Pregenerated sensors for RPS19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040952Ensembl transcript IDs: ENSMUST00000108428.8, ENSMUST00000124035.2, ENSMUST00000129847.8
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCTCACTGCATCCATGCCCTCAGCCCCACTGTTGCAGACACTTCTaGCTCTGTAAATTATACACAGGGCTCAAGCTTCTGCCCTTTGTC | + |
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Preference number: 1 (lower is better) Translates to: SSLHPCPQPHCCRHF*LCKLYTGLKLLPFV Trigger: GACAAAGGGCAGAAGCTTGAGCCCTGTGTATAATTTACAGAGTCAGAAGTGTCTGCAACAGTGGGGCTGAGGGCATGGATGCAGTGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR CCA 90 bp | ATCCCAAGCTGTGTAAACCTGGTGCCTGGTACTAAGGAGGAAGAGTaGCTAGAAGCCCTAACACCAAGTATCTGTACGGGACTACAGGTC | + |
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Preference number: 1 (lower is better) Translates to: IPSCVNLVPGTKEEE*LEALTPSICTGLQV Trigger: GACCTGTAGTCCCGTACAGATACTTGGTGTTAGGGCTTCTAGCCACTCTTCCTCCTTAGTACCAGGCACCAGGTTTACACAGCTTGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR-3UTR CCA 90 bp | GGGCTCAAGCTTCTGCCCTTTGTCCTGAGGGGATGGGTTTGCCAATGTTTGGGGAGCCTCATACCACATTaGGCACCCAGTCTCCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: GLKLLPFVLRGWVCQCLGSLIPH*APSLQQ Trigger: TTGCTGGAGACTGGGTGCCCAATGTGGTATGAGGCT...CCCCAAACATTGGCAAACCCATCCCCTCAGGACAAAGGGCAGAAGCTTGAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR-3UTR CCA 90 bp | ATAGCTCACTGCATCCATGCCCTCAGCCCCACTGTTGCAGACACTTCTGACTCTTTTGTCCTGAGGGGATaGGTTTGCCAATGTTTGGGG | + |
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Preference number: 2 (lower is better) Translates to: IAHCIHALSPTVADTSDSFVLRG*VCQCLG Trigger: CCCCAAACATTGGCAAACCCATCCCCTCAGGACAAA...AGAGTCAGAAGTGTCTGCAACAGTGGGGCTGAGGGCATGGATGCAGTGAGCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGCTGCCACCTGTGGGAAGACAGAAAGATCAGGGCGGGGTCAAGGTTTGTCAGAGCATCACTTTACATaGAATGTGGTAGGAAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: AAATCGKTERSGRGQGLSEHHFT*NVVGRK Trigger: CTTCCTTCCTACCACATTCCATGTAAAGTGATGCTC...TGACAAACCTTGACCCCGCCCTGATCTTTCTGTCTTCCCACAGGTGGCAGCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR GCA 72 bp | AAGATCAGGGCGGGGTCAAGGTTTGTCATAGCTCACTaGATCCATGCCCTCAGCCCCACTGTTGCAGACACT | + |
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Preference number: 3 (lower is better) Translates to: KIRAGSRFVIAH*IHALSPTVADT Trigger: AGTGTCTGCAACAGTGGGGCTGAGGGCATGGATGCAGTGAGCTATGACAAACCTTGACCCCGCCCTGATCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR-3UTR CAA 90 bp | GCAGCTGCCACCTGTGGGAAGACAGAAAGATCAGGGCGGGGTCAAGGTTTGTCATGGGTTTGCCAATGTTaGGGGTCAGGCTCTTTTTAC | + |
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Preference number: 3 (lower is better) Translates to: AAATCGKTERSGRGQGLSWVCQC*GSGSFY Trigger: GTAAAAAGAGCCTGACCCCAAACATTGGCAAACCCA...TGACAAACCTTGACCCCGCCCTGATCTTTCTGTCTTCCCACAGGTGGCAGCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR TCA 72 bp | AATTATACACAGGGCTCAAGCTTCTGCCCTTTGTCCTaGGGGGATGGGTTTGCCAATGTTTGGGGTCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: NYTQGSSFCPLS*GDGFANVWGQA Trigger: AGCCTGACCCCAAACATTGGCAAACCCATCCCCTCAGGACAAAGGGCAGAAGCTTGAGCCCTGTGTATAATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR TCA 72 bp | CATCCATGCCCTCAGCCCCACTGTTGCAGACACTTCTaGCTCTGTAAATTATACACAGGGCTCAAGCTTCTG | + |
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Preference number: 3 (lower is better) Translates to: HPCPQPHCCRHF*LCKLYTGLKLL Trigger: CAGAAGCTTGAGCCCTGTGTATAATTTACAGAGTCAGAAGTGTCTGCAACAGTGGGGCTGAGGGCATGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR CCA 72 bp | TGTGTAAACCTGGTGCCTGGTACTAAGGAGGAAGAGTaGCTAGAAGCCCTAACACCAAGTATCTGTACGGGA | + |
