Pregenerated sensors for RPS19BP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051518Ensembl transcript IDs: ENSMUST00000052499.9, ENSMUST00000230189.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACTAGCCGATCACAGGCTTTTCGGCCTTGGTTCTGCTGCAGGATCTaGTGGGTCACAGACTCTGGCACGGTGCTTCTCATGCTGGTCATA | + |
|
Preference number: 1 (lower is better) Translates to: TSRSQAFRPWFCCRI*WVTDSGTVLLMLVI Trigger: TATGACCAGCATGAGAAGCACCGTGCCAGAGTCTGTGACCCAGCAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTGTGATCGGCTAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CCA 90 bp | AGCCGATCACAGGCTTTTCGGCCTTGGTTCTGCTGCAGGATCTGCTaGGTCACAGACTCTGGCACGGTGCTTCTCATGCTGGTCATAAAC | + |
|
Preference number: 1 (lower is better) Translates to: SRSQAFRPWFCCRIC*VTDSGTVLLMLVIN Trigger: GTTTATGACCAGCATGAGAAGCACCGTGCCAGAGTCTGTGACCCAGCAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTGTGATCGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR GCA 90 bp | CGGAAAGACACAGAACTTCTGATTCTCCTGCCTCCACCTCTCAAGTaGAGGGATGACAGATGTGTGTCACCACTCCCAGGCTTTTCCCTC | + |
|
Preference number: 1 (lower is better) Translates to: RKDTELLILLPPPLK*RDDRCVSPLPGFSL Trigger: GAGGGAAAAGCCTGGGAGTGGTGACACACATCTGTCATCCCTGCACTTGAGAGGTGGAGGCAGGAGAATCAGAAGTTCTGTGTCTTTCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CCA 90 bp | TGGGCCCAGTACCAAATAGCCCTGATAACCAATCCTGGTCATAGCTaGCAGGTCAGAATCTTTTCTGGCAGGGTGCTGATGGTTCCGCCA | + |
|
Preference number: 1 (lower is better) Translates to: WAQYQIALITNPGHS*QVRIFSGRVLMVPP Trigger: TGGCGGAACCATCAGCACCCTGCCAGAAAAGATTCTGACCTGCCAGCTATGACCAGGATTGGTTATCAGGGCTATTTGGTACTGGGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR TCA 90 bp | GACACTGCCGTTTCTGGTACTCAGCACGGAAAGACACAGAACTTCTaGTTCTCCTGCCTCCACCTCTCAAGTGCAGGGATGACAGATGTG | + |
|
Preference number: 1 (lower is better) Translates to: DTAVSGTQHGKTQNF*FSCLHLSSAGMTDV Trigger: CACATCTGTCATCCCTGCACTTGAGAGGTGGAGGCAGGAGAATCAGAAGTTCTGTGTCTTTCCGTGCTGAGTACCAGAAACGGCAGTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR GCA 90 bp | AGACTCTGGCACGGTGCTTCTCATGCTGGTCATAAACTTCAGGTTTaGTTTGAGGTGGTCTCGACACTGCCGTTTCTGGTACTCAGCACG | + |
|
Preference number: 1 (lower is better) Translates to: RLWHGASHAGHKLQV*FEVVSTLPFLVLST Trigger: CGTGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCATGAGAAGCACCGTGCCAGAGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CCA 90 bp | CAGTGCCCTCAGCCTTCTTCTTCTTCTTCTTCTTGTTCTTCGTCTTaGCCACTAGCCGATCACAGGCTTTTCGGCCTTGGTTCTGCTGCA | + |
|
Preference number: 1 (lower is better) Translates to: QCPQPSSSSSSCSSS*PLADHRLFGLGSAA Trigger: TGCAGCAGAACCAAGGCCGAAAAGCCTGTGATCGGCTAGTGGCCAAGACGAAGAACAAGAAGAAGAAGAAGAAGAAGGCTGAGGGCACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CCA 90 bp | ACGGTGCTTCTCATGCTGGTCATAAACTTCAGGTTTGCTTTGAGGTaGTCTCGACACTGCCGTTTCTGGTACTCAGCACGGAAAGACACA | + |
|
Preference number: 1 (lower is better) Translates to: TVLLMLVINFRFALR*SRHCRFWYSARKDT Trigger: TGTGTCTTTCCGTGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCATGAGAAGCACCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR GCA 90 bp | ATGCTGGTCATAAACTTCAGGTTTGCTTTGAGGTGGTCTCGACACTaGCGTTTCTGGTACTCAGCACGGAAAGACACAGAACTTCTGATT | + |
