RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPS13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090862

Ensembl transcript IDs: ENSMUST00000205490.2, ENSMUST00000205906.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACTCAGACATCCAAGGAAGGTCAACCCAACATGGAAAGTCCTTCTaGTGGAAACTGCGAATGTTGGAACACCATCATCACTGTGAGCTT +
Preference number: 1 (lower is better)
Translates to: HSDIQGRSTQHGKSF*WKLRMLEHHHHCEL
Trigger: AAGCTCACAGTGATGATGGTGTTCCAACATTCGCAGTTTCCACCAGAAGGACTTTCCATGTTGGGTTGACCTTCCTTGGATGTCTGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205906.2
3UTR GCA 90 bp CTTAGAATCAATTCAGTTAGATGTGACTCAATCCCAGACAGCCCTTaGTCCGCTGTGGAAGCAGGAGGAACCTTTTTAACATACGGACTA +
Preference number: 1 (lower is better)
Translates to: LRINSVRCDSIPDSP*SAVEAGGTFLTYGL
Trigger: TAGTCCGTATGTTAAAAAGGTTCCTCCTGCTTCCACAGCGGAGCAAGGGCTGTCTGGGATTGAGTCACATCTAACTGAATTGATTCTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205906.2
3UTR GCA 90 bp GGTAACATTTCAAGAGAACACTGTCATGTGATTATATATCATCCATaGAAGCTTCCCCACTACTATGACAGAGATGAACTGACACTTAGC +
Preference number: 1 (lower is better)
Translates to: GNISREHCHVIIYHP*KLPHYYDRDELTLS
Trigger: GCTAAGTGTCAGTTCATCTCTGTCATAGTAGTGGGGAAGCTTGCATGGATGATATATAATCACATGACAGTGTTCTCTTGAAATGTTACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
3UTR-3UTR TCA 90 bp ACCCAACATGGAAAGTCCTTCTGGTGGAAACTGCGAATGTTGGAACACCATCATGATATTTTCCTCCGATaGGCAGTTATTCCCAGACTC +
Preference number: 2 (lower is better)
Translates to: TQHGKSFWWKLRMLEHHHDIFLR*AVIPRL
Trigger: GAGTCTGGGAATAACTGCTCATCGGAGGAAAATATC...ATGATGGTGTTCCAACATTCGCAGTTTCCACCAGAAGGACTTTCCATGTTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205906.2
3UTR-3UTR TCA 90 bp ACACACACATGCGATAAAACCCTAACAGCCAAACTCCAAATTTCCAGCTCACTCACACCATCATCACTGTaGGCTTGCCAGAATACATCT +
Preference number: 2 (lower is better)
Translates to: THTCDKTLTAKLQISSSLTPSSL*ACQNTS
Trigger: AGATGTATTCTGGCAAGCTCACAGTGATGATGGTGT...GAGTGAGCTGGAAATTTGGAGTTTGGCTGTTAGGGTTTTATCGCATGTGTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205906.2
3UTR-3UTR TCA 90 bp TCAAATGCAGAGACCTGCTTGCCTCTAGGTAACATTTCTTCCTTCCTTTCTTTTATGACAGAGATGAACTaGCACTTAGCCAAAAAGGCA +
Preference number: 2 (lower is better)
Translates to: SNAETCLPLGNISSFLSFMTEMN*HLAKKA
Trigger: TGCCTTTTTGGCTAAGTGTCAGTTCATCTCTGTCAT...AAAAGAAAGGAAGGAAGAAATGTTACCTAGAGGCAAGCAGGTCTCTGCATTTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
3UTR-3UTR GCA 90 bp GCCAAATCTAAGTGGCCAAATGGTGGAAAGATCAACCTATCTGCCATAAACAGTGCCAAAAAGGCAAAATaGCTACCACTATTCATTATT +
Preference number: 2 (lower is better)
Translates to: AKSKWPNGGKINLSAINSAKKAK*LPLFII
Trigger: AATAATGAATAGTGGTAGGCATTTTGCCTTTTTGGC...ACTGTTTATGGCAGATAGGTTGATCTTTCCACCATTTGGCCACTTAGATTTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
3UTR CCA 72 bp ATCCAAGGAAGGTCAACCCAACATGGAAAGTCCTTCTaGTGGAAACTGCGAATGTTGGAACACCATCATCAC +
Preference number: 3 (lower is better)
Translates to: IQGRSTQHGKSF*WKLRMLEHHHH
Trigger: GTGATGATGGTGTTCCAACATTCGCAGTTTCCACCAGAAGGACTTTCCATGTTGGGTTGACCTTCCTTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205906.2
3UTR TCA 72 bp GTGGAAACTGCGAATGTTGGAACACCATCATCACTGTaGGCTTGCCAGAATACATCTGACCAGAGGAAACAA +
Preference number: 3 (lower is better)
Translates to: VETANVGTPSSL*ACQNTSDQRKQ
