Pregenerated sensors for RPS13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090862Ensembl transcript IDs: ENSMUST00000205490.2, ENSMUST00000205906.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CACTCAGACATCCAAGGAAGGTCAACCCAACATGGAAAGTCCTTCTaGTGGAAACTGCGAATGTTGGAACACCATCATCACTGTGAGCTT | + |
Preference number: 1 (lower is better) Translates to: HSDIQGRSTQHGKSF*WKLRMLEHHHHCEL Trigger: AAGCTCACAGTGATGATGGTGTTCCAACATTCGCAGTTTCCACCAGAAGGACTTTCCATGTTGGGTTGACCTTCCTTGGATGTCTGAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205906.2 |
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3UTR GCA 90 bp | CTTAGAATCAATTCAGTTAGATGTGACTCAATCCCAGACAGCCCTTaGTCCGCTGTGGAAGCAGGAGGAACCTTTTTAACATACGGACTA | + |
Preference number: 1 (lower is better) Translates to: LRINSVRCDSIPDSP*SAVEAGGTFLTYGL Trigger: TAGTCCGTATGTTAAAAAGGTTCCTCCTGCTTCCACAGCGGAGCAAGGGCTGTCTGGGATTGAGTCACATCTAACTGAATTGATTCTAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000205906.2 |
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3UTR GCA 90 bp | GGTAACATTTCAAGAGAACACTGTCATGTGATTATATATCATCCATaGAAGCTTCCCCACTACTATGACAGAGATGAACTGACACTTAGC | + |
Preference number: 1 (lower is better) Translates to: GNISREHCHVIIYHP*KLPHYYDRDELTLS Trigger: GCTAAGTGTCAGTTCATCTCTGTCATAGTAGTGGGGAAGCTTGCATGGATGATATATAATCACATGACAGTGTTCTCTTGAAATGTTACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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3UTR-3UTR TCA 90 bp | ACCCAACATGGAAAGTCCTTCTGGTGGAAACTGCGAATGTTGGAACACCATCATGATATTTTCCTCCGATaGGCAGTTATTCCCAGACTC | + |
Preference number: 2 (lower is better) Translates to: TQHGKSFWWKLRMLEHHHDIFLR*AVIPRL Trigger: GAGTCTGGGAATAACTGCTCATCGGAGGAAAATATC...ATGATGGTGTTCCAACATTCGCAGTTTCCACCAGAAGGACTTTCCATGTTGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205906.2 |
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3UTR-3UTR TCA 90 bp | ACACACACATGCGATAAAACCCTAACAGCCAAACTCCAAATTTCCAGCTCACTCACACCATCATCACTGTaGGCTTGCCAGAATACATCT | + |
Preference number: 2 (lower is better) Translates to: THTCDKTLTAKLQISSSLTPSSL*ACQNTS Trigger: AGATGTATTCTGGCAAGCTCACAGTGATGATGGTGT...GAGTGAGCTGGAAATTTGGAGTTTGGCTGTTAGGGTTTTATCGCATGTGTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205906.2 |
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3UTR-3UTR TCA 90 bp | TCAAATGCAGAGACCTGCTTGCCTCTAGGTAACATTTCTTCCTTCCTTTCTTTTATGACAGAGATGAACTaGCACTTAGCCAAAAAGGCA | + |
Preference number: 2 (lower is better) Translates to: SNAETCLPLGNISSFLSFMTEMN*HLAKKA Trigger: TGCCTTTTTGGCTAAGTGTCAGTTCATCTCTGTCAT...AAAAGAAAGGAAGGAAGAAATGTTACCTAGAGGCAAGCAGGTCTCTGCATTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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3UTR-3UTR GCA 90 bp | GCCAAATCTAAGTGGCCAAATGGTGGAAAGATCAACCTATCTGCCATAAACAGTGCCAAAAAGGCAAAATaGCTACCACTATTCATTATT | + |
Preference number: 2 (lower is better) Translates to: AKSKWPNGGKINLSAINSAKKAK*LPLFII Trigger: AATAATGAATAGTGGTAGGCATTTTGCCTTTTTGGC...ACTGTTTATGGCAGATAGGTTGATCTTTCCACCATTTGGCCACTTAGATTTGGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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3UTR CCA 72 bp | ATCCAAGGAAGGTCAACCCAACATGGAAAGTCCTTCTaGTGGAAACTGCGAATGTTGGAACACCATCATCAC | + |
Preference number: 3 (lower is better) Translates to: IQGRSTQHGKSF*WKLRMLEHHHH Trigger: GTGATGATGGTGTTCCAACATTCGCAGTTTCCACCAGAAGGACTTTCCATGTTGGGTTGACCTTCCTTGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205906.2 |
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3UTR TCA 72 bp | GTGGAAACTGCGAATGTTGGAACACCATCATCACTGTaGGCTTGCCAGAATACATCTGACCAGAGGAAACAA | + |
Preference number: 3 (lower is better) Translates to: VETANVGTPSSL*ACQNTSDQRKQ Trigger: TTGTTTCCTCTGGTCAGATGTATTCTGGCAAGCTCACAGTGATGATGGTGTTCCAACATTCGCAGTTTCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205906.2 |
