RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPS20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028234

Ensembl transcript IDs: ENSMUST00000138502.2

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGCCTGCAGAGTCCATTTCAAATAACTCAGAATGGCTAATACAGTaGTCCCTGCCTTTAATTCCAGTACTCTGGGAGCAGAGGCAATCA +
Preference number: 1 (lower is better)
Translates to: WPAESISNNSEWLIQ*SLPLIPVLWEQRQS
Trigger: TGATTGCCTCTGCTCCCAGAGTACTGGAATTAAAGGCAGGGACCACTGTATTAGCCATTCTGAGTTATTTGAAATGGACTCTGCAGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR TCA 90 bp GAACTCAGGCTGTTAGGATTGGCAACAAATGGCTTTTACCCACTGTaGGCTACTTTCCCAGCCCTATTGTGTACACATCTACAATGCAAC +
Preference number: 1 (lower is better)
Translates to: ELRLLGLATNGFYPL*ATFPALLCTHLQCN
Trigger: GTTGCATTGTAGATGTGTACACAATAGGGCTGGGAAAGTAGCTCACAGTGGGTAAAAGCCATTTGTTGCCAATCCTAACAGCCTGAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR CCA 90 bp AAGTTGCAGATATGTTGCAACATGAGTAACCCAAGTAGTGTGACATaGGAGAGGCCACCCTGCCTTTCACAAATCACCTGGAAAAGCAAA +
Preference number: 1 (lower is better)
Translates to: KLQICCNMSNPSSVT*ERPPCLSQITWKSK
Trigger: TTTGCTTTTCCAGGTGATTTGTGAAAGGCAGGGTGGCCTCTCCCATGTCACACTACTTGGGTTACTCATGTTGCAACATATCTGCAACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR CCA 90 bp TTTGACCAAGTATGGCCTGCAGAGTCCATTTCAAATAACTCAGAATaGCTAATACAGTGGTCCCTGCCTTTAATTCCAGTACTCTGGGAG +
Preference number: 1 (lower is better)
Translates to: FDQVWPAESISNNSE*LIQWSLPLIPVLWE
Trigger: CTCCCAGAGTACTGGAATTAAAGGCAGGGACCACTGTATTAGCCATTCTGAGTTATTTGAAATGGACTCTGCAGGCCATACTTGGTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR GCA 90 bp CTCCCCTTAGAAGCAGTTTCTTCTGGAACCTCTATGGGACACTGTTaGCAGTTTAACTTTAAACACAAAAGGGCATGGTATACAGTGCAA +
Preference number: 1 (lower is better)
Translates to: LPLEAVSSGTSMGHC*QFNFKHKRAWYTVQ
Trigger: TTGCACTGTATACCATGCCCTTTTGTGTTTAAAGTTAAACTGGCAACAGTGTCCCATAGAGGTTCCAGAAGAAACTGCTTCTAAGGGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR TCA 90 bp TTAATTTCTGCCTGTAACCCACTCATACAAGATTCACAGAATCAATaGCTCGTGGTTACTACCTGGTTAGTTATCCTTAGATTCAAGTCT +
Preference number: 1 (lower is better)
Translates to: LISACNPLIQDSQNQ*LVVTTWLVILRFKS
Trigger: AGACTTGAATCTAAGGATAACTAACCAGGTAGTAACCACGAGTCATTGATTCTGTGAATCTTGTATGAGTGGGTTACAGGCAGAAATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR TCA 90 bp TGGTGCAAGGAATTTAAAGCTAGAGCTGGGTGTGTTGGGAGGCACAGGCAGGCACAGCCTGGTCTACAGTaGGTTCCAGGACAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: WCKEFKARAGCVGRHRQAQPGLQ*VPGQPG
Trigger: CCCTGGCTGTCCTGGAACTCACTGTAGACCAGGCTG...TGCCTGCCTGTGCCTCCCAACACACCCAGCTCTAGCTTTAAATTCCTTGCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TGGTGCAAGGAATTTAAAGCTAGAGCTGGGTGTGTTGGGAGGCACAGGCAGGCATTCAGTTGGCCAAAGTaGCACATGCAGGCTCAAATC +
Preference number: 2 (lower is better)
Translates to: WCKEFKARAGCVGRHRQAFSWPK*HMQAQI
