Pregenerated sensors for RPRM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075334Ensembl transcript IDs: ENSMUST00000100089.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGACTCCGACAGGTTTGCGTTGCTCGGTCCGTGATGGTGAGGGGTaGATCGCGGCTGGCGGAGTACTGGAGGTGCCAGAAGGGAGGCAC | + |
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Preference number: 1 (lower is better) Translates to: LTPTGLRCSVRDGEG*IAAGGVLEVPEGRH Trigger: GTGCCTCCCTTCTGGCACCTCCAGTACTCCGCCAGCCGCGATGCACCCCTCACCATCACGGACCGAGCAACGCAAACCTGTCGGAGTCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 90 bp | CCGCCTTGCTCGGCCTCTCAAGCTGTCCCCAGTGCTGAGCCCACCTaGAGGTGGAAAGGGGCCTTCGCCGCCTGGTTCATCTCCCAGTAT | + |
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Preference number: 1 (lower is better) Translates to: PPCSASQAVPSAEPT*RWKGAFAAWFISQY Trigger: ATACTGGGAGATGAACCAGGCGGCGAAGGCCCCTTTCCACCTGCAGGTGGGCTCAGCACTGGGGACAGCTTGAGAGGCCGAGCAAGGCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CCA 90 bp | TGCTCGGCCTCTCAAGCTGTCCCCAGTGCTGAGCCCACCTGCAGGTaGAAAGGGGCCTTCGCCGCCTGGTTCATCTCCCAGTATCCCACG | + |
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Preference number: 1 (lower is better) Translates to: CSASQAVPSAEPTCR*KGAFAAWFISQYPT Trigger: CGTGGGATACTGGGAGATGAACCAGGCGGCGAAGGCCCCTTTCCACCTGCAGGTGGGCTCAGCACTGGGGACAGCTTGAGAGGCCGAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CCA 90 bp | CCCAGTGCTGAGCCCACCTGCAGGTGGAAAGGGGCCTTCGCCGCCTaGTTCATCTCCCAGTATCCCACGCCAGCAGCCACTCCCAAAGTT | + |
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Preference number: 1 (lower is better) Translates to: PSAEPTCRWKGAFAA*FISQYPTPAATPKV Trigger: AACTTTGGGAGTGGCTGCTGGCGTGGGATACTGGGAGATGAACCAGGCGGCGAAGGCCCCTTTCCACCTGCAGGTGGGCTCAGCACTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 90 bp | CTCCCAGTATCCCACGCCAGCAGCCACTCCCAAAGTTCTGCGCCCTaGTTTTGCCACCTGCTGCTGTATCCCGAAGTCTGGGCGCTCCTC | + |
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Preference number: 1 (lower is better) Translates to: LPVSHASSHSQSSAP*FCHLLLYPEVWALL Trigger: GAGGAGCGCCCAGACTTCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTGGGAGTGGCTGCTGGCGTGGGATACTGGGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 90 bp | ACGCCAGCAGCCACTCCCAAAGTTCTGCGCCCTGCTTTTGCCACCTaGTGCTGTATCCCGAAGTCTGGGCGCTCCTCCTGTACAGTCTTG | + |
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Preference number: 1 (lower is better) Translates to: TPAATPKVLRPAFAT*CCIPKSGRSSCTVL Trigger: CAAGACTGTACAGGAGGAGCGCCCAGACTTCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTGGGAGTGGCTGCTGGCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 90 bp | GGTTCATCTCCCAGTATCCCACGCCAGCAGCCACTCCCAAAGTTCTaGGCCCTGCTTTTGCCACCTGCTGCTGTATCCCGAAGTCTGGGC | + |
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Preference number: 1 (lower is better) Translates to: GSSPSIPRQQPLPKF*ALLLPPAAVSRSLG Trigger: GCCCAGACTTCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTGGGAGTGGCTGCTGGCGTGGGATACTGGGAGATGAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR TCA 90 bp | GCAGCGTGGCGAATAAACAGTCACTTTTTCCGGTCACTGGGCCTCTaGATACACACCCATCCACACCCCGCCTTGCTCGGCCTCTCAAGC | + |
