RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPRML (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046215

Ensembl transcript IDs: ENSMUST00000057870.4

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCGTCCCCGGCCCCTGCTGGAGCGCACACAGGACGGAGTCTGGCATaGCAGTCCCTTCGCGCACCGCCGCCGCTGAGTCCTATGGTGTCC +
Preference number: 1 (lower is better)
Translates to: ASPAPAGAHTGRSLA*QSLRAPPPLSPMVS
Trigger: GGACACCATAGGACTCAGCGGCGGCGGTGCGCGAAGGGACTGTCATGCCAGACTCCGTCCTGTGTGCGCTCCAGCAGGGGCCGGGGACGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
3UTR-3UTR TCA 90 bp TGGAGCGCACACAGGACGGAGTCTGGCATGACAGTCCCTTCGCGCACCGCCGCCCAGCGGCCAAAGCCTTaGGAAAGAGGCTCCGTAGTC +
Preference number: 2 (lower is better)
Translates to: WSAHRTESGMTVPSRTAAQRPKP*ERGSVV
Trigger: GACTACGGAGCCTCTTTCTCAAGGCTTTGGCCGCTG...GGCGGCGGTGCGCGAAGGGACTGTCATGCCAGACTCCGTCCTGTGTGCGCTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
3UTR-3UTR TCA 90 bp ACGGCTATGGTTTTATTACAAAATTTCTTCTCAGACGCAATGCGAGATCAGATGGGACGGAGTCTGGCATaGCAGTCCCTTCGCGCACCG +
Preference number: 2 (lower is better)
Translates to: TAMVLLQNFFSDAMRDQMGRSLA*QSLRAP
Trigger: CGGTGCGCGAAGGGACTGTCATGCCAGACTCCGTCC...CATCTGATCTCGCATTGCGTCTGAGAAGAAATTTTGTAATAAAACCATAGCCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
3UTR TCA 72 bp GCCCCTGCTGGAGCGCACACAGGACGGAGTCTGGCATaGCAGTCCCTTCGCGCACCGCCGCCGCTGAGTCCT +
Preference number: 3 (lower is better)
Translates to: APAGAHTGRSLA*QSLRAPPPLSP
Trigger: AGGACTCAGCGGCGGCGGTGCGCGAAGGGACTGTCATGCCAGACTCCGTCCTGTGTGCGCTCCAGCAGGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
3UTR TCA 72 bp AGGTACTTCGTTGATCGCAGGCAGCGGCCAAAGCCTTaGGAAAGAGGCTCCGTAGTCTCTTCCTCGCGGTGC +
Preference number: 3 (lower is better)
Translates to: RYFVDRRQRPKP*ERGSVVSSSRC
Trigger: GCACCGCGAGGAAGAGACTACGGAGCCTCTTTCTCAAGGCTTTGGCCGCTGCCTGCGATCAACGAAGTACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
3UTR GCA 72 bp AGACGCAATGCGAGATCAGATGCAAAATCTCAGCGATaGACCTCTTCCCTGAGCCCTCCTTGGAGCTGGCCC +
Preference number: 3 (lower is better)
Translates to: RRNARSDAKSQR*TSSLSPPWSWP
Trigger: GGGCCAGCTCCAAGGAGGGCTCAGGGAAGAGGTGCATCGCTGAGATTTTGCATCTGATCTCGCATTGCGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
3UTR-3UTR CAA 90 bp ATGTATAAGGAAGCCCGACGGCTATGGTTTTATTACAAAATTTCTTCTCAGACGTTCCCTGAGCCCTCCTaGGAGCTGGCCCCCACCAAC +
Preference number: 3 (lower is better)
Translates to: MYKEARRLWFYYKISSQTFPEPS*ELAPTN
Trigger: GTTGGTGGGGGCCAGCTCCAAGGAGGGCTCAGGGAA...CGTCTGAGAAGAAATTTTGTAATAAAACCATAGCCGTCGGGCTTCCTTATACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR GCA 90 bp GAAGAACCCTGCGTCCCCGGCCCCTGCTGGAGCGCACACAGGACGGAGTCTGGCGCGACACCCACAGGCTaGGTTCGTCCGGCGCCAGTC +