Trigger: GATTTGAGCCTGCATGTGCCACTTTGGCCAACTGAA...TGCCTGCCTGTGCCTCCCAACACACCCAGCTCTAGCTTTAAATTCCTTGCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR GCA 90 bp CAATGTCAGATGCAGAAACCTGAGACTGTAGTCAAGTGGCTTCAATGCCTTTGGTGGGAGAGGCCACCCTaGCTTTCACAAATCACCTGG +
Preference number: 2 (lower is better)
Translates to: QCQMQKPETVVKWLQCLWWERPP*LSQITW
Trigger: CCAGGTGATTTGTGAAAGGCAGGGTGGCCTCTCCCA...CCAAAGGCATTGAAGCCACTTGACTACAGTCTCAGGTTTCTGCATCTGACATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR GCA 90 bp CAATGTCAGATGCAGAAACCTGAGACTGTAGTCAAGTGGCTTCAATGCCTTTGGGGCCAAAGTGGCACATaGAGGCTCAAATCCCCTCAA +
Preference number: 2 (lower is better)
Translates to: QCQMQKPETVVKWLQCLWGQSGT*RLKSPQ
Trigger: TTGAGGGGATTTGAGCCTGCATGTGCCACTTTGGCC...CCAAAGGCATTGAAGCCACTTGACTACAGTCTCAGGTTTCTGCATCTGACATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGCCAAGTAGTGTGACATaGGAGAGGCCACCCTGCCTT +
Preference number: 2 (lower is better)
Translates to: FLLHYLYVCRGPDNLWELPSSVT*ERPPCL
Trigger: AAGGCAGGGTGGCCTCTCCCATGTCACACTACTTGG...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR TCA 90 bp ACCAAAGTTCTATGGTACCTAAGCCTAGCCTCAACACTAGTTCAACTCAAACACCATCTGACACCCCTGTaGCACACACATTTACACTCA +
Preference number: 2 (lower is better)
Translates to: TKVLWYLSLASTLVQLKHHLTPL*HTHLHS
Trigger: TGAGTGTAAATGTGTGTGTCACAGGGGTGTCAGATG...GTGTTTGAGTTGAACTAGTGTTGAGGCTAGGCTTAGGTACCATAGAACTTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR TCA 90 bp TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGGAGAAGGCAGAATTTTaGCCAAGTATGGCCTGCAGA +
Preference number: 2 (lower is better)
Translates to: FLLHYLYVCRGPDNLWELEKAEF*PSMACR
Trigger: TCTGCAGGCCATACTTGGTCAAAATTCTGCCTTCTC...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR GCA 90 bp GCCAGCCAGGACTATAGAGAAACCTCAAACTATTTCACAAATAGTATTATTTACTGTTCTCTCCGAGGATaGAGGTTGGGTTTCCAGCAC +
Preference number: 2 (lower is better)
Translates to: ASQDYRETSNYFTNSIIYCSLRG*RLGFQH
Trigger: GTGCTGGAAACCCAACCTGCATCCTCGGAGAGAACA...GTAAATAATACTATTTGTGAAATAGTTTGAGGTTTCTCTATAGTCCTGGCTGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp CTCAAACACAGCTTCTACATCACTAAAACCTGCTTTGATGTGTACCTGAAGTCACCAGCACCTACATGGTaGTTCAAAGAACATCTGACA +
Preference number: 2 (lower is better)
Translates to: LKHSFYITKTCFDVYLKSPAPTW*FKEHLT
Trigger: TGTCAGATGTTCTTTGAACCACCATGTAGGTGCTGG...TGACTTCAGGTACACATCAAAGCAGGTTTTAGTGATGTAGAAGCTGTGTTTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGAGGATTGGCAACAAATaGCTTTTACCCACTGTGAGC +
Preference number: 2 (lower is better)
Translates to: FLLHYLYVCRGPDNLWELRIGNK*LLPTVS
Trigger: GCTCACAGTGGGTAAAAGCCATTTGTTGCCAATCCT...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR TCA 90 bp CAGCCCTATTGTGTACACATCTACAATGCAACAAAAATTCAGACTTCTAGAAATCATGCCCATAGCATGTaGATCTTGGCTTCACTGGGA +
Preference number: 2 (lower is better)