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Preference number: 1 (lower is better) Translates to: AAWRINSHFFRSLGL*IHTHPHPALLGLSS Trigger: GCTTGAGAGGCCGAGCAAGGCGGGGTGTGGATGGGTGTGTATTCAGAGGCCCAGTGACCGGAAAAAGTGACTGTTTATTCGCCACGCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CCA 90 bp | CTTTTGTGGCGTAAACCGTGCAGACAGGAGCTAAGAATTCTACTCTaGATCTTTGTCCCGGGCGTAGCTGGAGCGCTAGCCTCCCATAAA | + |
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Preference number: 1 (lower is better) Translates to: LLWRKPCRQELRILL*IFVPGVAGALASHK Trigger: TTTATGGGAGGCTAGCGCTCCAGCTACGCCCGGGACAAAGATCCAGAGTAGAATTCTTAGCTCCTGTCTGCACGGTTTACGCCACAAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 90 bp | CAAACGGTGTCACGGATATCAAGAGCACTTTTGTGGCGTAAACCGTaGAGACAGGAGCTAAGAATTCTACTCTGGATCTTTGTCCCGGGC | + |
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Preference number: 1 (lower is better) Translates to: QTVSRISRALLWRKP*RQELRILLWIFVPG Trigger: GCCCGGGACAAAGATCCAGAGTAGAATTCTTAGCTCCTGTCTGCACGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CCA 90 bp | AAGAAAAAGAGTCAAACGGTGTCACGGATATCAAGAGCACTTTTGTaGCGTAAACCGTGCAGACAGGAGCTAAGAATTCTACTCTGGATC | + |
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Preference number: 1 (lower is better) Translates to: KKKSQTVSRISRALL*RKPCRQELRILLWI Trigger: GATCCAGAGTAGAATTCTTAGCTCCTGTCTGCACGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACTCTTTTTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR-3UTR CCA 90 bp | GTTCTGCGCCCTGCTTTTGCCACCTGCTGCTGTATCCCGAAGTCTGGGCGCTCCCGGCTGGCGGAGTACTaGAGGTGCCAGAAGGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: VLRPAFATCCCIPKSGRSRLAEY*RCQKGG Trigger: GCCTCCCTTCTGGCACCTCCAGTACTCCGCCAGCCG...GGAGCGCCCAGACTTCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR-3UTR CCA 90 bp | TGGGCCTCTGAATACACACCCATCCACACCCCGCCTTGCTCGGCCTCTCAAGCTGAGCCCACCTGCAGGTaGAAAGGGGCCTTCGCCGCC | + |
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Preference number: 2 (lower is better) Translates to: WASEYTPIHTPPCSASQAEPTCR*KGAFAA Trigger: GGCGGCGAAGGCCCCTTTCCACCTGCAGGTGGGCTC...AGCTTGAGAGGCCGAGCAAGGCGGGGTGTGGATGGGTGTGTATTCAGAGGCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CAA 90 bp | AGTATCCCACGCCAGCAGCCACTCCCAAAGTTCTGCGCCCTGCTTTaGCCACCTGCTGCTGTATCCCGAAGTCTGGGCGCTCCTCCTGTA | + |
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Preference number: 2 (lower is better) Translates to: SIPRQQPLPKFCALL*PPAAVSRSLGAPPV Trigger: TACAGGAGGAGCGCCCAGACTTCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTGGGAGTGGCTGCTGGCGTGGGATACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR-3UTR GCA 90 bp | ATCGATCAAAGTTTCACTCTCTTAGTAGGTCGCAAAACCCACACGCATCTATGTGCGGAGTACTGGAGGTaGCAGAAGGGAGGCACCCGC | + |