|
Preference number: 1 (lower is better) Translates to: MLVINFRFALRWSRH*RFWYSARKDTELLI Trigger: AATCAGAAGTTCTGTGTCTTTCCGTGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CCA 90 bp | ACATTTATTTATTTGAATTTCCAGCTCCTTGAGGTGGGGTCTGAGTaGGCCCAGTACCAAATAGCCCTGATAACCAATCCTGGTCATAGC | + |
|
Preference number: 1 (lower is better) Translates to: TFIYLNFQLLEVGSE*AQYQIALITNPGHS Trigger: GCTATGACCAGGATTGGTTATCAGGGCTATTTGGTACTGGGCCCACTCAGACCCCACCTCAAGGAGCTGGAAATTCAAATAAATAAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR-3UTR TCA 90 bp | CAGGCTTTTCGGCCTTGGTTCTGCTGCAGGATCTGCTGGGTCACAGACTCTGGCACTTCAGGTTTGCTTTaGGGTGGTCTCGACACTGCC | + |
|
Preference number: 2 (lower is better) Translates to: QAFRPWFCCRICWVTDSGTSGLL*GGLDTA Trigger: GGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGT...GCCAGAGTCTGTGACCCAGCAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR-3UTR GCA 90 bp | TTCAGTTTGAGGGAAAATTTGCTGCAGGGCTTGCAGCTCTGTTCCAGTGTCCCTTTTTGCACTGCCACCTaGTGGTCGCTCGTGGCACAG | + |
|
Preference number: 2 (lower is better) Translates to: FSLRENLLQGLQLCSSVPFCTAT*WSLVAQ Trigger: CTGTGCCACGAGCGACCAGCAGGTGGCAGTGCAAAA...AGGGACACTGGAACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR CAA 90 bp | TGGCAGGGTGCTGATGGTTCCGCCAAACTAGAAGTCCACTTCAGTTaGAGGGAAAATTTGCTGCAGGGCTTGCAGCTCTGTTCCAGTGTC | + |
|
Preference number: 2 (lower is better) Translates to: WQGADGSAKLEVHFS*RENLLQGLQLCSSV Trigger: GACACTGGAACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAGTTTGGCGGAACCATCAGCACCCTGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR CAA 90 bp | ACAGTGCCCTCAGCCTTCTTCTTCTTCTTCTTCTTGTTCTTCGTCTaGGCCACTAGCCGATCACAGGCTTTTCGGCCTTGGTTCTGCTGC | + |
|
Preference number: 2 (lower is better) Translates to: TVPSAFFFFFFLFFV*ATSRSQAFRPWFCC Trigger: GCAGCAGAACCAAGGCCGAAAAGCCTGTGATCGGCTAGTGGCCAAGACGAAGAACAAGAAGAAGAAGAAGAAGAAGGCTGAGGGCACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR-3UTR CCA 90 bp | TATTCCCTCTGGAACTTCTGGAAGTCTTCTTCAGTGAACACAGTGCCCTCAGCCCTGGGTCACAGACTCTaGCACGGTGCTTCTCATGCT | + |
|
Preference number: 2 (lower is better) Translates to: YSLWNFWKSSSVNTVPSALGHRL*HGASHA Trigger: AGCATGAGAAGCACCGTGCCAGAGTCTGTGACCCAG...GGCTGAGGGCACTGTGTTCACTGAAGAAGACTTCCAGAAGTTCCAGAGGGAATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CAA 90 bp | GATGGTTCCGCCAAACTAGAAGTCCACTTCAGTTTGAGGGAAAATTaGCTGCAGGGCTTGCAGCTCTGTTCCAGTGTCCCTGGGATAGCA | + |
|
Preference number: 2 (lower is better) Translates to: DGSAKLEVHFSLREN*LQGLQLCSSVPGIA Trigger: TGCTATCCCAGGGACACTGGAACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAGTTTGGCGGAACCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR CAA 90 bp | TCTGGCACGGTGCTTCTCATGCTGGTCATAAACTTCAGGTTTGCTTaGAGGTGGTCTCGACACTGCCGTTTCTGGTACTCAGCACGGAAA | + |
|