Translates to: QPYCVHIYNATKIQTSRNHAHSM*ILASLG
Trigger: TCCCAGTGAAGCCAAGATTCACATGCTATGGGCATG...ATTTCTAGAAGTCTGAATTTTTGTTGCATTGTAGATGTGTACACAATAGGGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR GCA 90 bp CAGCCCTATTGTGTACACATCTACAATGCAACAAAAATTCAGACTTCTAGAAATCTGGGATTAAAGGTGTaGATCACACCCAGGCAAGTG +
Preference number: 2 (lower is better)
Translates to: QPYCVHIYNATKIQTSRNLGLKV*ITPRQV
Trigger: CACTTGCCTGGGTGTGATGCACACCTTTAATCCCAG...ATTTCTAGAAGTCTGAATTTTTGTTGCATTGTAGATGTGTACACAATAGGGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR TCA 90 bp TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGTATAGATTCTGGGATTaGACTCAGGCTGTTAGGATT +
Preference number: 2 (lower is better)
Translates to: FLLHYLYVCRGPDNLWELYRFWD*TQAVRI
Trigger: AATCCTAACAGCCTGAGTTCAATCCCAGAATCTATA...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR GCA 90 bp CAAGTATGGCCTGCAGAGTCCATTTCAAATAACTCAGAATGGCTAATACAGTGGATCAAGGATGCAATCTaGTCTTTTCTAACCCAACTT +
Preference number: 2 (lower is better)
Translates to: QVWPAESISNNSEWLIQWIKDAI*SFLTQL
Trigger: AAGTTGGGTTAGAAAAGAGCAGATTGCATCCTTGAT...CCACTGTATTAGCCATTCTGAGTTATTTGAAATGGACTCTGCAGGCCATACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTCAGCCTGTTCTGTGTTaGGACCCTATCCCAAAACAA +
Preference number: 2 (lower is better)
Translates to: YATDMQPTVKITDYPHTSQPVLC*DPIPKQ
Trigger: TTGTTTTGGGATAGGGTCCCAACACAGAACAGGCTG...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGTCAAATAACTCAGAATaGCTAATACAGTGGTCCCTG +
Preference number: 2 (lower is better)
Translates to: FLLHYLYVCRGPDNLWELSNNSE*LIQWSL
Trigger: CAGGGACCACTGTATTAGCCATTCTGAGTTATTTGA...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR TCA 90 bp CAGCCCTATTGTGTACACATCTACAATGCAACAAAAATTCAGACTTCTAGAAATGCTTTGATGTGTACCTaGAGTCAACATAGCACACTC +
Preference number: 2 (lower is better)
Translates to: QPYCVHIYNATKIQTSRNALMCT*SQHSTL
Trigger: GAGTGTGCTATGTTGACTTCAGGTACACATCAAAGC...ATTTCTAGAAGTCTGAATTTTTGTTGCATTGTAGATGTGTACACAATAGGGCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TTTTTATTGCACTATTTATATGTGTGCAGAGGGCCAGATAACTTGTGGGAGCTGGAATCTTGGCTTCACTaGGACAAAAATAACCACATA +
Preference number: 2 (lower is better)
Translates to: FLLHYLYVCRGPDNLWELESWLH*DKNNHI
Trigger: TATGTGGTTATTTTTGTCCCAGTGAAGCCAAGATTC...CAGCTCCCACAAGTTATCTGGCCCTCTGCACACATATAAATAGTGCAATAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTTCAGTACTTGCTCAGTaGTTAAGGAACCTGTTCTCT +
Preference number: 2 (lower is better)
Translates to: YATDMQPTVKITDYPHTSSVLAQ*LRNLFS
Trigger: AGAGAACAGGTTCCTTAACCACTGAGCAAGTACTGA...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTCTCGTGGTTACTACCTaGTTAGTTATCCTTAGATTC +
Preference number: 2 (lower is better)
Translates to: YATDMQPTVKITDYPHTSLVVTT*LVILRF
Trigger: GAATCTAAGGATAACTAACCAGGTAGTAACCACGAG...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR GCA 90 bp TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTAAGTTGCAGATATGTTaGAACATGAGTAACCCAAGT +