Preference number: 4 (lower is better)
Translates to: EEPCVPGPCWSAHRTESGATPTG*VRPAPV
Trigger: GACTGGCGCCGGACGAACGCAGCCTGTGGGTGTCGC...GCCAGACTCCGTCCTGTGTGCGCTCCAGCAGGGGCCGGGGACGCAGGGTTCTTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR CCA 90 bp AAGAACCCTGCGTCCCCGGCCCCTGCTGGAGCGCACACAGGACGGAGTCTGGCACGGCGCCCACGTCCTTaGAGGGCCTGCGCTCCTGCA +
Preference number: 4 (lower is better)
Translates to: KNPASPAPAGAHTGRSLARRPRP*RACAPA
Trigger: TGCAGGAGCGCAGGCCCTCCAAGGACGTGGGCGCCG...TGCCAGACTCCGTCCTGTGTGCGCTCCAGCAGGGGCCGGGGACGCAGGGTTCTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR GCA 90 bp GAAGAACCCTGCGTCCCCGGCCCCTGCTGGAGCGCACACAGGACGGAGTCTGGCAGCAGTCTAGCCACGTaGCCAGCCCGTGGCTGCGGT +
Preference number: 4 (lower is better)
Translates to: EEPCVPGPCWSAHRTESGSSLAT*PARGCG
Trigger: ACCGCAGCCACGGGCTGGGCACGTGGCTAGACTGCT...GCCAGACTCCGTCCTGTGTGCGCTCCAGCAGGGGCCGGGGACGCAGGGTTCTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR GCA 90 bp AAACCTGTGAAGAACCCTGCGTCCCCGGCCCCTGCTGGAGCGCACACAGGACGGTGCCCAGCCCGTGGCTaGGGTTTCCCAGGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: KPVKNPASPAPAGAHTGRCPARG*GFPGWL
Trigger: GAGCCACCCTGGGAAACCGCAGCCACGGGCTGGGCA...CCGTCCTGTGTGCGCTCCAGCAGGGGCCGGGGACGCAGGGTTCTTCACAGGTTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR GCA 90 bp TGGAGCGCACACAGGACGGAGTCTGGCATGACAGTCCCTTCGCGCACCGCCGCCCAAAGCACGGCGATCTaGGCCACGCGCGACACCCAC +
Preference number: 4 (lower is better)
Translates to: WSAHRTESGMTVPSRTAAQSTAI*ATRDTH
Trigger: GTGGGTGTCGCGCGTGGCGCAGATCGCCGTGCTTTG...GGCGGCGGTGCGCGAAGGGACTGTCATGCCAGACTCCGTCCTGTGTGCGCTCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR CCA 90 bp GTCCCCGGCCCCTGCTGGAGCGCACACAGGACGGAGTCTGGCATGACAGTCCCTTCTTCCAGGCCGCTGTaGTTCAGGAAGCTCACGTTC +
Preference number: 4 (lower is better)
Translates to: VPGPCWSAHRTESGMTVPSSRPL*FRKLTF
Trigger: GAACGTGAGCTTCCTGAACCACAGCGGCCTGGAAGA...AGGGACTGTCATGCCAGACTCCGTCCTGTGTGCGCTCCAGCAGGGGCCGGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
3UTR CAA 72 bp AAAATCTCAGCGATGCACCTCTTCCCTGAGCCCTCCTaGGAGCTGGCCCCCACCAACACGGCCGACATCCCC +
Preference number: 4 (lower is better)
Translates to: KISAMHLFPEPS*ELAPTNTADIP
Trigger: GGGGATGTCGGCCGTGTTGGTGGGGGCCAGCTCCAAGGAGGGCTCAGGGAAGAGGTGCATCGCTGAGATTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR CCA 90 bp GCAAAATCTCAGCGATGCACCTCTTCCCTGAGCCCTCCTTGGAGCTGGCCCCCAAGTATAGTCCCAGGATaGCGGCGCCCACGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: AKSQRCTSSLSPPWSWPPSIVPG*RRPRPW
Trigger: CCAAGGACGTGGGCGCCGCCATCCTGGGACTATACT...TGGGGGCCAGCTCCAAGGAGGGCTCAGGGAAGAGGTGCATCGCTGAGATTTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR CCA 90 bp ATGTATAAGGAAGCCCGACGGCTATGGTTTTATTACAAAATTTCTTCTCAGACGGTCGCTGGCGGTCAGTaGTGCGCCGCCGGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: MYKEARRLWFYYKISSQTVAGGQ*CAAGAA