Preference number: 2 (lower is better) Translates to: SGTVLLMLVINFRFA*RWSRHCRFWYSARK Trigger: TTTCCGTGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCATGAGAAGCACCGTGCCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR-3UTR TCA 90 bp | CTGGTCATAAACTTCAGGTTTGCTTTGAGGTGGTCTCGACACTGCCGTTTCTGGAAGACACAGAACTTCTaGTTCTCCTGCCTCCACCTC | + |
|
Preference number: 2 (lower is better) Translates to: LVINFRFALRWSRHCRFWKTQNF*FSCLHL Trigger: GAGGTGGAGGCAGGAGAATCAGAAGTTCTGTGTCTT...CCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CAA 90 bp | AAACTAGAAGTCCACTTCAGTTTGAGGGAAAATTTGCTGCAGGGCTaGCAGCTCTGTTCCAGTGTCCCTGGGATAGCAGCATATGGCTTC | + |
|
Preference number: 2 (lower is better) Translates to: KLEVHFSLRENLLQG*QLCSSVPGIAAYGF Trigger: GAAGCCATATGCTGCTATCCCAGGGACACTGGAACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR-3UTR GCA 90 bp | ATAAACTTCAGGTTTGCTTTGAGGTGGTCTCGACACTGCCGTTTCTGGTACTCACCTCCACCTCTCAAGTaGAGGGATGACAGATGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: INFRFALRWSRHCRFWYSPPPLK*RDDRCV Trigger: CACACATCTGTCATCCCTGCACTTGAGAGGTGGAGG...TGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR-3UTR CCA 90 bp | TGGTTCCGCCAAACTAGAAGTCCACTTCAGTTTGAGGGAAAATTTGCTGCAGGGCTGTTCCAGTGTCCCTaGGATAGCAGCATATGGCTT | + |
|
Preference number: 2 (lower is better) Translates to: WFRQTRSPLQFEGKFAAGLFQCP*DSSIWL Trigger: AAGCCATATGCTGCTATCCCAGGGACACTGGAACAG...CCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAGTTTGGCGGAACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR GCA 72 bp | GCCACTAGCCGATCACAGGCTTTTCGGCCTTGGTTCTaGTGCAGGATCTGCTGGGTCACAGACTCTGGCACG | + |
|
Preference number: 3 (lower is better) Translates to: ATSRSQAFRPWF*CRICWVTDSGT Trigger: CGTGCCAGAGTCTGTGACCCAGCAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTGTGATCGGCTAGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR GCA 72 bp | ACTAGCCGATCACAGGCTTTTCGGCCTTGGTTCTGCTaGAGGATCTGCTGGGTCACAGACTCTGGCACGGTG | + |
|
Preference number: 3 (lower is better) Translates to: TSRSQAFRPWFC*RICWVTDSGTV Trigger: CACCGTGCCAGAGTCTGTGACCCAGCAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTGTGATCGGCTAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CCA 72 bp | CAGGCTTTTCGGCCTTGGTTCTGCTGCAGGATCTGCTaGGTCACAGACTCTGGCACGGTGCTTCTCATGCTG | + |
|
Preference number: 3 (lower is better) Translates to: QAFRPWFCCRIC*VTDSGTVLLML Trigger: CAGCATGAGAAGCACCGTGCCAGAGTCTGTGACCCAGCAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR GCA 72 bp | TCACAGGCTTTTCGGCCTTGGTTCTGCTGCAGGATCTaGTGGGTCACAGACTCTGGCACGGTGCTTCTCATG | + |
|
Preference number: 3 (lower is better) Translates to: SQAFRPWFCCRI*WVTDSGTVLLM Trigger: CATGAGAAGCACCGTGCCAGAGTCTGTGACCCAGCAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR TCA 72 bp | TCTGATTCTCCTGCCTCCACCTCTCAAGTGCAGGGATaGCAGATGTGTGTCACCACTCCCAGGCTTTTCCCT | + |
|
