Pregenerated sensors for RPRD1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040446Ensembl transcript IDs: ENSMUST00000046206.5
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTCATTACAAGCATATCCGAGGTCCAGTGGTTTGGGCTTCCAGTTaGGCTTCAGCGGTGTGCACAGAGAACAGCTATAGCTTCTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: AHYKHIRGPVVWASS*ASAVCTENSYSFCE Trigger: CTCACAGAAGCTATAGCTGTTCTCTGTGCACACCGCTGAAGCTCAACTGGAAGCCCAAACCACTGGACCTCGGATATGCTTGTAATGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 90 bp | TTGATCTCACTCTACAGACCAGGCTGGCCTTCACAGAGATCCTCCTaGCTCTGCCTCCCAAGTACTGAAATTAAAGGCATGAACCACCAC | + |
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Preference number: 1 (lower is better) Translates to: LISLYRPGWPSQRSS*LCLPSTEIKGMNHH Trigger: GTGGTGGTTCATGCCTTTAATTTCAGTACTTGGGAGGCAGAGGCAGGAGGATCTCTGTGAAGGCCAGCCTGGTCTGTAGAGTGAGATCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 90 bp | TTTACTTACTGTAGTATTGTAGGAGCAGAGGGAGCACCGGGAATCTaGTCAAATTGCCACTCCGACAGCTCTCTGCACTGTTTGTGGAAA | + |
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Preference number: 1 (lower is better) Translates to: FTYCSIVGAEGAPGI*SNCHSDSSLHCLWK Trigger: TTTCCACAAACAGTGCAGAGAGCTGTCGGAGTGGCAATTTGAGCAGATTCCCGGTGCTCCCTCTGCTCCTACAATACTACAGTAAGTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 90 bp | ACATCTCCCTCTGCCATCATGAAACACAAACCTGCAGCTTCACAGTaGAACTTAAGAGAAAGCTGGAGAGCATGCACCTGCTCTAACACA | + |
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Preference number: 1 (lower is better) Translates to: TSPSAIMKHKPAASQ*NLRESWRACTCSNT Trigger: TGTGTTAGAGCAGGTGCATGCTCTCCAGCTTTCTCTTAAGTTCCACTGTGAAGCTGCAGGTTTGTGTTTCATGATGGCAGAGGGAGATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 90 bp | CCTTGCTACAATGTGACATACTTTCCCTTGAGGGCCAGACCAGGTTaGTCTCATACTTGTAATTTGCCTCCGGTACATGGGAGAGAAAAT | + |
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Preference number: 1 (lower is better) Translates to: PCYNVTYFPLRARPG*SHTCNLPPVHGREN Trigger: ATTTTCTCTCCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTGGTCTGGCCCTCAAGGGAAAGTATGTCACATTGTAGCAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 90 bp | GCAGCTTCACAGTGGAACTTAAGAGAAAGCTGGAGAGCATGCACCTaGTCTAACACACCAGGTTCAAGTACAGATAAAGGTACATTTGCT | + |
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Preference number: 1 (lower is better) Translates to: AASQWNLRESWRACT*SNTPGSSTDKGTFA Trigger: AGCAAATGTACCTTTATCTGTACTTGAACCTGGTGTGTTAGAGCAGGTGCATGCTCTCCAGCTTTCTCTTAAGTTCCACTGTGAAGCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 90 bp | AAACCTGCAGCTTCACAGTGGAACTTAAGAGAAAGCTGGAGAGCATaGACCTGCTCTAACACACCAGGTTCAAGTACAGATAAAGGTACA | + |
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Preference number: 1 (lower is better) Translates to: KPAASQWNLRESWRA*TCSNTPGSSTDKGT Trigger: TGTACCTTTATCTGTACTTGAACCTGGTGTGTTAGAGCAGGTGCATGCTCTCCAGCTTTCTCTTAAGTTCCACTGTGAAGCTGCAGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 90 bp | ATGAAACACAAACCTGCAGCTTCACAGTGGAACTTAAGAGAAAGCTaGAGAGCATGCACCTGCTCTAACACACCAGGTTCAAGTACAGAT | + |