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Preference number: 3 (lower is better) Translates to: CVNLVPGTKEEE*LEALTPSICTG Trigger: TCCCGTACAGATACTTGGTGTTAGGGCTTCTAGCCACTCTTCCTCCTTAGTACCAGGCACCAGGTTTACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| 3UTR CCA 72 bp | TACACCACTGCTGTTCAGGGTGAGCATCACTTTACATaGAATGTGGTAGGAAGGAAGTCACTCTACAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: YTTAVQGEHHFT*NVVGRKSLYKV Trigger: GACTTTGTAGAGTGACTTCCTTCCTACCACATTCCATGTAAAGTGATGCTCACCCTGAACAGCAGTGGTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| CDS-3UTR TCA 90 bp | GCTTCTGCCCTTTGTCCTGAGGGGATGGGTTTGCCAATGTTTGGGGTCAGGCTCCTCTGCAGACCAGGCTaGCCTCCAGAAATCCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: ASALCPEGMGLPMFGVRLLCRPG*PPEIRL Trigger: CAGGCGGATTTCTGGAGGTCAGCCTGGTCTGCAGAG...GAGCCTGACCCCAAACATTGGCAAACCCATCCCCTCAGGACAAAGGGCAGAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| CDS-3UTR GCA 90 bp | GGGCTCAAGCTTCTGCCCTTTGTCCTGAGGGGATGGGTTTGCCAATGTTTGGGGCTGGGATTAAAGGCGTaGGCCACCACCGCCTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: GLKLLPFVLRGWVCQCLGLGLKA*ATTAWL Trigger: TAGCCAGGCGGTGGTGGCGCACGCCTTTAATCCCAG...CCCCAAACATTGGCAAACCCATCCCCTCAGGACAAAGGGCAGAAGCTTGAGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| CDS-3UTR GCA 90 bp | GGGCTCAAGCTTCTGCCCTTTGTCCTGAGGGGATGGGTTTGCCAATGTTTGGGGCTCCAGAAATCCGCCTaGCTCTGCCTCCTGCGTGCT | + |
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Preference number: 4 (lower is better) Translates to: GLKLLPFVLRGWVCQCLGLQKSA*LCLLRA Trigger: AGCACGCAGGAGGCAGAGGCAGGCGGATTTCTGGAG...CCCCAAACATTGGCAAACCCATCCCCTCAGGACAAAGGGCAGAAGCTTGAGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| CDS-3UTR GCA 90 bp | AGCTGTGTAAACCTGGTGCCTGGTACTAAGGAGGAAGAGTGGCTAGAAGCCCTACCTGCCTCTGCCTCCTaGGTGCTGGGATTAAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: SCVNLVPGTKEEEWLEALPASAS*VLGLKA Trigger: CGCCTTTAATCCCAGCACGCAGGAGGCAGAGGCAGG...TAGGGCTTCTAGCCACTCTTCCTCCTTAGTACCAGGCACCAGGTTTACACAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| CDS-3UTR GCA 90 bp | AAATTAGGCACGGAGTGCCTGTCAGATCCCAGGGCTCCTCTTTACACCACTGCTAAATCCGCCTGCCTCTaGCTCCTGCGTGCTGGGATT | + |
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Preference number: 4 (lower is better) Translates to: KLGTECLSDPRAPLYTTAKSACL*LLRAGI Trigger: AATCCCAGCACGCAGGAGGCAGAGGCAGGCGGATTT...AGCAGTGGTGTAAAGAGGAGCCCTGGGATCTGACAGGCACTCCGTGCCTAATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| CDS-3UTR GCA 90 bp | ACAGGTGCCGTGCTGTGGAAGCTTTTCCCACACTGTGGAATTGACCTTTTGGTTTGGTCCCTGTGCCCATaGCAAAGCCAGCTCGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: TGAVLWKLFPHCGIDLLVWSLCP*QSQLVC Trigger: ACACACGAGCTGGCTTTGGCATGGGCACAGGGACCA...AACCAAAAGGTCAATTCCACAGTGTGGGAAAAGCTTCCACAGCACGGCACCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129847.8 |
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| CDS-3UTR GCA 90 bp | ACAGGTGCCGTGCTGTGGAAGCTTTTCCCACACTGTGGAATTGACCTTTTGGTTTCATGGTGGTCCCTGTaGCCATGCCAAAGCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: TGAVLWKLFPHCGIDLLVSWWSL*PCQSQL Trigger: GAGCTGGCTTTGGCATGGGCACAGGGACCACCATGA...AACCAAAAGGTCAATTCCACAGTGTGGGAAAAGCTTCCACAGCACGGCACCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129847.8 |
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| CDS-3UTR CCA 90 bp | ATAGCTCACTGCATCCATGCCCTCAGCCCCACTGTTGCAGACACTTCTGACTCTGAGCCTCTGCTGAAATaGCTGGGTCTGACACCGTTT | + |
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Preference number: 4 (lower is better) Translates to: IAHCIHALSPTVADTSDSEPLLK*LGLTPF Trigger: AAACGGTGTCAGACCCAGCCATTTCAGCAGAGGCTC...AGAGTCAGAAGTGTCTGCAACAGTGGGGCTGAGGGCATGGATGCAGTGAGCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108428.8 |
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| CDS-3UTR CCA 90 bp | ACAGGTGCCGTGCTGTGGAAGCTTTTCCCACACTGTGGAATTGACCTTTTGGTTTGTGTTGAGTCATGGTaGTCCCTGTGCCCATGCCAA | + |
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Preference number: 4 (lower is better) Translates to: TGAVLWKLFPHCGIDLLVCVESW*SLCPCQ Trigger: TTGGCATGGGCACAGGGACCACCATGACTCAACACA...AACCAAAAGGTCAATTCCACAGTGTGGGAAAAGCTTCCACAGCACGGCACCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129847.8 |
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| CDS GCA 72 bp | TACAGTAACTCCGGGCATCTGAGGAAGGGACAAGCATaGCGAGGTCAGGCTTGGTGCAAACCCCTGACGTGG | + |
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Preference number: 6 (lower is better) Translates to: YSNSGHLRKGQA*RGQAWCKPLTW Trigger: CCACGTCAGGGGTTTGCACCAAGCCTGACCTCGGCATGCTTGTCCCTTCCTCAGATGCCCGGAGTTACTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124035.2 |
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