Pregenerated sensors for RPS10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052146Ensembl transcript IDs: ENSMUST00000155071.9
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGCCCTAGCCTTCAGTTAATAGGAGCACACCACAGACACAAGATCTGCAAAGCAGTTCCACTGCAAGACTaGTCCCAACACAGTAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: GPSLQLIGAHHRHKICKAVPLQD*SQHSRE Trigger: TTCCCTACTGTGTTGGGATCAGTCTTGCAGTGGAAC...TGCTTTGCAGATCTTGTGTCTGTGGTGTGCTCCTATTAACTGAAGGCTAGGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155071.9 |
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| 3UTR GCA 72 bp | CTTCAGTTAATAGGAGCACACCACAGACACAAGATCTaGAAAGCATGTTCACACAGTTCCACTGCAAGACTG | + |
|
Preference number: 3 (lower is better) Translates to: LQLIGAHHRHKI*KACSHSSTARL Trigger: CAGTCTTGCAGTGGAACTGTGTGAACATGCTTTGCAGATCTTGTGTCTGTGGTGTGCTCCTATTAACTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155071.9 |
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| CDS-3UTR GCA 90 bp | AGCACACCACAGACACAAGATCTGCAAAGCATGTTCACACAGTTCCACTGCAAGCGGTCTCGGGACGGCTaGGACGCAGGGTGGCGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: STPQTQDLQSMFTQFHCKRSRDG*DAGWRA Trigger: TGCCCGCCACCCTGCGTCGCAGCCGTCCCGAGACCG...CTTGCAGTGGAACTGTGTGAACATGCTTTGCAGATCTTGTGTCTGTGGTGTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155071.9 |
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| CDS-3UTR GCA 90 bp | AGCACACCACAGACACAAGATCTGCAAAGCATGTTCACACAGTTCCACTGCAAGCCAGGCCCCAGTGACTaGAGAGCAGACAAGAAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: STPQTQDLQSMFTQFHCKPGPSD*RADKKE Trigger: CTCTTTCTTGTCTGCTCTGCAGTCACTGGGGCCTGG...CTTGCAGTGGAACTGTGTGAACATGCTTTGCAGATCTTGTGTCTGTGGTGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155071.9 |
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| CDS-3UTR CCA 90 bp | CAGACACAAGATCTGCAAAGCATGTTCACACAGTTCCACTGCAAGACTGATCCCGAGATACTCACAAACTaGAACTCAGTGGCTGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: QTQDLQSMFTQFHCKTDPEILTN*NSVAEP Trigger: TGGCTCAGCCACTGAGTTCCAGTTTGTGAGTATCTC...GGGATCAGTCTTGCAGTGGAACTGTGTGAACATGCTTTGCAGATCTTGTGTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155071.9 |
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