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Preference number: 2 (lower is better) Translates to: IDQSFTLLVGRKTHTHLCAEYWR*QKGGTR Trigger: GCGGGTGCCTCCCTTCTGGCACCTCCAGTACTCCGC...ACATAGATGCGTGTGGGTTTTGCGACCTACTAAGAGAGTGAAACTTTGATCGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCCTAAAACCACAGGTTACTATCGATCAAAGTTTCACTCTCTTAGTAGGTCGTCTGCGCCCTGCTTTTaGCACCTGCTGCTGTATCCC | + |
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Preference number: 2 (lower is better) Translates to: SPKTTGYYRSKFHSLSRSSAPCF*HLLLYP Trigger: GGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGA...CGACCTACTAAGAGAGTGAAACTTTGATCGATAGTAACCTGTGGTTTTAGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR-3UTR GCA 90 bp | TATCGATCAAAGTTTCACTCTCTTAGTAGGTCGCAAAACCCACACGCATCTATGCAAAGTTCTGCGCCCTaGTTTTGCCACCTGCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: YRSKFHSLSRSQNPHASMQSSAP*FCHLLL Trigger: CAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTG...CATAGATGCGTGTGGGTTTTGCGACCTACTAAGAGAGTGAAACTTTGATCGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR-3UTR GCA 90 bp | AATAAGAAAAAGAGTCAAACGGTGTCACGGATATCAAGAGCACTTTTGTGGCGTCCACTCCCAAAGTTCTaGGCCCTGCTTTTGCCACCT | + |
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Preference number: 2 (lower is better) Translates to: NKKKSQTVSRISRALLWRPLPKF*ALLLPP Trigger: AGGTGGCAAAAGCAGGGCGCAGAACTTTGGGAGTGG...ACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACTCTTTTTCTTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CAA 90 bp | AATAAGAAAAAGAGTCAAACGGTGTCACGGATATCAAGAGCACTTTaGTGGCGTAAACCGTGCAGACAGGAGCTAAGAATTCTACTCTGG | + |
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Preference number: 2 (lower is better) Translates to: NKKKSQTVSRISRAL*WRKPCRQELRILLW Trigger: CCAGAGTAGAATTCTTAGCTCCTGTCTGCACGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACTCTTTTTCTTATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 72 bp | TCGGCCTCTCAAGCTGTCCCCAGTGCTGAGCCCACCTaGAGGTGGAAAGGGGCCTTCGCCGCCTGGTTCATC | + |
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Preference number: 3 (lower is better) Translates to: SASQAVPSAEPT*RWKGAFAAWFI Trigger: GATGAACCAGGCGGCGAAGGCCCCTTTCCACCTGCAGGTGGGCTCAGCACTGGGGACAGCTTGAGAGGCCGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CCA 72 bp | GAGCCCACCTGCAGGTGGAAAGGGGCCTTCGCCGCCTaGTTCATCTCCCAGTATCCCACGCCAGCAGCCACT | + |
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Preference number: 3 (lower is better) Translates to: EPTCRWKGAFAA*FISQYPTPAAT Trigger: AGTGGCTGCTGGCGTGGGATACTGGGAGATGAACCAGGCGGCGAAGGCCCCTTTCCACCTGCAGGTGGGCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 72 bp | TGGGCCTCTGAATACACACCCATCCACACCCCGCCTTaGTCGGCCTCTCAAGCTGTCCCCAGTGCTGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: WASEYTPIHTPP*SASQAVPSAEP Trigger: GGGCTCAGCACTGGGGACAGCTTGAGAGGCCGAGCAAGGCGGGGTGTGGATGGGTGTGTATTCAGAGGCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 72 bp | TCCCACGCCAGCAGCCACTCCCAAAGTTCTGCGCCCTaGTTTTGCCACCTGCTGCTGTATCCCGAAGTCTGG | + |