Trigger: TTGTTTCCTCTGGTCAGATGTATTCTGGCAAGCTCACAGTGATGATGGTGTTCCAACATTCGCAGTTTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205906.2
3UTR CCA 72 bp AACATGGAAAGTCCTTCTGGTGGAAACTGCGAATGTTaGAACACCATCATCACTGTGAGCTTGCCAGAATAC +
Preference number: 3 (lower is better)
Translates to: NMESPSGGNCEC*NTIITVSLPEY
Trigger: GTATTCTGGCAAGCTCACAGTGATGATGGTGTTCCAACATTCGCAGTTTCCACCAGAAGGACTTTCCATGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205906.2
3UTR GCA 72 bp GACTGGAGCTATCCCCAAACCGCTACAATACCCAATTaGATACAATGCATCAAACTAAGCCCTAAGTTTAAG +
Preference number: 3 (lower is better)
Translates to: DWSYPQTATIPN*IQCIKLSPKFK
Trigger: CTTAAACTTAGGGCTTAGTTTGATGCATTGTATGCAATTGGGTATTGTAGCGGTTTGGGGATAGCTCCAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
3UTR GCA 72 bp TCAAGAGAACACTGTCATGTGATTATATATCATCCATaGAAGCTTCCCCACTACTATGACAGAGATGAACTG +
Preference number: 3 (lower is better)
Translates to: SREHCHVIIYHP*KLPHYYDRDEL
Trigger: CAGTTCATCTCTGTCATAGTAGTGGGGAAGCTTGCATGGATGATATATAATCACATGACAGTGTTCTCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
CDS-3UTR CCA 90 bp CCCTTGCTCCGCTGTGGAAGCAGGAGGAACCTTTTTAACATACGGACTAGACACTCAACTTCAGCCACGTaGGGACGCTACGGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: PLLRCGSRRNLFNIRTRHSTSAT*GRYGGR
Trigger: CCTACCGCCGTAGCGTCCCCACGTGGCTGAAGTTGA...GTGTCTAGTCCGTATGTTAAAAAGGTTCCTCCTGCTTCCACAGCGGAGCAAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205906.2
CDS-3UTR CCA 90 bp AAGAGAACACTGTCATGTGATTATATATCATCCATGCAAGCTTCCCCACTACTATCAACTTCAGCCACGTaGGGACGCTACGGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: KRTLSCDYISSMQASPLLSTSAT*GRYGGR
Trigger: CCTACCGCCGTAGCGTCCCCACGTGGCTGAAGTTGA...TAGTAGTGGGGAAGCTTGCATGGATGATATATAATCACATGACAGTGTTCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
CDS-3UTR CCA 90 bp TCTAAGGCCAAATCTAAGTGGCCAAATGGTGGAAAGATCAACCTATCTGCCATAAGGATTACACCTATCTaGGAGGGAGTCAGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: SKAKSKWPNGGKINLSAIRITPI*EGVRPF
Trigger: GAAAGGCCTGACTCCCTCCCAGATAGGTGTAATCCT...TATGGCAGATAGGTTGATCTTTCCACCATTTGGCCACTTAGATTTGGCCTTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
CDS-3UTR TCA 90 bp CATTTCAAGAGAACACTGTCATGTGATTATATATCATCCATGCAAGCTTCCCCACAAGGCCTTTGGACTTaGGGATTCTCAAGATTTTAT +
Preference number: 4 (lower is better)
Translates to: HFKRTLSCDYISSMQASPQGLWT*GFSRFY
Trigger: ATAAAATCTTGAGAATCCTCAAGTCCAAAGGCCTTG...TGGGGAAGCTTGCATGGATGATATATAATCACATGACAGTGTTCTCTTGAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
CDS-3UTR CAA 90 bp GCCAAATCTAAGTGGCCAAATGGTGGAAAGATCAACCTATCTGCCATAAACAGTTCAGGGGCAAGGCCTTaGGACTTGAGGATTCTCAAG +
Preference number: 5 (lower is better)
Translates to: AKSKWPNGGKINLSAINSSGARP*DLRILK
Trigger: CTTGAGAATCCTCAAGTCCAAAGGCCTTGCCCCTGA...ACTGTTTATGGCAGATAGGTTGATCTTTCCACCATTTGGCCACTTAGATTTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2
CDS-3UTR CAA 90 bp TCTAAGGCCAAATCTAAGTGGCCAAATGGTGGAAAGATCAACCTATCTGCCATAGCAAGGCCTTTGGACTaGAGGATTCTCAAGATTTTA +
Preference number: 5 (lower is better)
Translates to: SKAKSKWPNGGKINLSAIARPLD*RILKIL
Trigger: TAAAATCTTGAGAATCCTCAAGTCCAAAGGCCTTGC...TATGGCAGATAGGTTGATCTTTCCACCATTTGGCCACTTAGATTTGGCCTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205490.2