGGTGATTTGTGAAAGGCAGGGTGGCCTCTCCCATGTCACACTACTTGGGTTACTCATGTTGCAACATATCTGCAACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR CCA 90 bp | TTTGACCAAGTATGGCCTGCAGAGTCCATTTCAAATAACTCAGAATaGCTAATACAGTGGTCCCTGCCTTTAATTCCAGTACTCTGGGAG | + |
Preference number: 1 (lower is better) Translates to: FDQVWPAESISNNSE*LIQWSLPLIPVLWE Trigger: CTCCCAGAGTACTGGAATTAAAGGCAGGGACCACTGTATTAGCCATTCTGAGTTATTTGAAATGGACTCTGCAGGCCATACTTGGTCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR GCA 90 bp | CTCCCCTTAGAAGCAGTTTCTTCTGGAACCTCTATGGGACACTGTTaGCAGTTTAACTTTAAACACAAAAGGGCATGGTATACAGTGCAA | + |
Preference number: 1 (lower is better) Translates to: LPLEAVSSGTSMGHC*QFNFKHKRAWYTVQ Trigger: TTGCACTGTATACCATGCCCTTTTGTGTTTAAAGTTAAACTGGCAACAGTGTCCCATAGAGGTTCCAGAAGAAACTGCTTCTAAGGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR TCA 90 bp | TTAATTTCTGCCTGTAACCCACTCATACAAGATTCACAGAATCAATaGCTCGTGGTTACTACCTGGTTAGTTATCCTTAGATTCAAGTCT | + |
Preference number: 1 (lower is better) Translates to: LISACNPLIQDSQNQ*LVVTTWLVILRFKS Trigger: AGACTTGAATCTAAGGATAACTAACCAGGTAGTAACCACGAGTCATTGATTCTGTGAATCTTGTATGAGTGGGTTACAGGCAGAAATTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR TCA 90 bp | TGGTGCAAGGAATTTAAAGCTAGAGCTGGGTGTGTTGGGAGGCACAGGCAGGCACAGCCTGGTCTACAGTaGGTTCCAGGACAGCCAGGG | + |
Preference number: 2 (lower is better) Translates to: WCKEFKARAGCVGRHRQAQPGLQ*VPGQPG Trigger: CCCTGGCTGTCCTGGAACTCACTGTAGACCAGGCTG...TGCCTGCCTGTGCCTCCCAACACACCCAGCTCTAGCTTTAAATTCCTTGCACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TGGTGCAAGGAATTTAAAGCTAGAGCTGGGTGTGTTGGGAGGCACAGGCAGGCATTCAGTTGGCCAAAGTaGCACATGCAGGCTCAAATC | + |
Preference number: 2 (lower is better) Translates to: WCKEFKARAGCVGRHRQAFSWPK*HMQAQI Trigger: GATTTGAGCCTGCATGTGCCACTTTGGCCAACTGAA...TGCCTGCCTGTGCCTCCCAACACACCCAGCTCTAGCTTTAAATTCCTTGCACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR GCA 90 bp | CAATGTCAGATGCAGAAACCTGAGACTGTAGTCAAGTGGCTTCAATGCCTTTGGTGGGAGAGGCCACCCTaGCTTTCACAAATCACCTGG | + |
Preference number: 2 (lower is better) Translates to: QCQMQKPETVVKWLQCLWWERPP*LSQITW Trigger: CCAGGTGATTTGTGAAAGGCAGGGTGGCCTCTCCCA...CCAAAGGCATTGAAGCCACTTGACTACAGTCTCAGGTTTCTGCATCTGACATTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR GCA 90 bp | CAATGTCAGATGCAGAAACCTGAGACTGTAGTCAAGTGGCTTCAATGCCTTTGGGGCCAAAGTGGCACATaGAGGCTCAAATCCCCTCAA | + |
Preference number: 2 (lower is better) Translates to: QCQMQKPETVVKWLQCLWGQSGT*RLKSPQ Trigger: TTGAGGGGATTTGAGCCTGCATGTGCCACTTTGGCC...CCAAAGGCATTGAAGCCACTTGACTACAGTCTCAGGTTTCTGCATCTGACATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGCCAAGTAGTGTGACATaGGAGAGGCCACCCTGCCTT | + |
Preference number: 2 (lower is better) Translates to: FLLHYLYVCRGPDNLWELPSSVT*ERPPCL Trigger: AAGGCAGGGTGGCCTCTCCCATGTCACACTACTTGG...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR TCA 90 bp | ACCAAAGTTCTATGGTACCTAAGCCTAGCCTCAACACTAGTTCAACTCAAACACCATCTGACACCCCTGTaGCACACACATTTACACTCA | + |
Preference number: 2 (lower is better) Translates to: TKVLWYLSLASTLVQLKHHLTPL*HTHLHS Trigger: TGAGTGTAAATGTGTGTGTCACAGGGGTGTCAGATG...GTGTTTGAGTTGAACTAGTGTTGAGGCTAGGCTTAGGTACCATAGAACTTTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR TCA 90 bp | TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGGAGAAGGCAGAATTTTaGCCAAGTATGGCCTGCAGA | + |