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Preference number: 3 (lower is better) Translates to: SHASSHSQSSAP*FCHLLLYPEVW Trigger: CCAGACTTCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTGGGAGTGGCTGCTGGCGTGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 72 bp | CCCAGTATCCCACGCCAGCAGCCACTCCCAAAGTTCTaGGCCCTGCTTTTGCCACCTGCTGCTGTATCCCGA | + |
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Preference number: 3 (lower is better) Translates to: PSIPRQQPLPKF*ALLLPPAAVSR Trigger: TCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTGGGAGTGGCTGCTGGCGTGGGATACTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR TCA 72 bp | CGAATAAACAGTCACTTTTTCCGGTCACTGGGCCTCTaGATACACACCCATCCACACCCCGCCTTGCTCGGC | + |
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Preference number: 3 (lower is better) Translates to: RINSHFFRSLGL*IHTHPHPALLG Trigger: GCCGAGCAAGGCGGGGTGTGGATGGGTGTGTATTCAGAGGCCCAGTGACCGGAAAAAGTGACTGTTTATTCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CCA 72 bp | CGTAAACCGTGCAGACAGGAGCTAAGAATTCTACTCTaGATCTTTGTCCCGGGCGTAGCTGGAGCGCTAGCC | + |
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Preference number: 3 (lower is better) Translates to: RKPCRQELRILL*IFVPGVAGALA Trigger: GGCTAGCGCTCCAGCTACGCCCGGGACAAAGATCCAGAGTAGAATTCTTAGCTCCTGTCTGCACGGTTTACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR-3UTR CAA 90 bp | AATAAGAAAAAGAGTCAAACGGTGTCACGGATATCAAGAGCACTTTTGTGGCGTTTCTGCGCCCTGCTTTaGCCACCTGCTGCTGTATCC | + |
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Preference number: 3 (lower is better) Translates to: NKKKSQTVSRISRALLWRFCALL*PPAAVS Trigger: GGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAA...ACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACTCTTTTTCTTATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR-3UTR CAA 90 bp | TATCGATCAAAGTTTCACTCTCTTAGTAGGTCGCAAAACCCACACGCATCTATGTCCTCCTGTACAGTCTaGCTTGGGGCCTTTCGAAGA | + |
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Preference number: 3 (lower is better) Translates to: YRSKFHSLSRSQNPHASMSSCTV*LGAFRR Trigger: TCTTCGAAAGGCCCCAAGCAAGACTGTACAGGAGGA...CATAGATGCGTGTGGGTTTTGCGACCTACTAAGAGAGTGAAACTTTGATCGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CCA 72 bp | AGTCAAACGGTGTCACGGATATCAAGAGCACTTTTGTaGCGTAAACCGTGCAGACAGGAGCTAAGAATTCTA | + |
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Preference number: 3 (lower is better) Translates to: SQTVSRISRALL*RKPCRQELRIL Trigger: TAGAATTCTTAGCTCCTGTCTGCACGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR GCA 72 bp | TCACGGATATCAAGAGCACTTTTGTGGCGTAAACCGTaGAGACAGGAGCTAAGAATTCTACTCTGGATCTTT | + |
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Preference number: 3 (lower is better) Translates to: SRISRALLWRKP*RQELRILLWIF Trigger: AAAGATCCAGAGTAGAATTCTTAGCTCCTGTCTGCACGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR CCA 90 bp | CAAAGTTCTGCGCCCTGCTTTTGCCACCTGCTGCTGTATCCCGAAGTCTGGGCGGTCACCACCGACGCCTaGGTGCAGCAGCGCACCGCG | + |