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Preference number: 1 (lower is better) Translates to: MKHKPAASQWNLRES*RACTCSNTPGSSTD Trigger: ATCTGTACTTGAACCTGGTGTGTTAGAGCAGGTGCATGCTCTCCAGCTTTCTCTTAAGTTCCACTGTGAAGCTGCAGGTTTGTGTTTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 90 bp | AGTGACAGCAGACAACATCCTCTGAACTGTGAAAATCATGAAGGGTaGATCATCGTAGTTTTTGTTAATGCTACGGGATTTCTTACAGAG | + |
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Preference number: 1 (lower is better) Translates to: SDSRQHPLNCENHEG*IIVVFVNATGFLTE Trigger: CTCTGTAAGAAATCCCGTAGCATTAACAAAAACTACGATGATCCACCCTTCATGATTTTCACAGTTCAGAGGATGTTGTCTGCTGTCACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR TCA 90 bp | AAAGAAACAGTGAAGCCATTCAGAGTAGTGAGTATAACTGGCCTGTaGAATCTAAAAGGTGTCCTACAAACTATTCACTTGGACTCCGAT | + |
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Preference number: 1 (lower is better) Translates to: KETVKPFRVVSITGL*NLKGVLQTIHLDSD Trigger: ATCGGAGTCCAAGTGAATAGTTTGTAGGACACCTTTTAGATTTCACAGGCCAGTTATACTCACTACTCTGAATGGCTTCACTGTTTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 90 bp | TTACATGAGAAATGCAAAGCAATAAAGGAGAAAAACATCTCCCTCTaGCATCATGAAACACAAACCTGCAGCTTCACAGTGGAACTTAAG | + |
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Preference number: 1 (lower is better) Translates to: LHEKCKAIKEKNISL*HHETQTCSFTVELK Trigger: CTTAAGTTCCACTGTGAAGCTGCAGGTTTGTGTTTCATGATGGCAGAGGGAGATGTTTTTCTCCTTTATTGCTTTGCATTTCTCATGTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 90 bp | GTTTTGGAGAAAGGCCAGTGTTTAAAGCACTGTTCCCAAATCTACTaGCTATTAAAGAAAATTACCTGTCATTTCTTCACATGGAAATTC | + |
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Preference number: 1 (lower is better) Translates to: VLEKGQCLKHCSQIY*LLKKITCHFFTWKF Trigger: GAATTTCCATGTGAAGAAATGACAGGTAATTTTCTTTAATAGCCAGTAGATTTGGGAACAGTGCTTTAAACACTGGCCTTTCTCCAAAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 90 bp | AGCCACCCCAGTGTGAAGGTCTGGCTGCTGCACACAAACCCTTATTaGACAGACAAACGCTGCTCAGGATGTGCGAGAGCCACTTGTCAG | + |
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Preference number: 2 (lower is better) Translates to: SHPSVKVWLLHTNPY*TDKRCSGCARATCQ Trigger: CTGACAAGTGGCTCTCGCACATCCTGAGCAGCGTTTGTCTGTCAAATAAGGGTTTGTGTGCAGCAGCCAGACCTTCACACTGGGGTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR GCA 90 bp | GTCCAGTGGTTTGGGCTTCCAGTTGAGCTTCAGCGGTGTGCACAGAGAACAGCTGAAAGCTGGAGAGCATaGACCTGCTCTAACACACCA | + |
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Preference number: 2 (lower is better) Translates to: VQWFGLPVELQRCAQRTAESWRA*TCSNTP Trigger: TGGTGTGTTAGAGCAGGTGCATGCTCTCCAGCTTTC...AGCTGTTCTCTGTGCACACCGCTGAAGCTCAACTGGAAGCCCAAACCACTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 90 bp | GAGCCACTTGTCAGCTCATTACAAGCATATCCGAGGTCCAGTGGTTaGGGCTTCCAGTTGAGCTTCAGCGGTGTGCACAGAGAACAGCTA | + |
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Preference number: 2 (lower is better) Translates to: EPLVSSLQAYPRSSG*GFQLSFSGVHREQL Trigger: TAGCTGTTCTCTGTGCACACCGCTGAAGCTCAACTGGAAGCCCAAACCACTGGACCTCGGATATGCTTGTAATGAGCTGACAAGTGGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR GCA 90 bp | ACTAATGGCATTGATCTCACTCTACAGACCAGGCTGGCCTTCACAGAGATCCTCACGCTGCTCAGGATGTaGGAGAGCCACTTGTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: TNGIDLTLQTRLAFTEILTLLRM*ESHLSA Trigger: AGCTGACAAGTGGCTCTCGCACATCCTGAGCAGCGT...GAGGATCTCTGTGAAGGCCAGCCTGGTCTGTAGAGTGAGATCAATGCCATTAGT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR TCA 90 bp | GTGCTCTTGACACGGCAGACTAGATGGCAACAGATGCTGTGTATACACAAATCCGTTTGGGCTTCCAGTTaGGCTTCAGCGGTGTGCACA | + |