Preference number: 3 (lower is better) Translates to: SDSPASTSQVQG*QMCVTTPRLFP Trigger: AGGGAAAAGCCTGGGAGTGGTGACACACATCTGTCATCCCTGCACTTGAGAGGTGGAGGCAGGAGAATCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR GCA 72 bp | ACAGAACTTCTGATTCTCCTGCCTCCACCTCTCAAGTaGAGGGATGACAGATGTGTGTCACCACTCCCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: TELLILLPPPLK*RDDRCVSPLPG Trigger: GCCTGGGAGTGGTGACACACATCTGTCATCCCTGCACTTGAGAGGTGGAGGCAGGAGAATCAGAAGTTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR-3UTR CAA 90 bp | GGTCATAGCTGGCAGGTCAGAATCTTTTCTGGCAGGGTGCTGATGGTTCCGCCAGAAGTCCACTTCAGTTaGAGGGAAAATTTGCTGCAG | + |
|
Preference number: 3 (lower is better) Translates to: GHSWQVRIFSGRVLMVPPEVHFS*RENLLQ Trigger: CTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTC...TGGCGGAACCATCAGCACCCTGCCAGAAAAGATTCTGACCTGCCAGCTATGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR TCA 72 bp | GTTTCTGGTACTCAGCACGGAAAGACACAGAACTTCTaGTTCTCCTGCCTCCACCTCTCAAGTGCAGGGATG | + |
|
Preference number: 3 (lower is better) Translates to: VSGTQHGKTQNF*FSCLHLSSAGM Trigger: CATCCCTGCACTTGAGAGGTGGAGGCAGGAGAATCAGAAGTTCTGTGTCTTTCCGTGCTGAGTACCAGAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CCA 72 bp | CTCATGCTGGTCATAAACTTCAGGTTTGCTTTGAGGTaGTCTCGACACTGCCGTTTCTGGTACTCAGCACGG | + |
|
Preference number: 3 (lower is better) Translates to: LMLVINFRFALR*SRHCRFWYSAR Trigger: CCGTGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR-3UTR CAA 90 bp | TTCTTCTTCTTCTTGTTCTTCGTCTTGGCCACTAGCCGATCACAGGCTTTTCGGAACTTCAGGTTTGCTTaGAGGTGGTCTCGACACTGC | + |
|
Preference number: 3 (lower is better) Translates to: FFFFLFFVLATSRSQAFRNFRFA*RWSRHC Trigger: GCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTT...CCGAAAAGCCTGTGATCGGCTAGTGGCCAAGACGAAGAACAAGAAGAAGAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR TCA 72 bp | ATAGCTGGCAGGTCAGAATCTTTTCTGGCAGGGTGCTaGTGGTTCCGCCAAACTAGAAGTCCACTTCAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: IAGRSESFLAGC*WFRQTRSPLQF Trigger: AAACTGAAGTGGACTTCTAGTTTGGCGGAACCATCAGCACCCTGCCAGAAAAGATTCTGACCTGCCAGCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR CCA 72 bp | TACCAAATAGCCCTGATAACCAATCCTGGTCATAGCTaGCAGGTCAGAATCTTTTCTGGCAGGGTGCTGATG | + |
|
Preference number: 3 (lower is better) Translates to: YQIALITNPGHS*QVRIFSGRVLM Trigger: CATCAGCACCCTGCCAGAAAAGATTCTGACCTGCCAGCTATGACCAGGATTGGTTATCAGGGCTATTTGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR GCA 72 bp | ATAAACTTCAGGTTTGCTTTGAGGTGGTCTCGACACTaGCGTTTCTGGTACTCAGCACGGAAAGACACAGAA | + |
|
Preference number: 3 (lower is better) Translates to: INFRFALRWSRH*RFWYSARKDTE Trigger: TTCTGTGTCTTTCCGTGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| CDS-3UTR CCA 90 bp | CCCAGGACAGCAGAAGTCCAGCCAAGGAGGGTTAGTGTCTTTTGTCCCCACCATGGAGTCCCGCTAGCCTaGACCTGGCCCGGGACCGCA | + |
|
Preference number: 4 (lower is better) Translates to: PRTAEVQPRRVSVFCPHHGVPLA*TWPGTA Trigger: TGCGGTCCCGGGCCAGGTCCAGGCTAGCGGGACTCC...ATGGTGGGGACAAAAGACACTAACCCTCCTTGGCTGGACTTCTGCTGTCCTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR CCA 90 bp | CTTCTGATTCTCCTGCCTCCACCTCTCAAGTGCAGGGATGACAGATGTGTGTCAGGAGTCCCGCTAGCCTaGACCTGGCCCGGGACCGCA | + |
|
