Pregenerated sensors for RPS16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037563

Ensembl transcript IDs: ENSMUST00000082134.6

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	AAATGTGGTGGTCCACGCCTTTATTCCCAGCACTCGTaGATCAGAAGGAGGCACAGCTCTGGAGTCGATATA	+
Preference number: 3 (lower is better) Translates to: KCGGPRLYSQHS*IRRRHSSGVDI Trigger: TATATCGACTCCAGAGCTGTGCCTCCTTCTGATTCACGAGTGCTGGGAATAAAGGCGTGGACCACCACATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082134.6
CDS-3UTR CCA 90 bp	GCGTACACCTTTTATCCCAGCACTCCGGAGGCAGAGGCAGATGGATTTCTGAGTAGGGTCCGATCGTATTaGATGAGGATATCTTTGATC	+
Preference number: 4 (lower is better) Translates to: AYTFYPSTPEAEADGFLSRVRSY*MRISLI Trigger: GATCAAAGATATCCTCATCCAATACGATCGGACCCT...ACTCAGAAATCCATCTGCCTCTGCCTCCGGAGTGCTGGGATAAAAGGTGTACGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082134.6
CDS-3UTR GCA 90 bp	AGTTTCTTGCACTGTCCAACCACACTAATACTACAAAAAGAGACCAACACAAAATCCAGTAACTTGTACTaGAGCGTGCGCGGCTCGATC	+
Preference number: 4 (lower is better) Translates to: SFLHCPTTLILQKETNTKSSNLY*SVRGSI Trigger: GATCGAGCCGCGCACGCTGCAGTACAAGTTACTGGA...TTTTGTGTTGGTCTCTTTTTGTAGTATTAGTGTGGTTGGACAGTGCAAGAAACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082134.6
CDS-3UTR CAA 90 bp	GCGTACACCTTTTATCCCAGCACTCCGGAGGCAGAGGCAGATGGATTTCTGAGTGGACGTCCGTTCACCTaGATGAGCCCATTTCCCCGT	+
Preference number: 5 (lower is better) Translates to: AYTFYPSTPEAEADGFLSGRPFT*MSPFPR Trigger: ACGGGGAAATGGGCTCATCAAGGTGAACGGACGTCC...ACTCAGAAATCCATCTGCCTCTGCCTCCGGAGTGCTGGGATAAAAGGTGTACGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082134.6
CDS-3UTR CAA 90 bp	TACACACAAAAACAGAGCTCAAATGCTCTGGAAGGCAGCCATTACTCCTTAGTGACAGGCTCCAGTAACTaGTACTGCAGCGTGCGCGGC	+
Preference number: 5 (lower is better) Translates to: YTQKQSSNALEGSHYSLVTGSSN*YCSVRG Trigger: GCCGCGCACGCTGCAGTACAAGTTACTGGAGCCTGT...CACTAAGGAGTAATGGCTGCCTTCCAGAGCATTTGAGCTCTGTTTTTGTGTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082134.6
CDS-3UTR CAA 90 bp	GCGTACACCTTTTATCCCAGCACTCCGGAGGCAGAGGCAGATGGATTTCTGAGTCAGGGTCCGATCGTATaGGATGAGGATATCTTTGAT	+
Preference number: 5 (lower is better) Translates to: AYTFYPSTPEAEADGFLSQGPIV*DEDIFD Trigger: ATCAAAGATATCCTCATCCAATACGATCGGACCCTG...ACTCAGAAATCCATCTGCCTCTGCCTCCGGAGTGCTGGGATAAAAGGTGTACGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082134.6

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