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Preference number: 2 (lower is better) Translates to: VLLTRQTRWQQMLCIHKSVWASS*ASAVCT Trigger: TGTGCACACCGCTGAAGCTCAACTGGAAGCCCAAAC...GGATTTGTGTATACACAGCATCTGTTGCCATCTAGTCTGCCGTGTCAAGAGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR GCA 90 bp | TCATTTACTTACTGTAGTATTGTAGGAGCAGAGGGAGCACCGGGAATCTGCTCAACCTGTCTCCATGTCTaGCAAAGTCCTGGCCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: SFTYCSIVGAEGAPGICSTCLHV*QSPGPG Trigger: TCCAGGGCCAGGACTTTGGCAGACATGGAGACAGGT...TGAGCAGATTCCCGGTGCTCCCTCTGCTCCTACAATACTACAGTAAGTAAATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR GCA 90 bp | CAGTGTGAAGGTCTGGCTGCTGCACACAAACCCTTATTTGACAGACAAACGCTGTGGAGAGCATGCACCTaGTCTAACACACCAGGTTCA | + |
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Preference number: 2 (lower is better) Translates to: QCEGLAAAHKPLFDRQTLWRACT*SNTPGS Trigger: TGAACCTGGTGTGTTAGAGCAGGTGCATGCTCTCCA...CAGCGTTTGTCTGTCAAATAAGGGTTTGTGTGCAGCAGCCAGACCTTCACACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CCA 90 bp | TCATTTACTTACTGTAGTATTGTAGGAGCAGAGGGAGCACCGGGAATCTGCTCAACAGAAGCAGTCAGCTaGAGAGCTGGAGTTGTGCTC | + |
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Preference number: 2 (lower is better) Translates to: SFTYCSIVGAEGAPGICSTEAVS*RAGVVL Trigger: GAGCACAACTCCAGCTCTCCAGCTGACTGCTTCTGT...TGAGCAGATTCCCGGTGCTCCCTCTGCTCCTACAATACTACAGTAAGTAAATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CCA 90 bp | GCTACTCACAGCAGTGACAGCAGACAACATCCTCTGAACTGTGAAAATCATGAACTCTACAGACCAGGCTaGCCTTCACAGAGATCCTCC | + |
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Preference number: 2 (lower is better) Translates to: ATHSSDSRQHPLNCENHELYRPG*PSQRSS Trigger: GGAGGATCTCTGTGAAGGCCAGCCTGGTCTGTAGAG...TTCATGATTTTCACAGTTCAGAGGATGTTGTCTGCTGTCACTGCTGTGAGTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CCA 90 bp | ACTAATGGCATTGATCTCACTCTACAGACCAGGCTGGCCTTCACAGAGATCCTCAACTTAAGAGAAAGCTaGAGAGCATGCACCTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: TNGIDLTLQTRLAFTEILNLRES*RACTCS Trigger: AGAGCAGGTGCATGCTCTCCAGCTTTCTCTTAAGTT...GAGGATCTCTGTGAAGGCCAGCCTGGTCTGTAGAGTGAGATCAATGCCATTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR TCA 90 bp | CAGGTTGCTCTCATACTTGTAATTTGCCTCCGGTACATGGGAGAGAAAATGTGCTCTCACATCAGCTCCTaGTCAGTTCTTCCCATTAGG | + |
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Preference number: 2 (lower is better) Translates to: QVALILVICLRYMGEKMCSHISS*SVLPIR Trigger: CCTAATGGGAAGAACTGATCAGGAGCTGATGTGAGA...GCACATTTTCTCTCCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR TCA 90 bp | CAGTGTGAAGGTCTGGCTGCTGCACACAAACCCTTATTTGACAGACAAACGCTGTCCTGGGATGGCATTTaGGATGGAACTACTATAGTA | + |
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Preference number: 2 (lower is better) Translates to: QCEGLAAAHKPLFDRQTLSWDGI*DGTTIV Trigger: TACTATAGTAGTTCCATCTCAAATGCCATCCCAGGA...CAGCGTTTGTCTGTCAAATAAGGGTTTGTGTGCAGCAGCCAGACCTTCACACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR GCA 90 bp | CAGGTTGCTCTCATACTTGTAATTTGCCTCCGGTACATGGGAGAGAAAATGTGCAGATCCTCCTGCCTCTaGCTCCCAAGTACTGAAATT | + |