Preference number: 4 (lower is better) Translates to: LLILLPPPLKCRDDRCVSGVPLA*TWPGTA Trigger: TGCGGTCCCGGGCCAGGTCCAGGCTAGCGGGACTCC...TGACACACATCTGTCATCCCTGCACTTGAGAGGTGGAGGCAGGAGAATCAGAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| CDS-3UTR GCA 90 bp | CCCAGGACAGCAGAAGTCCAGCCAAGGAGGGTTAGTGTCTTTTGTCCCCACCATAGGTGGTCTCGACACTaGCGTTTCTGGTACTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: PRTAEVQPRRVSVFCPHHRWSRH*RFWYSA Trigger: AGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCT...ATGGTGGGGACAAAAGACACTAACCCTCCTTGGCTGGACTTCTGCTGTCCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR GCA 90 bp | TTCTGGCAGGGTGCTGATGGTTCCGCCAAACTAGAAGTCCACTTCAGTTTGAGGCGGCCTTGGTTCTGCTaGAGGATCTGCTGGGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: FWQGADGSAKLEVHFSLRRPWFC*RICWVT Trigger: TGTGACCCAGCAGATCCTGCAGCAGAACCAAGGCCG...CCTCAAACTGAAGTGGACTTCTAGTTTGGCGGAACCATCAGCACCCTGCCAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR TCA 90 bp | GAAGTCCAGCCAAGGAGGGTTAGTGTCTTTTGTCCCCACCATTCCTCCAGGAAGACTTCAGGTTTGCTTTaGGGTGGTCTCGACACTGCC | + |
|
Preference number: 4 (lower is better) Translates to: EVQPRRVSVFCPHHSSRKTSGLL*GGLDTA Trigger: GGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGT...CTTCCTGGAGGAATGGTGGGGACAAAAGACACTAACCCTCCTTGGCTGGACTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR CCA 90 bp | AGTCCACTTCAGTTTGAGGGAAAATTTGCTGCAGGGCTTGCAGCTCTGTTCCAGTGCTGCAGGATCTGCTaGGTCACAGACTCTGGCACG | + |
|
Preference number: 4 (lower is better) Translates to: SPLQFEGKFAAGLAALFQCCRIC*VTDSGT Trigger: CGTGCCAGAGTCTGTGACCCAGCAGATCCTGCAGCA...CTGGAACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR CCA 90 bp | TTCAGTTTGAGGGAAAATTTGCTGCAGGGCTTGCAGCTCTGTTCCAGTGTCCCTCAGGCTTTTCGGCCTTaGTTCTGCTGCAGGATCTGC | + |
|
Preference number: 4 (lower is better) Translates to: FSLRENLLQGLQLCSSVPQAFRP*FCCRIC Trigger: GCAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTG...AGGGACACTGGAACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR CCA 90 bp | CTAGAAGTCCACTTCAGTTTGAGGGAAAATTTGCTGCAGGGCTTGCAGCTCTGTCTGGGTCACAGACTCTaGCACGGTGCTTCTCATGCT | + |
|
Preference number: 4 (lower is better) Translates to: LEVHFSLRENLLQGLQLCLGHRL*HGASHA Trigger: AGCATGAGAAGCACCGTGCCAGAGTCTGTGACCCAG...ACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR TCA 90 bp | TGGTTCCGCCAAACTAGAAGTCCACTTCAGTTTGAGGGAAAATTTGCTGCAGGGGGAAGTCTTCTTCAGTaGACACAGTGCCCTCAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: WFRQTRSPLQFEGKFAAGGSLLQ*TQCPQP Trigger: AGGCTGAGGGCACTGTGTTCACTGAAGAAGACTTCC...CCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAGTTTGGCGGAACCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR CCA 90 bp | AGTCCACTTCAGTTTGAGGGAAAATTTGCTGCAGGGCTTGCAGCTCTGTTCCAGAGGTTTGCTTTGAGGTaGTCTCGACACTGCCGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: SPLQFEGKFAAGLAALFQRFALR*SRHCRF Trigger: GAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCT...CTGGAACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR CAA 72 bp | GCCAAACTAGAAGTCCACTTCAGTTTGAGGGAAAATTaGCTGCAGGGCTTGCAGCTCTGTTCCAGTGTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: AKLEVHFSLREN*LQGLQLCSSVP Trigger: AGGGACACTGGAACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAGTTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR CAA 72 bp | GCTGATGGTTCCGCCAAACTAGAAGTCCACTTCAGTTaGAGGGAAAATTTGCTGCAGGGCTTGCAGCTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: ADGSAKLEVHFS*RENLLQGLQLC Trigger: ACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAGTTTGGCGGAACCATCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| 3UTR CAA 72 bp | AACACAGTGCCCTCAGCCTTCTTCTTCTTCTTCTTCTaGTTCTTCGTCTTGGCCACTAGCCGATCACAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: NTVPSAFFFFFF*FFVLATSRSQA Trigger: AGCCTGTGATCGGCTAGTGGCCAAGACGAAGAACAAGAAGAAGAAGAAGAAGAAGGCTGAGGGCACTGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| 3UTR CAA 72 bp | GTGCTTCTCATGCTGGTCATAAACTTCAGGTTTGCTTaGAGGTGGTCTCGACACTGCCGTTTCTGGTACTCA | + |
|
Preference number: 4 (lower is better) Translates to: VLLMLVINFRFA*RWSRHCRFWYS Trigger: TGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCATGAGAAGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230189.2 |
||
| CDS-3UTR CCA 90 bp | TGGTTCCGCCAAACTAGAAGTCCACTTCAGTTTGAGGGAAAATTTGCTGCAGGGTCCCTCTGGAACTTCTaGAAGTCTTCTTCAGTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: WFRQTRSPLQFEGKFAAGSLWNF*KSSSVN Trigger: GTTCACTGAAGAAGACTTCCAGAAGTTCCAGAGGGA...CCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAGTTTGGCGGAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR CCA 90 bp | CTAGAAGTCCACTTCAGTTTGAGGGAAAATTTGCTGCAGGGCTTGCAGCTCTGTCCAAAATATTCCCTCTaGAACTTCTGGAAGTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LEVHFSLRENLLQGLQLCPKYSL*NFWKSS Trigger: AGAAGACTTCCAGAAGTTCCAGAGGGAATATTTTGG...ACAGAGCTGCAAGCCCTGCAGCAAATTTTCCCTCAAACTGAAGTGGACTTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS CCA 90 bp | GACTTAGGCGCCTTTCCCTTCGCTGAGTTCCGCAGTTTCAGAGCCTaGGAGGCCTTGGCCCGCGCCCTCCGGGTCCGCTTCGCCGGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: DLGAFPFAEFRSFRA*EALARALRVRFAGV Trigger: GACTCCGGCGAAGCGGACCCGGAGGGCGCGGGCCAAGGCCTCCCAGGCTCTGAAACTGCGGAACTCAGCGAAGGGAAAGGCGCCTAAGTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052499.9 ENSMUST00000230189.2 |
||
| CDS-3UTR CAA 90 bp | GAAGTCCAGCCAAGGAGGGTTAGTGTCTTTTGTCCCCACCATTCCTCCAGGAAGACAGGCTTTTCGGCCTaGGTTCTGCTGCAGGATCTG | + |
|
Preference number: 5 (lower is better) Translates to: EVQPRRVSVFCPHHSSRKTGFSA*VLLQDL Trigger: CAGATCCTGCAGCAGAACCAAGGCCGAAAAGCCTGT...CTTCCTGGAGGAATGGTGGGGACAAAAGACACTAACCCTCCTTGGCTGGACTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS-3UTR CAA 90 bp | TGCAGGGACCCAGGACAGCAGAAGTCCAGCCAAGGAGGGTTAGTGTCTTTTGTCAACTTCAGGTTTGCTTaGAGGTGGTCTCGACACTGC | + |
|