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Preference number: 4 (lower is better) Translates to: QSSAPCFCHLLLYPEVWAVTTDA*VQQRTA Trigger: CGCGGTGCGCTGCTGCACCCAGGCGTCGGTGGTGAC...CGCCCAGACTTCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR GCA 90 bp | ACCTGCAGGTGGAAAGGGGCCTTCGCCGCCTGGTTCATCTCCCAGTATCCCACGGGGTCCCACGACCACTaGCTCCACCTCTTTAGACGG | + |
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Preference number: 4 (lower is better) Translates to: TCRWKGAFAAWFISQYPTGSHDH*LHLFRR Trigger: CCGTCTAAAGAGGTGGAGGCAGTGGTCGTGGGACCC...CGTGGGATACTGGGAGATGAACCAGGCGGCGAAGGCCCCTTTCCACCTGCAGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CAA 72 bp | CGCCAGCAGCCACTCCCAAAGTTCTGCGCCCTGCTTTaGCCACCTGCTGCTGTATCCCGAAGTCTGGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: RQQPLPKFCALL*PPAAVSRSLGA Trigger: AGCGCCCAGACTTCGGGATACAGCAGCAGGTGGCAAAAGCAGGGCGCAGAACTTTGGGAGTGGCTGCTGGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR GCA 90 bp | TACTATCGATCAAAGTTTCACTCTCTTAGTAGGTCGCAAAACCCACACGCATCTCCACCGACGCCTGGGTaGAGCAGCGCACCGCGCGCT | + |
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Preference number: 4 (lower is better) Translates to: YYRSKFHSLSRSQNPHASPPTPG*SSAPRA Trigger: AGCGCGCGGTGCGCTGCTGCACCCAGGCGTCGGTGG...AGATGCGTGTGGGTTTTGCGACCTACTAAGAGAGTGAAACTTTGATCGATAGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR TCA 90 bp | AAAAAGAGTCAAACGGTGTCACGGATATCAAGAGCACTTTTGTGGCGTAAACCGGCGCCTCGCTACTGTTaGCCAGGAACAGGCCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: KKSQTVSRISRALLWRKPAPRYC*PGTGQP Trigger: TGGCTGGCCTGTTCCTGGTCAACAGTAGCGAGGCGC...CGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACTCTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR TCA 90 bp | AAAACTCTAACCCGCAGGCAGGCAAACAGGCCACTAGGACACAAAAGACTTATCGCGAGAGCACACACATaGCTGCGATCTGCACCACAC | + |
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Preference number: 4 (lower is better) Translates to: KTLTRRQANRPLGHKRLIARAHT*LRSAPH Trigger: GTGTGGTGCAGATCGCAGTCATGTGTGTGCTCTCGC...GATAAGTCTTTTGTGTCCTAGTGGCCTGTTTGCCTGCCTGCGGGTTAGAGTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR GCA 90 bp | GTCAAACGGTGTCACGGATATCAAGAGCACTTTTGTGGCGTAAACCGTGCAGACGAGCACACACATGACTaGGATCTGCACCACACGCAT | + |
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Preference number: 4 (lower is better) Translates to: VKRCHGYQEHFCGVNRADEHTHD*DLHHTH Trigger: ATGCGTGTGGTGCAGATCGCAGTCATGTGTGTGCTC...GTCTGCACGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| 3UTR CAA 72 bp | AAGAGTCAAACGGTGTCACGGATATCAAGAGCACTTTaGTGGCGTAAACCGTGCAGACAGGAGCTAAGAATT | + |
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Preference number: 4 (lower is better) Translates to: KSQTVSRISRAL*WRKPCRQELRI Trigger: AATTCTTAGCTCCTGTCTGCACGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS CCA 90 bp | TCGGGGCCTCCCTCGGCGAAGCCATCGTCGGTCACCACCGACGCCTaGGTGCAGCAGCGCACCGCGCGCTCCAGCGCCTCGCTACTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SGPPSAKPSSVTTDA*VQQRTARSSASLLL Trigger: CAACAGTAGCGAGGCGCTGGAGCGCGCGGTGCGCTGCTGCACCCAGGCGTCGGTGGTGACCGACGATGGCTTCGCCGAGGGAGGCCCCGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS TCA 90 bp | CCTGGGTGCAGCAGCGCACCGCGCGCTCCAGCGCCTCGCTACTGTTaGCCAGGAACAGGCCAGCCACGTCGGTCTGGTTGCCCAGCACTG | + |