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Preference number: 2 (lower is better) Translates to: QVALILVICLRYMGEKMCRSSCL*LPSTEI Trigger: AATTTCAGTACTTGGGAGGCAGAGGCAGGAGGATCT...GCACATTTTCTCTCCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CCA 90 bp | TCATTTACTTACTGTAGTATTGTAGGAGCAGAGGGAGCACCGGGAATCTGCTCACCTTCGATCCTGGGATaGCATTTGAGATGGAACTAC | + |
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Preference number: 2 (lower is better) Translates to: SFTYCSIVGAEGAPGICSPSILG*HLRWNY Trigger: GTAGTTCCATCTCAAATGCCATCCCAGGATCGAAGG...TGAGCAGATTCCCGGTGCTCCCTCTGCTCCTACAATACTACAGTAAGTAAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CCA 90 bp | ACTAATGGCATTGATCTCACTCTACAGACCAGGCTGGCCTTCACAGAGATCCTCTTTACACCCCACAGCTaGTGTTTTGTTAAAGGGATC | + |
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Preference number: 2 (lower is better) Translates to: TNGIDLTLQTRLAFTEILFTPHS*CFVKGI Trigger: GATCCCTTTAACAAAACACCAGCTGTGGGGTGTAAA...GAGGATCTCTGTGAAGGCCAGCCTGGTCTGTAGAGTGAGATCAATGCCATTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 90 bp | TACTTTCCCTTGAGGGCCAGACCAGGTTGCTCTCATACTTGTAATTaGCCTCCGGTACATGGGAGAGAAAATGTGCATGATTTACAGCTT | + |
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Preference number: 2 (lower is better) Translates to: YFPLRARPGCSHTCN*PPVHGRENVHDLQL Trigger: AAGCTGTAAATCATGCACATTTTCTCTCCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTGGTCTGGCCCTCAAGGGAAAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR TCA 90 bp | GTGCTCTTGACACGGCAGACTAGATGGCAACAGATGCTGTGTATACACAAATCCGTGCATCTCCTTTGCTaGCTCTTTCTTAGATCACTA | + |
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Preference number: 2 (lower is better) Translates to: VLLTRQTRWQQMLCIHKSVHLLC*LFLRSL Trigger: TAGTGATCTAAGAAAGAGTCAGCAAAGGAGATGCAC...GGATTTGTGTATACACAGCATCTGTTGCCATCTAGTCTGCCGTGTCAAGAGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CCA 90 bp | GCTACTCACAGCAGTGACAGCAGACAACATCCTCTGAACTGTGAAAATCATGAACCTGCAGCTTCACAGTaGAACTTAAGAGAAAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: ATHSSDSRQHPLNCENHEPAASQ*NLRESW Trigger: CCAGCTTTCTCTTAAGTTCCACTGTGAAGCTGCAGG...TTCATGATTTTCACAGTTCAGAGGATGTTGTCTGCTGTCACTGCTGTGAGTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CCA 90 bp | GTGCTCTTGACACGGCAGACTAGATGGCAACAGATGCTGTGTATACACAAATCCGGATGGCATTTGAGATaGAACTACTATAGTACTACC | + |
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Preference number: 2 (lower is better) Translates to: VLLTRQTRWQQMLCIHKSGWHLR*NYYSTT Trigger: GGTAGTACTATAGTAGTTCCATCTCAAATGCCATCC...GGATTTGTGTATACACAGCATCTGTTGCCATCTAGTCTGCCGTGTCAAGAGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 90 bp | AACAGCTATAGCTTCTGTGAGGAAATGTGTCCTAATTCCCAAAAGTaGTCATTGGAAGATAGAACATTCATGGGACGGGGTGATGCCATA | + |
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Preference number: 2 (lower is better) Translates to: NSYSFCEEMCPNSQK*SLEDRTFMGRGDAI Trigger: TATGGCATCACCCCGTCCCATGAATGTTCTATCTTCCAATGACAACTTTTGGGAATTAGGACACATTTCCTCACAGAAGCTATAGCTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 90 bp | TATAGCTTCTGTGAGGAAATGTGTCCTAATTCCCAAAAGTTGTCATaGGAAGATAGAACATTCATGGGACGGGGTGATGCCATACATGTA | + |