Preference number: 2 (lower is better)
Translates to: YATDMQPTVKITDYPHTSKLQIC*NMSNPS
Trigger: ACTTGGGTTACTCATGTTGCAACATATCTGCAACTT...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CCA 90 bp TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTAAACACAAAAGGGCATaGTATACAGTGCAAATACAC +
Preference number: 2 (lower is better)
Translates to: YATDMQPTVKITDYPHTSKHKRA*YTVQIH
Trigger: GTGTATTTGCACTGTATACCATGCCCTTTTGTGTTT...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR GCA 90 bp CAGCCCTATTGTGTACACATCTACAATGCAACAAAAATTCAGACTTCTAGAAATTTTCTAAAACAGCAGTaGTCTCAGAGGAAGTTAATT +
Preference number: 2 (lower is better)
Translates to: QPYCVHIYNATKIQTSRNFLKQQ*SQRKLI
Trigger: AATTAACTTCCTCTGAGAGCACTGCTGTTTTAGAAA...ATTTCTAGAAGTCTGAATTTTTGTTGCATTGTAGATGTGTACACAATAGGGCTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR CCA 72 bp ATATGTTGCAACATGAGTAACCCAAGTAGTGTGACATaGGAGAGGCCACCCTGCCTTTCACAAATCACCTGG +
Preference number: 3 (lower is better)
Translates to: ICCNMSNPSSVT*ERPPCLSQITW
Trigger: CCAGGTGATTTGTGAAAGGCAGGGTGGCCTCTCCCATGTCACACTACTTGGGTTACTCATGTTGCAACATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR-3UTR CAA 90 bp ACCAAAGTTCTATGGTACCTAAGCCTAGCCTCAACACTAGTTCAACTCAAACACCTCCGAGGATGCAGGTaGGGTTTCCAGCACCTACAT +
Preference number: 3 (lower is better)
Translates to: TKVLWYLSLASTLVQLKHLRGCR*GFQHLH
Trigger: ATGTAGGTGCTGGAAACCCAACCTGCATCCTCGGAG...GTGTTTGAGTTGAACTAGTGTTGAGGCTAGGCTTAGGTACCATAGAACTTTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR GCA 72 bp GGCTCAAATCCCCTCAACCTAAAGTTGCAGATATGTTaGAACATGAGTAACCCAAGTAGTGTGACATGGGAG +
Preference number: 3 (lower is better)
Translates to: GSNPLNLKLQIC*NMSNPSSVTWE
Trigger: CTCCCATGTCACACTACTTGGGTTACTCATGTTGCAACATATCTGCAACTTTAGGTTGAGGGGATTTGAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR TCA 72 bp GGTTTCCAGCACCTACATGGTGGTTCAAAGAACATCTaGCACCCCTGTGACACACACATTTACACTCATAAA +
Preference number: 3 (lower is better)
Translates to: GFQHLHGGSKNI*HPCDTHIYTHK
Trigger: TTTATGAGTGTAAATGTGTGTGTCACAGGGGTGTCAGATGTTCTTTGAACCACCATGTAGGTGCTGGAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR TCA 72 bp CTGTTAGGATTGGCAACAAATGGCTTTTACCCACTGTaGGCTACTTTCCCAGCCCTATTGTGTACACATCTA +
Preference number: 3 (lower is better)
Translates to: LLGLATNGFYPL*ATFPALLCTHL
Trigger: TAGATGTGTACACAATAGGGCTGGGAAAGTAGCTCACAGTGGGTAAAAGCCATTTGTTGCCAATCCTAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR CCA 72 bp GAGTCCATTTCAAATAACTCAGAATGGCTAATACAGTaGTCCCTGCCTTTAATTCCAGTACTCTGGGAGCAG +
Preference number: 3 (lower is better)
Translates to: ESISNNSEWLIQ*SLPLIPVLWEQ
Trigger: CTGCTCCCAGAGTACTGGAATTAAAGGCAGGGACCACTGTATTAGCCATTCTGAGTTATTTGAAATGGACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR GCA 72 bp GAATTAAAGATTAGTTCAGTTGGCCAAAGTGGCACATaGAGGCTCAAATCCCCTCAACCTAAAGTTGCAGAT +