Preference number: 2 (lower is better) Translates to: FLLHYLYVCRGPDNLWELEKAEF*PSMACR Trigger: TCTGCAGGCCATACTTGGTCAAAATTCTGCCTTCTC...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR GCA 90 bp | GCCAGCCAGGACTATAGAGAAACCTCAAACTATTTCACAAATAGTATTATTTACTGTTCTCTCCGAGGATaGAGGTTGGGTTTCCAGCAC | + |
Preference number: 2 (lower is better) Translates to: ASQDYRETSNYFTNSIIYCSLRG*RLGFQH Trigger: GTGCTGGAAACCCAACCTGCATCCTCGGAGAGAACA...GTAAATAATACTATTTGTGAAATAGTTTGAGGTTTCTCTATAGTCCTGGCTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | CTCAAACACAGCTTCTACATCACTAAAACCTGCTTTGATGTGTACCTGAAGTCACCAGCACCTACATGGTaGTTCAAAGAACATCTGACA | + |
Preference number: 2 (lower is better) Translates to: LKHSFYITKTCFDVYLKSPAPTW*FKEHLT Trigger: TGTCAGATGTTCTTTGAACCACCATGTAGGTGCTGG...TGACTTCAGGTACACATCAAAGCAGGTTTTAGTGATGTAGAAGCTGTGTTTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGAGGATTGGCAACAAATaGCTTTTACCCACTGTGAGC | + |
Preference number: 2 (lower is better) Translates to: FLLHYLYVCRGPDNLWELRIGNK*LLPTVS Trigger: GCTCACAGTGGGTAAAAGCCATTTGTTGCCAATCCT...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR TCA 90 bp | CAGCCCTATTGTGTACACATCTACAATGCAACAAAAATTCAGACTTCTAGAAATCATGCCCATAGCATGTaGATCTTGGCTTCACTGGGA | + |
Preference number: 2 (lower is better) Translates to: QPYCVHIYNATKIQTSRNHAHSM*ILASLG Trigger: TCCCAGTGAAGCCAAGATTCACATGCTATGGGCATG...ATTTCTAGAAGTCTGAATTTTTGTTGCATTGTAGATGTGTACACAATAGGGCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR GCA 90 bp | CAGCCCTATTGTGTACACATCTACAATGCAACAAAAATTCAGACTTCTAGAAATCTGGGATTAAAGGTGTaGATCACACCCAGGCAAGTG | + |
Preference number: 2 (lower is better) Translates to: QPYCVHIYNATKIQTSRNLGLKV*ITPRQV Trigger: CACTTGCCTGGGTGTGATGCACACCTTTAATCCCAG...ATTTCTAGAAGTCTGAATTTTTGTTGCATTGTAGATGTGTACACAATAGGGCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR TCA 90 bp | TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGTATAGATTCTGGGATTaGACTCAGGCTGTTAGGATT | + |
Preference number: 2 (lower is better) Translates to: FLLHYLYVCRGPDNLWELYRFWD*TQAVRI Trigger: AATCCTAACAGCCTGAGTTCAATCCCAGAATCTATA...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR GCA 90 bp | CAAGTATGGCCTGCAGAGTCCATTTCAAATAACTCAGAATGGCTAATACAGTGGATCAAGGATGCAATCTaGTCTTTTCTAACCCAACTT | + |
Preference number: 2 (lower is better) Translates to: QVWPAESISNNSEWLIQWIKDAI*SFLTQL Trigger: AAGTTGGGTTAGAAAAGAGCAGATTGCATCCTTGAT...CCACTGTATTAGCCATTCTGAGTTATTTGAAATGGACTCTGCAGGCCATACTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTCAGCCTGTTCTGTGTTaGGACCCTATCCCAAAACAA | + |
Preference number: 2 (lower is better) Translates to: YATDMQPTVKITDYPHTSQPVLC*DPIPKQ Trigger: TTGTTTTGGGATAGGGTCCCAACACAGAACAGGCTG...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGTCAAATAACTCAGAATaGCTAATACAGTGGTCCCTG | + |
Preference number: 2 (lower is better) Translates to: FLLHYLYVCRGPDNLWELSNNSE*LIQWSL Trigger: CAGGGACCACTGTATTAGCCATTCTGAGTTATTTGA...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR TCA 90 bp | CAGCCCTATTGTGTACACATCTACAATGCAACAAAAATTCAGACTTCTAGAAATGCTTTGATGTGTACCTaGAGTCAACATAGCACACTC | + |
Preference number: 2 (lower is better) Translates to: QPYCVHIYNATKIQTSRNALMCT*SQHSTL Trigger: GAGTGTGCTATGTTGACTTCAGGTACACATCAAAGC...ATTTCTAGAAGTCTGAATTTTTGTTGCATTGTAGATGTGTACACAATAGGGCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGGAATCTTGGCTTCACTaGGACAAAAATAACCACATA | + |