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Preference number: 2 (lower is better) Translates to: YSFCEEMCPNSQKLS*EDRTFMGRGDAIHV Trigger: TACATGTATGGCATCACCCCGTCCCATGAATGTTCTATCTTCCAATGACAACTTTTGGGAATTAGGACACATTTCCTCACAGAAGCTATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTTCTGTACAGAGAAGAACTGAATTCACACCGTCAAAAGCTTTTTCTAGCCTGAAATTAAAGGCATaGACCACCACACCTGGTTTA | + |
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Preference number: 2 (lower is better) Translates to: FPSVQRRTEFTPSKAFSSLKLKA*TTTPGL Trigger: TAAACCAGGTGTGGTGGTTCATGCCTTTAATTTCAG...GCTAGAAAAAGCTTTTGACGGTGTGAATTCAGTTCTTCTCTGTACAGAAGGGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTTCTGTACAGAGAAGAACTGAATTCACACCGTCAAAAGCTTTTTCTAGCTGGACTCCGATTACATaGGAAATGCAAAGCAATAAA | + |
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Preference number: 2 (lower is better) Translates to: FPSVQRRTEFTPSKAFSSWTPIT*EMQSNK Trigger: TTTATTGCTTTGCATTTCTCATGTAATCGGAGTCCA...GCTAGAAAAAGCTTTTGACGGTGTGAATTCAGTTCTTCTCTGTACAGAAGGGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 72 bp | GTAGGAGCAGAGGGAGCACCGGGAATCTGCTCAAATTaGCACTCCGACAGCTCTCTGCACTGTTTGTGGAAA | + |
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Preference number: 3 (lower is better) Translates to: VGAEGAPGICSN*HSDSSLHCLWK Trigger: TTTCCACAAACAGTGCAGAGAGCTGTCGGAGTGGCAATTTGAGCAGATTCCCGGTGCTCCCTCTGCTCCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR TCA 72 bp | AAGCATATCCGAGGTCCAGTGGTTTGGGCTTCCAGTTaGGCTTCAGCGGTGTGCACAGAGAACAGCTATAGC | + |
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Preference number: 3 (lower is better) Translates to: KHIRGPVVWASS*ASAVCTENSYS Trigger: GCTATAGCTGTTCTCTGTGCACACCGCTGAAGCTCAACTGGAAGCCCAAACCACTGGACCTCGGATATGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR TCA 72 bp | CCAGTCACTGTCCTCTCCAGACTCCAGACCAGTTCATaGACCACACACCACAAAGCTACTCACAGCAGTGAC | + |
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Preference number: 3 (lower is better) Translates to: PVTVLSRLQTSS*TTHHKATHSSD Trigger: GTCACTGCTGTGAGTAGCTTTGTGGTGTGTGGTTCATGAACTGGTCTGGAGTCTGGAGAGGACAGTGACTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 72 bp | TGTAGTATTGTAGGAGCAGAGGGAGCACCGGGAATCTaGTCAAATTGCCACTCCGACAGCTCTCTGCACTGT | + |
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Preference number: 3 (lower is better) Translates to: CSIVGAEGAPGI*SNCHSDSSLHC Trigger: ACAGTGCAGAGAGCTGTCGGAGTGGCAATTTGAGCAGATTCCCGGTGCTCCCTCTGCTCCTACAATACTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 72 bp | AGCTACGTTTACATGACATGGGCAGGGATTAAGCACTaGGACTGTGTCGCTGCCTGGTGTTCCCTTTACACC | + |
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Preference number: 3 (lower is better) Translates to: SYVYMTWAGIKH*DCVAAWCSLYT Trigger: GGTGTAAAGGGAACACCAGGCAGCGACACAGTCCCAGTGCTTAATCCCTGCCCATGTCATGTAAACGTAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 72 bp | GATAGCAGCACTGGCAGCCACCCCAGTGTGAAGGTCTaGCTGCTGCACACAAACCCTTATTTGACAGACAAA | + |