Preference number: 3 (lower is better)
Translates to: ELKISSVGQSGT*RLKSPQPKVAD
Trigger: ATCTGCAACTTTAGGTTGAGGGGATTTGAGCCTGCATGTGCCACTTTGGCCAACTGAACTAATCTTTAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR CCA 72 bp GTCCTCAGGAAATCCATGCCCATAGCATGTGAATCTTaGCTTCACTGGGACAAAAATAACCACATACACTTT +
Preference number: 3 (lower is better)
Translates to: VLRKSMPIACES*LHWDKNNHIHF
Trigger: AAAGTGTATGTGGTTATTTTTGTCCCAGTGAAGCCAAGATTCACATGCTATGGGCATGGATTTCCTGAGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR TCA 72 bp GCCTGTAACCCACTCATACAAGATTCACAGAATCAATaGCTCGTGGTTACTACCTGGTTAGTTATCCTTAGA +
Preference number: 3 (lower is better)
Translates to: ACNPLIQDSQNQ*LVVTTWLVILR
Trigger: TCTAAGGATAACTAACCAGGTAGTAACCACGAGTCATTGATTCTGTGAATCTTGTATGAGTGGGTTACAGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR GCA 72 bp GAAGCAGTTTCTTCTGGAACCTCTATGGGACACTGTTaGCAGTTTAACTTTAAACACAAAAGGGCATGGTAT +
Preference number: 3 (lower is better)
Translates to: EAVSSGTSMGHC*QFNFKHKRAWY
Trigger: ATACCATGCCCTTTTGTGTTTAAAGTTAAACTGGCAACAGTGTCCCATAGAGGTTCCAGAAGAAACTGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR TCA 72 bp TCTATCATAACCATTCAGGAGATAGAGGCAGATTTCTaGTTTAGAAGCCAATCTGGTATAGAGCTCAAGCCA +
Preference number: 3 (lower is better)
Translates to: SIITIQEIEADF*FRSQSGIELKP
Trigger: TGGCTTGAGCTCTATACCAGATTGGCTTCTAAATCAGAAATCTGCCTCTATCTCCTGAATGGTTATGATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR GCA 72 bp AAGATGAAATTTTATCTAGAGTTTAGCATGCTGACATaGACCTGTATTCTCAGCGGAGGGATAAAGCATCTC +
Preference number: 3 (lower is better)
Translates to: KMKFYLEFSMLT*TCILSGGIKHL
Trigger: GAGATGCTTTATCCCTCCGCTGAGAATACAGGTGCATGTCAGCATGCTAAACTCTAGATAAAATTTCATCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR TCA 72 bp AGTTGTGATACTGGAGTAAGTTCTTACAGAATAATGTaGCTCAGTTTTAGCAACACAATTGAAGGGTGTATG +
Preference number: 3 (lower is better)
Translates to: SCDTGVSSYRIM*LSFSNTIEGCM
Trigger: CATACACCCTTCAATTGTGTTGCTAAAACTGAGTCACATTATTCTGTAAGAACTTACTCCAGTATCACAACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
3UTR CAA 72 bp CTTGGTGCAAGGAATTTAAAGCTAGAGCTGGGTGTGTaGGGAGGCACAGGCAGGCAGATTTCTGAGTTCAAG +
Preference number: 4 (lower is better)
Translates to: LGARNLKLELGV*GGTGRQISEFK
Trigger: CTTGAACTCAGAAATCTGCCTGCCTGTGCCTCCCAACACACCCAGCTCTAGCTTTAAATTCCTTGCACCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2
CDS-3UTR CCA 90 bp TATGCTACAGATATGCAACCAACAGTAAAAATAACAGACTATCCACATACCAGTTTGTGGATCCTCATCTaGAATCGATCCCAGGTCTTG +
Preference number: 4 (lower is better)
Translates to: YATDMQPTVKITDYPHTSLWILI*NRSQVL
Trigger: CAAGACCTGGGATCGATTCCAGATGAGGATCCACAA...ACTGGTATGTGGATAGTCTGTTATTTTTACTGTTGGTTGCATATCTGTAGCATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138502.2