Preference number: 2 (lower is better) Translates to: FLLHYLYVCRGPDNLWELESWLH*DKNNHI Trigger: TATGTGGTTATTTTTGTCCCAGTGAAGCCAAGATTC...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTTCAGTACTTGCTCAGTaGTTAAGGAACCTGTTCTCT | + |
Preference number: 2 (lower is better) Translates to: YATDMQPTVKITDYPHTSSVLAQ*LRNLFS Trigger: AGAGAACAGGTTCCTTAACCACTGAGCAAGTACTGA...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTCTCGTGGTTACTACCTaGTTAGTTATCCTTAGATTC | + |
Preference number: 2 (lower is better) Translates to: YATDMQPTVKITDYPHTSLVVTT*LVILRF Trigger: GAATCTAAGGATAACTAACCAGGTAGTAACCACGAG...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR GCA 90 bp | TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTAAGTTGCAGATATGTTaGAACATGAGTAACCCAAGT | + |
Preference number: 2 (lower is better) Translates to: YATDMQPTVKITDYPHTSKLQIC*NMSNPS Trigger: ACTTGGGTTACTCATGTTGCAACATATCTGCAACTT...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CCA 90 bp | TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTAAACACAAAAGGGCATaGTATACAGTGCAAATACAC | + |
Preference number: 2 (lower is better) Translates to: YATDMQPTVKITDYPHTSKHKRA*YTVQIH Trigger: GTGTATTTGCACTGTATACCATGCCCTTTTGTGTTT...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR GCA 90 bp | CAGCCCTATTGTGTACACATCTACAATGCAACAAAAATTCAGACTTCTAGAAATTTTCTAAAACAGCAGTaGTCTCAGAGGAAGTTAATT | + |
Preference number: 2 (lower is better) Translates to: QPYCVHIYNATKIQTSRNFLKQQ*SQRKLI Trigger: AATTAACTTCCTCTGAGAGCACTGCTGTTTTAGAAA...ATTTCTAGAAGTCTGAATTTTTGTTGCATTGTAGATGTGTACACAATAGGGCTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR CCA 72 bp | ATATGTTGCAACATGAGTAACCCAAGTAGTGTGACATaGGAGAGGCCACCCTGCCTTTCACAAATCACCTGG | + |
Preference number: 3 (lower is better) Translates to: ICCNMSNPSSVT*ERPPCLSQITW Trigger: CCAGGTGATTTGTGAAAGGCAGGGTGGCCTCTCCCATGTCACACTACTTGGGTTACTCATGTTGCAACATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR-3UTR CAA 90 bp | ACCAAAGTTCTATGGTACCTAAGCCTAGCCTCAACACTAGTTCAACTCAAACACCTCCGAGGATGCAGGTaGGGTTTCCAGCACCTACAT | + |
Preference number: 3 (lower is better) Translates to: TKVLWYLSLASTLVQLKHLRGCR*GFQHLH Trigger: ATGTAGGTGCTGGAAACCCAACCTGCATCCTCGGAG...GTGTTTGAGTTGAACTAGTGTTGAGGCTAGGCTTAGGTACCATAGAACTTTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR GCA 72 bp | GGCTCAAATCCCCTCAACCTAAAGTTGCAGATATGTTaGAACATGAGTAACCCAAGTAGTGTGACATGGGAG | + |
Preference number: 3 (lower is better) Translates to: GSNPLNLKLQIC*NMSNPSSVTWE Trigger: CTCCCATGTCACACTACTTGGGTTACTCATGTTGCAACATATCTGCAACTTTAGGTTGAGGGGATTTGAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR TCA 72 bp | GGTTTCCAGCACCTACATGGTGGTTCAAAGAACATCTaGCACCCCTGTGACACACACATTTACACTCATAAA | + |
Preference number: 3 (lower is better) Translates to: GFQHLHGGSKNI*HPCDTHIYTHK Trigger: TTTATGAGTGTAAATGTGTGTGTCACAGGGGTGTCAGATGTTCTTTGAACCACCATGTAGGTGCTGGAAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR TCA 72 bp | CTGTTAGGATTGGCAACAAATGGCTTTTACCCACTGTaGGCTACTTTCCCAGCCCTATTGTGTACACATCTA | + |
Preference number: 3 (lower is better) Translates to: LLGLATNGFYPL*ATFPALLCTHL Trigger: TAGATGTGTACACAATAGGGCTGGGAAAGTAGCTCACAGTGGGTAAAAGCCATTTGTTGCCAATCCTAACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR CCA 72 bp | GAGTCCATTTCAAATAACTCAGAATGGCTAATACAGTaGTCCCTGCCTTTAATTCCAGTACTCTGGGAGCAG | + |