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Preference number: 3 (lower is better) Translates to: DSSTGSHPSVKV*LLHTNPYLTDK Trigger: TTTGTCTGTCAAATAAGGGTTTGTGTGCAGCAGCCAGACCTTCACACTGGGGTGGCTGCCAGTGCTGCTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR TCA 72 bp | GTTGTTGAGCTGCTCAGGCTAAGAGCTACGTTTACATaGCATGGGCAGGGATTAAGCACTGGGACTGTGTCG | + |
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Preference number: 3 (lower is better) Translates to: VVELLRLRATFT*HGQGLSTGTVS Trigger: CGACACAGTCCCAGTGCTTAATCCCTGCCCATGTCATGTAAACGTAGCTCTTAGCCTGAGCAGCTCAACAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 72 bp | AATGTGACATACTTTCCCTTGAGGGCCAGACCAGGTTaGTCTCATACTTGTAATTTGCCTCCGGTACATGGG | + |
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Preference number: 3 (lower is better) Translates to: NVTYFPLRARPG*SHTCNLPPVHG Trigger: CCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTGGTCTGGCCCTCAAGGGAAAGTATGTCACATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 72 bp | TCTGATGTAAGAAGACTGACGACAGAAGCAGTCAGCTaGAGAGCTGGAGTTGTGCTCATTAGGACAGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: SDVRRLTTEAVS*RAGVVLIRTAE Trigger: TTCTGCTGTCCTAATGAGCACAACTCCAGCTCTCCAGCTGACTGCTTCTGTCGTCAGTCTTCTTACATCAGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 72 bp | GCTTCACAGTGGAACTTAAGAGAAAGCTGGAGAGCATaGACCTGCTCTAACACACCAGGTTCAAGTACAGAT | + |
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Preference number: 3 (lower is better) Translates to: ASQWNLRESWRA*TCSNTPGSSTD Trigger: ATCTGTACTTGAACCTGGTGTGTTAGAGCAGGTGCATGCTCTCCAGCTTTCTCTTAAGTTCCACTGTGAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 72 bp | AAAAGAGGAATGGTGTCCATTCACAGCACAGGACCTTaGTACAATGTGACATACTTTCCCTTGAGGGCCAGA | + |
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Preference number: 3 (lower is better) Translates to: KRGMVSIHSTGP*YNVTYFPLRAR Trigger: TCTGGCCCTCAAGGGAAAGTATGTCACATTGTAGCAAGGTCCTGTGCTGTGAATGGACACCATTCCTCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CAA 90 bp | GCTACTCACAGCAGTGACAGCAGACAACATCCTCTGAACTGTGAAAATCATGAAACACAGAACCAGTATTaGGGTGGCAAGAGTAAGGTG | + |
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Preference number: 3 (lower is better) Translates to: ATHSSDSRQHPLNCENHETQNQY*GGKSKV Trigger: CACCTTACTCTTGCCACCCAAATACTGGTTCTGTGT...TTCATGATTTTCACAGTTCAGAGGATGTTGTCTGCTGTCACTGCTGTGAGTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CAA 90 bp | GTGCTCTTGACACGGCAGACTAGATGGCAACAGATGCTGTGTATACACAAATCCATCCTGGGATGGCATTaGAGATGGAACTACTATAGT | + |
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Preference number: 3 (lower is better) Translates to: VLLTRQTRWQQMLCIHKSILGWH*RWNYYS Trigger: ACTATAGTAGTTCCATCTCAAATGCCATCCCAGGAT...GGATTTGTGTATACACAGCATCTGTTGCCATCTAGTCTGCCGTGTCAAGAGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR TCA 72 bp | TATAGTACTACCGGGGAACCTTCTCTAGGCTTTATTTaGCCCTGCACGGCATCCATGTCTAGTGTTAAACTC | + |
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Preference number: 3 (lower is better) Translates to: YSTTGEPSLGFI*PCTASMSSVKL Trigger: GAGTTTAACACTAGACATGGATGCCGTGCAGGGTCAAATAAAGCCTAGAGAAGGTTCCCCGGTAGTACTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 72 bp | GTTAACAGACCTTCGATCCTGGGATGGCATTTGAGATaGAACTACTATAGTACTACCGGGGAACCTTCTCTA | + |