Preference number: 5 (lower is better) Translates to: CRDPGQQKSSQGGLVSFVNFRFA*RWSRHC Trigger: GCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTT...GACAAAAGACACTAACCCTCCTTGGCTGGACTTCTGCTGTCCTGGGTCCCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS GCA 90 bp | ATGCTGGTCATAAACTTCAGGTTTGCTTTGAGGTGGTCTCGACACTaGCGTTTCTGGTACTCAGCTAGAGCGGACTTAGGCGCCTTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: MLVINFRFALRWSRH*RFWYSARADLGAFP Trigger: GGGAAAGGCGCCTAAGTCCGCTCTAGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS CCA 90 bp | ATAAACTTCAGGTTTGCTTTGAGGTGGTCTCGACACTGCCGTTTCTaGTACTCAGCTAGAGCGGACTTAGGCGCCTTTCCCTTCGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: INFRFALRWSRHCRF*YSARADLGAFPFAE Trigger: CTCAGCGAAGGGAAAGGCGCCTAAGTCCGCTCTAGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS CCA 90 bp | ACGGTGCTTCTCATGCTGGTCATAAACTTCAGGTTTGCTTTGAGGTaGTCTCGACACTGCCGTTTCTGGTACTCAGCTAGAGCGGACTTA | + |
|
Preference number: 5 (lower is better) Translates to: TVLLMLVINFRFALR*SRHCRFWYSARADL Trigger: TAAGTCCGCTCTAGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCATGAGAAGCACCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS TCA 90 bp | AGCTGCCAAAATATTCCCTCTGGAACTTCTGGAAGTCTTCTTCAGTaGACACAGTGCCCTCAGCCTTCTTCTTCTTCTTCTTCTTGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: SCQNIPSGTSGSLLQ*TQCPQPSSSSSSCS Trigger: AGAACAAGAAGAAGAAGAAGAAGAAGGCTGAGGGCACTGTGTTCACTGAAGAAGACTTCCAGAAGTTCCAGAGGGAATATTTTGGCAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS CCA 72 bp | GCCCTCCGGGTCCGCTTCGCCGGAGTCCCGCTAGCCTaGACCTGGCCCGGGACCGCACGGGGAGCCTCGGAC | + |
|
Preference number: 6 (lower is better) Translates to: ALRVRFAGVPLA*TWPGTARGASD Trigger: GTCCGAGGCTCCCCGTGCGGTCCCGGGCCAGGTCCAGGCTAGCGGGACTCCGGCGAAGCGGACCCGGAGGGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052499.9 ENSMUST00000230189.2 |
||
| CDS CCA 72 bp | TCGCTGAGTTCCGCAGTTTCAGAGCCTGGGAGGCCTTaGCCCGCGCCCTCCGGGTCCGCTTCGCCGGAGTCC | + |
|
Preference number: 6 (lower is better) Translates to: SLSSAVSEPGRP*PAPSGSASPES Trigger: GGACTCCGGCGAAGCGGACCCGGAGGGCGCGGGCCAAGGCCTCCCAGGCTCTGAAACTGCGGAACTCAGCGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052499.9 ENSMUST00000230189.2 |
||
| CDS CCA 72 bp | GCCTTTCCCTTCGCTGAGTTCCGCAGTTTCAGAGCCTaGGAGGCCTTGGCCCGCGCCCTCCGGGTCCGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: AFPFAEFRSFRA*EALARALRVRF Trigger: GAAGCGGACCCGGAGGGCGCGGGCCAAGGCCTCCCAGGCTCTGAAACTGCGGAACTCAGCGAAGGGAAAGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052499.9 ENSMUST00000230189.2 |
||
| CDS CAA 90 bp | TCTGGCACGGTGCTTCTCATGCTGGTCATAAACTTCAGGTTTGCTTaGAGGTGGTCTCGACACTGCCGTTTCTGGTACTCAGCTAGAGCG | + |
|
Preference number: 6 (lower is better) Translates to: SGTVLLMLVINFRFA*RWSRHCRFWYSARA Trigger: CGCTCTAGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCATGAGAAGCACCGTGCCAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||
| CDS CCA 72 bp | CTCATGCTGGTCATAAACTTCAGGTTTGCTTTGAGGTaGTCTCGACACTGCCGTTTCTGGTACTCAGCTAGA | + |
|
Preference number: 6 (lower is better) Translates to: LMLVINFRFALR*SRHCRFWYSAR Trigger: TCTAGCTGAGTACCAGAAACGGCAGTGTCGAGACCACCTCAAAGCAAACCTGAAGTTTATGACCAGCATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052499.9 |
||