Trigger: TGCTGCCCCGGCGGCGCACCACTGACCGCCAGCGAC...CGTCTGAGAAGAAATTTTGTAATAAAACCATAGCCGTCGGGCTTCCTTATACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR CCA 90 bp ATGTATAAGGAAGCCCGACGGCTATGGTTTTATTACAAAATTTCTTCTCAGACGCACGTGCCCAGCCCGTaGCTGCGGTTTCCCAGGGTG +
Preference number: 4 (lower is better)
Translates to: MYKEARRLWFYYKISSQTHVPSP*LRFPRV
Trigger: CACCCTGGGAAACCGCAGCCACGGGCTGGGCACGTG...CGTCTGAGAAGAAATTTTGTAATAAAACCATAGCCGTCGGGCTTCCTTATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR GCA 90 bp ATGTATAAGGAAGCCCGACGGCTATGGTTTTATTACAAAATTTCTTCTCAGACGCGTCCTTGGAGGGCCTaGGCTCCTGCATCAGAAAGT +
Preference number: 4 (lower is better)
Translates to: MYKEARRLWFYYKISSQTRPWRA*APASES
Trigger: ACTTTCTGATGCAGGAGCGCAGGCCCTCCAAGGACG...CGTCTGAGAAGAAATTTTGTAATAAAACCATAGCCGTCGGGCTTCCTTATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR GCA 90 bp ATAAGGAAGCCCGACGGCTATGGTTTTATTACAAAATTTCTTCTCAGACGCAATGAGGGCCTGCGCTCCTaGATCAGAAAGTTGATCATG +
Preference number: 4 (lower is better)
Translates to: IRKPDGYGFITKFLLRRNEGLRS*IRKLIM
Trigger: CATGATCAACTTTCTGATGCAGGAGCGCAGGCCCTC...ATTGCGTCTGAGAAGAAATTTTGTAATAAAACCATAGCCGTCGGGCTTCCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS GCA 90 bp CGCTGGCGGTCAGTGGTGCGCCGCCGGGGCAGCAGTCTAGCCACGTaGCCAGCCCGTGGCTGCGGTTTCCCAGGGTGGCTCGGGCGTCAC +
Preference number: 5 (lower is better)
Translates to: RWRSVVRRRGSSLAT*PARGCGFPGWLGRH
Trigger: GTGACGCCCGAGCCACCCTGGGAAACCGCAGCCACGGGCTGGGCACGTGGCTAGACTGCTGCCCCGGCGGCGCACCACTGACCGCCAGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS GCA 90 bp GCACGCAAAGCACGGCGATCTGCGCCACGCGCGACACCCACAGGCTaGGTTCGTCCGGCGCCAGTCCTGCGGGGACCCCGTCGCTGGCGG +
Preference number: 5 (lower is better)
Translates to: ARKARRSAPRATPTG*VRPAPVLRGPRRWR
Trigger: CCGCCAGCGACGGGGTCCCCGCAGGACTGGCGCCGGACGAACGCAGCCTGTGGGTGTCGCGCGTGGCGCAGATCGCCGTGCTTTGCGTGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS GCA 90 bp GTGCGCCGCCGGGGCAGCAGTCTAGCCACGTGCCCAGCCCGTGGCTaGGGTTTCCCAGGGTGGCTCGGGCGTCACCACCCACCTCTTCCA +
Preference number: 5 (lower is better)
Translates to: VRRRGSSLATCPARG*GFPGWLGRHHPPLP
Trigger: TGGAAGAGGTGGGTGGTGACGCCCGAGCCACCCTGGGAAACCGCAGCCACGGGCTGGGCACGTGGCTAGACTGCTGCCCCGGCGGCGCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS CCA 90 bp AGTGGTGCGCCGCCGGGGCAGCAGTCTAGCCACGTGCCCAGCCCGTaGCTGCGGTTTCCCAGGGTGGCTCGGGCGTCACCACCCACCTCT +
Preference number: 5 (lower is better)
Translates to: SGAPPGQQSSHVPSP*LRFPRVARASPPTS