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Preference number: 5 (lower is better) Translates to: PGCSSAPRAPAPRYC*PGTGQPRRSGCPAL Trigger: CAGTGCTGGGCAACCAGACCGACGTGGCTGGCCTGTTCCTGGTCAACAGTAGCGAGGCGCTGGAGCGCGCGGTGCGCTGCTGCACCCAGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR CAA 90 bp | TGCAGGTGGAAAGGGGCCTTCGCCGCCTGGTTCATCTCCCAGTATCCCACGCCAAGCGCCTCGCTACTGTaGACCAGGAACAGGCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: CRWKGAFAAWFISQYPTPSASLL*TRNRPA Trigger: GGCTGGCCTGTTCCTGGTCAACAGTAGCGAGGCGCT...TGGCGTGGGATACTGGGAGATGAACCAGGCGGCGAAGGCCCCTTTCCACCTGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR CAA 90 bp | AAAAAGAGTCAAACGGTGTCACGGATATCAAGAGCACTTTTGTGGCGTAAACCGATCATGCCTTCGGACTaGATGAGCAGGTTGCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: KKSQTVSRISRALLWRKPIMPSD*MSRLQP Trigger: TGGCTGCAACCTGCTCATCAAGTCCGAAGGCATGAT...CGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACTCTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS-3UTR CAA 90 bp | AAAAGAGTCAAACGGTGTCACGGATATCAAGAGCACTTTTGTGGCGTAAACCGTTCCTTCACTAGGAAGTaGATCATGCCTTCGGACTTG | + |
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Preference number: 5 (lower is better) Translates to: KRVKRCHGYQEHFCGVNRSFTRK*IMPSDL Trigger: CAAGTCCGAAGGCATGATCAACTTCCTAGTGAAGGA...ACGGTTTACGCCACAAAAGTGCTCTTGATATCCGTGACACCGTTTGACTCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS CCA 72 bp | CCCTCGGCGAAGCCATCGTCGGTCACCACCGACGCCTaGGTGCAGCAGCGCACCGCGCGCTCCAGCGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: PSAKPSSVTTDA*VQQRTARSSAS Trigger: CGAGGCGCTGGAGCGCGCGGTGCGCTGCTGCACCCAGGCGTCGGTGGTGACCGACGATGGCTTCGCCGAGGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS GCA 72 bp | CGGCGAAGCCATCGTCGGTCACCACCGACGCCTGGGTaGAGCAGCGCACCGCGCGCTCCAGCGCCTCGCTAC | + |
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Preference number: 6 (lower is better) Translates to: RRSHRRSPPTPG*SSAPRAPAPRY Trigger: GTAGCGAGGCGCTGGAGCGCGCGGTGCGCTGCTGCACCCAGGCGTCGGTGGTGACCGACGATGGCTTCGCCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS CAA 90 bp | GCCTGGGTGCAGCAGCGCACCGCGCGCTCCAGCGCCTCGCTACTGTaGACCAGGAACAGGCCAGCCACGTCGGTCTGGTTGCCCAGCACT | + |
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Preference number: 6 (lower is better) Translates to: AWVQQRTARSSASLL*TRNRPATSVWLPST Trigger: AGTGCTGGGCAACCAGACCGACGTGGCTGGCCTGTTCCTGGTCAACAGTAGCGAGGCGCTGGAGCGCGCGGTGCGCTGCTGCACCCAGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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| CDS GCA 72 bp | GCCAAAAACCACAGTGAGCGAGAGCACACACATGACTaGGATCTGCACCACACGCATGATGTACAGGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: AKNHSEREHTHD*DLHHTHDVQAA Trigger: CGCAGCCTGTACATCATGCGTGTGGTGCAGATCGCAGTCATGTGTGTGCTCTCGCTCACTGTGGTTTTTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100089.3 |
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