Preference number: 3 (lower is better) Translates to: ESISNNSEWLIQ*SLPLIPVLWEQ Trigger: CTGCTCCCAGAGTACTGGAATTAAAGGCAGGGACCACTGTATTAGCCATTCTGAGTTATTTGAAATGGACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR GCA 72 bp | GAATTAAAGATTAGTTCAGTTGGCCAAAGTGGCACATaGAGGCTCAAATCCCCTCAACCTAAAGTTGCAGAT | + |
Preference number: 3 (lower is better) Translates to: ELKISSVGQSGT*RLKSPQPKVAD Trigger: ATCTGCAACTTTAGGTTGAGGGGATTTGAGCCTGCATGTGCCACTTTGGCCAACTGAACTAATCTTTAATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR CCA 72 bp | GTCCTCAGGAAATCCATGCCCATAGCATGTGAATCTTaGCTTCACTGGGACAAAAATAACCACATACACTTT | + |
Preference number: 3 (lower is better) Translates to: VLRKSMPIACES*LHWDKNNHIHF Trigger: AAAGTGTATGTGGTTATTTTTGTCCCAGTGAAGCCAAGATTCACATGCTATGGGCATGGATTTCCTGAGGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR TCA 72 bp | GCCTGTAACCCACTCATACAAGATTCACAGAATCAATaGCTCGTGGTTACTACCTGGTTAGTTATCCTTAGA | + |
Preference number: 3 (lower is better) Translates to: ACNPLIQDSQNQ*LVVTTWLVILR Trigger: TCTAAGGATAACTAACCAGGTAGTAACCACGAGTCATTGATTCTGTGAATCTTGTATGAGTGGGTTACAGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR GCA 72 bp | GAAGCAGTTTCTTCTGGAACCTCTATGGGACACTGTTaGCAGTTTAACTTTAAACACAAAAGGGCATGGTAT | + |
Preference number: 3 (lower is better) Translates to: EAVSSGTSMGHC*QFNFKHKRAWY Trigger: ATACCATGCCCTTTTGTGTTTAAAGTTAAACTGGCAACAGTGTCCCATAGAGGTTCCAGAAGAAACTGCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR TCA 72 bp | TCTATCATAACCATTCAGGAGATAGAGGCAGATTTCTaGTTTAGAAGCCAATCTGGTATAGAGCTCAAGCCA | + |
Preference number: 3 (lower is better) Translates to: SIITIQEIEADF*FRSQSGIELKP Trigger: TGGCTTGAGCTCTATACCAGATTGGCTTCTAAATCAGAAATCTGCCTCTATCTCCTGAATGGTTATGATAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR GCA 72 bp | AAGATGAAATTTTATCTAGAGTTTAGCATGCTGACATaGACCTGTATTCTCAGCGGAGGGATAAAGCATCTC | + |
Preference number: 3 (lower is better) Translates to: KMKFYLEFSMLT*TCILSGGIKHL Trigger: GAGATGCTTTATCCCTCCGCTGAGAATACAGGTGCATGTCAGCATGCTAAACTCTAGATAAAATTTCATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR TCA 72 bp | AGTTGTGATACTGGAGTAAGTTCTTACAGAATAATGTaGCTCAGTTTTAGCAACACAATTGAAGGGTGTATG | + |
Preference number: 3 (lower is better) Translates to: SCDTGVSSYRIM*LSFSNTIEGCM Trigger: CATACACCCTTCAATTGTGTTGCTAAAACTGAGTCACATTATTCTGTAAGAACTTACTCCAGTATCACAACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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3UTR CAA 72 bp | CTTGGTGCAAGGAATTTAAAGCTAGAGCTGGGTGTGTaGGGAGGCACAGGCAGGCAGATTTCTGAGTTCAAG | + |
Preference number: 4 (lower is better) Translates to: LGARNLKLELGV*GGTGRQISEFK Trigger: CTTGAACTCAGAAATCTGCCTGCCTGTGCCTCCCAACACACCCAGCTCTAGCTTTAAATTCCTTGCACCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |
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CDS-3UTR CCA 90 bp | TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTTTGTGGATCCTCATCTaGAATCGATCCCAGGTCTTG | + |
Preference number: 4 (lower is better) Translates to: YATDMQPTVKITDYPHTSLWILI*NRSQVL Trigger: CAAGACCTGGGATCGATTCCAGATGAGGATCCACAA...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138502.2 |