Trigger: AGAGGTGGGTGGTGACGCCCGAGCCACCCTGGGAAACCGCAGCCACGGGCTGGGCACGTGGCTAGACTGCTGCCCCGGCGGCGCACCACT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR CAA 90 bp GTCCCCGGCCCCTGCTGGAGCGCACACAGGACGGAGTCTGGCATGACAGTCCCTGCGGCGCCCACGTCCTaGGAGGGCCTGCGCTCCTGC +
Preference number: 5 (lower is better)
Translates to: VPGPCWSAHRTESGMTVPAAPTS*EGLRSC
Trigger: GCAGGAGCGCAGGCCCTCCAAGGACGTGGGCGCCGC...AGGGACTGTCATGCCAGACTCCGTCCTGTGTGCGCTCCAGCAGGGGCCGGGGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS CCA 90 bp AGCAGTCTAGCCACGTGCCCAGCCCGTGGCTGCGGTTTCCCAGGGTaGCTCGGGCGTCACCACCCACCTCTTCCAGGCCGCTGTGGTTCA +
Preference number: 5 (lower is better)
Translates to: SSLATCPARGCGFPG*LGRHHPPLPGRCGS
Trigger: TGAACCACAGCGGCCTGGAAGAGGTGGGTGGTGACGCCCGAGCCACCCTGGGAAACCGCAGCCACGGGCTGGGCACGTGGCTAGACTGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR CAA 90 bp AAGAACCCTGCGTCCCCGGCCCCTGCTGGAGCGCACACAGGACGGAGTCTGGCATCCTGCATCAGAAAGTaGATCATGCTCTCGGACTTG +
Preference number: 5 (lower is better)
Translates to: KNPASPAPAGAHTGRSLASCIRK*IMLSDL
Trigger: CAAGTCCGAGAGCATGATCAACTTTCTGATGCAGGA...TGCCAGACTCCGTCCTGTGTGCGCTCCAGCAGGGGCCGGGGACGCAGGGTTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS-3UTR CAA 90 bp GCAAAATCTCAGCGATGCACCTCTTCCCTGAGCCCTCCTTGGAGCTGGCCCCCAATCATGCTCTCGGACTaGATGAGCAGGTTACAGCCC +
Preference number: 5 (lower is better)
Translates to: AKSQRCTSSLSPPWSWPPIMLSD*MSRLQP
Trigger: GGGCTGTAACCTGCTCATCAAGTCCGAGAGCATGAT...TGGGGGCCAGCTCCAAGGAGGGCTCAGGGAAGAGGTGCATCGCTGAGATTTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS GCA 72 bp CGACACCCACAGGCTGCGTTCGTCCGGCGCCAGTCCTaGGGGGACCCCGTCGCTGGCGGTCAGTGGTGCGCC +
Preference number: 6 (lower is better)
Translates to: RHPQAAFVRRQS*GDPVAGGQWCA
Trigger: GGCGCACCACTGACCGCCAGCGACGGGGTCCCCGCAGGACTGGCGCCGGACGAACGCAGCCTGTGGGTGTCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS GCA 72 bp GCACGGCGATCTGCGCCACGCGCGACACCCACAGGCTaGGTTCGTCCGGCGCCAGTCCTGCGGGGACCCCGT +
Preference number: 6 (lower is better)
Translates to: ARRSAPRATPTG*VRPAPVLRGPR
Trigger: ACGGGGTCCCCGCAGGACTGGCGCCGGACGAACGCAGCCTGTGGGTGTCGCGCGTGGCGCAGATCGCCGTGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS CCA 72 bp GCCACGTGCCCAGCCCGTGGCTGCGGTTTCCCAGGGTaGCTCGGGCGTCACCACCCACCTCTTCCAGGCCGC +
Preference number: 6 (lower is better)
Translates to: ATCPARGCGFPG*LGRHHPPLPGR
Trigger: GCGGCCTGGAAGAGGTGGGTGGTGACGCCCGAGCCACCCTGGGAAACCGCAGCCACGGGCTGGGCACGTGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4
CDS GCA 72 bp CGGGGCAGCAGTCTAGCCACGTGCCCAGCCCGTGGCTaGGGTTTCCCAGGGTGGCTCGGGCGTCACCACCCA +
Preference number: 6 (lower is better)
Translates to: RGSSLATCPARG*GFPGWLGRHHP
Trigger: TGGGTGGTGACGCCCGAGCCACCCTGGGAAACCGCAGCCACGGGCTGGGCACGTGGCTAGACTGCTGCCCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057870.4