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3UTR CCA 72 bp | AACATGGAAAGTCCTTCTGGTGGAAACTGCGAATGTTaGAACACCATCATCACTGTGAGCTTGCCAGAATAC | + |
Preference number: 3 (lower is better) Translates to: NMESPSGGNCEC*NTIITVSLPEY Trigger: GTATTCTGGCAAGCTCACAGTGATGATGGTGTTCCAACATTCGCAGTTTCCACCAGAAGGACTTTCCATGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205906.2 |
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3UTR GCA 72 bp | GACTGGAGCTATCCCCAAACCGCTACAATACCCAATTaGATACAATGCATCAAACTAAGCCCTAAGTTTAAG | + |
Preference number: 3 (lower is better) Translates to: DWSYPQTATIPN*IQCIKLSPKFK Trigger: CTTAAACTTAGGGCTTAGTTTGATGCATTGTATGCAATTGGGTATTGTAGCGGTTTGGGGATAGCTCCAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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3UTR GCA 72 bp | TCAAGAGAACACTGTCATGTGATTATATATCATCCATaGAAGCTTCCCCACTACTATGACAGAGATGAACTG | + |
Preference number: 3 (lower is better) Translates to: SREHCHVIIYHP*KLPHYYDRDEL Trigger: CAGTTCATCTCTGTCATAGTAGTGGGGAAGCTTGCATGGATGATATATAATCACATGACAGTGTTCTCTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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CDS-3UTR CCA 90 bp | CCCTTGCTCCGCTGTGGAAGCAGGAGGAACCTTTTTAACATACGGACTAGACACTCAACTTCAGCCACGTaGGGACGCTACGGCGGTAGG | + |
Preference number: 4 (lower is better) Translates to: PLLRCGSRRNLFNIRTRHSTSAT*GRYGGR Trigger: CCTACCGCCGTAGCGTCCCCACGTGGCTGAAGTTGA...GTGTCTAGTCCGTATGTTAAAAAGGTTCCTCCTGCTTCCACAGCGGAGCAAGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000205906.2 |
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CDS-3UTR CCA 90 bp | AAGAGAACACTGTCATGTGATTATATATCATCCATGCAAGCTTCCCCACTACTATCAACTTCAGCCACGTaGGGACGCTACGGCGGTAGG | + |
Preference number: 4 (lower is better) Translates to: KRTLSCDYISSMQASPLLSTSAT*GRYGGR Trigger: CCTACCGCCGTAGCGTCCCCACGTGGCTGAAGTTGA...TAGTAGTGGGGAAGCTTGCATGGATGATATATAATCACATGACAGTGTTCTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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CDS-3UTR CCA 90 bp | TCTAAGGCCAAATCTAAGTGGCCAAATGGTGGAAAGATCAACCTATCTGCCATAAGGATTACACCTATCTaGGAGGGAGTCAGGCCTTTC | + |
Preference number: 4 (lower is better) Translates to: SKAKSKWPNGGKINLSAIRITPI*EGVRPF Trigger: GAAAGGCCTGACTCCCTCCCAGATAGGTGTAATCCT...TATGGCAGATAGGTTGATCTTTCCACCATTTGGCCACTTAGATTTGGCCTTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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CDS-3UTR TCA 90 bp | CATTTCAAGAGAACACTGTCATGTGATTATATATCATCCATGCAAGCTTCCCCACAAGGCCTTTGGACTTaGGGATTCTCAAGATTTTAT | + |
Preference number: 4 (lower is better) Translates to: HFKRTLSCDYISSMQASPQGLWT*GFSRFY Trigger: ATAAAATCTTGAGAATCCTCAAGTCCAAAGGCCTTG...TGGGGAAGCTTGCATGGATGATATATAATCACATGACAGTGTTCTCTTGAAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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CDS-3UTR CAA 90 bp | GCCAAATCTAAGTGGCCAAATGGTGGAAAGATCAACCTATCTGCCATAAACAGTTCAGGGGCAAGGCCTTaGGACTTGAGGATTCTCAAG | + |
Preference number: 5 (lower is better) Translates to: AKSKWPNGGKINLSAINSSGARP*DLRILK Trigger: CTTGAGAATCCTCAAGTCCAAAGGCCTTGCCCCTGA...ACTGTTTATGGCAGATAGGTTGATCTTTCCACCATTTGGCCACTTAGATTTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |
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CDS-3UTR CAA 90 bp | TCTAAGGCCAAATCTAAGTGGCCAAATGGTGGAAAGATCAACCTATCTGCCATAGCAAGGCCTTTGGACTaGAGGATTCTCAAGATTTTA | + |
Preference number: 5 (lower is better) Translates to: SKAKSKWPNGGKINLSAIARPLD*RILKIL Trigger: TAAAATCTTGAGAATCCTCAAGTCCAAAGGCCTTGC...TATGGCAGATAGGTTGATCTTTCCACCATTTGGCCACTTAGATTTGGCCTTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205490.2 |