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Preference number: 3 (lower is better) Translates to: VNRPSILGWHLR*NYYSTTGEPSL Trigger: TAGAGAAGGTTCCCCGGTAGTACTATAGTAGTTCCATCTCAAATGCCATCCCAGGATCGAAGGTCTGTTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR TCA 72 bp | GGCATAATCAGGGTATGTAATGTGCATCTCCTTTGCTaGCTCTTTCTTAGATCACTACCCCTAAGGAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: GIIRVCNVHLLC*LFLRSLPLRKG Trigger: TCCTTTCCTTAGGGGTAGTGATCTAAGAAAGAGTCAGCAAAGGAGATGCACATTACATACCCTGATTATGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CAA 90 bp | TCATTTACTTACTGTAGTATTGTAGGAGCAGAGGGAGCACCGGGAATCTGCTCACAGATAAAGGTACATTaGCTGTGTATTTACACCTGT | + |
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Preference number: 3 (lower is better) Translates to: SFTYCSIVGAEGAPGICSQIKVH*LCIYTC Trigger: ACAGGTGTAAATACACAGCAAATGTACCTTTATCTG...TGAGCAGATTCCCGGTGCTCCCTCTGCTCCTACAATACTACAGTAAGTAAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR GCA 72 bp | AAATGCAAAGCAATAAAGGAGAAAAACATCTCCCTCTaGCATCATGAAACACAAACCTGCAGCTTCACAGTG | + |
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Preference number: 3 (lower is better) Translates to: KCKAIKEKNISL*HHETQTCSFTV Trigger: CACTGTGAAGCTGCAGGTTTGTGTTTCATGATGGCAGAGGGAGATGTTTTTCTCCTTTATTGCTTTGCATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CAA 90 bp | AGAAACAGTGAAGCCATTCAGAGTAGTGAGTATAACTGGCCTGTGAAATCTAAACCCACAGCTGGTGTTTaGTTAAAGGGATCTGATGTA | + |
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Preference number: 3 (lower is better) Translates to: RNSEAIQSSEYNWPVKSKPTAGV*LKGSDV Trigger: TACATCAGATCCCTTTAACAAAACACCAGCTGTGGG...TTTAGATTTCACAGGCCAGTTATACTCACTACTCTGAATGGCTTCACTGTTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR-3UTR CAA 90 bp | GCTACTCACAGCAGTGACAGCAGACAACATCCTCTGAACTGTGAAAATCATGAACCTAATTCCCAAAAGTaGTCATTGGAAGATAGAACA | + |
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Preference number: 3 (lower is better) Translates to: ATHSSDSRQHPLNCENHEPNSQK*SLEDRT Trigger: TGTTCTATCTTCCAATGACAACTTTTGGGAATTAGG...TTCATGATTTTCACAGTTCAGAGGATGTTGTCTGCTGTCACTGCTGTGAGTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR TCA 72 bp | GTGAAGCCATTCAGAGTAGTGAGTATAACTGGCCTGTaGAATCTAAAAGGTGTCCTACAAACTATTCACTTG | + |
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Preference number: 3 (lower is better) Translates to: VKPFRVVSITGL*NLKGVLQTIHL Trigger: CAAGTGAATAGTTTGTAGGACACCTTTTAGATTTCACAGGCCAGTTATACTCACTACTCTGAATGGCTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CCA 72 bp | AGACAACATCCTCTGAACTGTGAAAATCATGAAGGGTaGATCATCGTAGTTTTTGTTAATGCTACGGGATTT | + |
|
Preference number: 3 (lower is better) Translates to: RQHPLNCENHEG*IIVVFVNATGF Trigger: AAATCCCGTAGCATTAACAAAAACTACGATGATCCACCCTTCATGATTTTCACAGTTCAGAGGATGTTGTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 72 bp | TGTAGGAGCAGAGGGAGCACCGGGAATCTGCTCAAATaGCCACTCCGACAGCTCTCTGCACTGTTTGTGGAA | + |
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Preference number: 4 (lower is better) Translates to: CRSRGSTGNLLK*PLRQLSALFVE Trigger: TTCCACAAACAGTGCAGAGAGCTGTCGGAGTGGCAATTTGAGCAGATTCCCGGTGCTCCCTCTGCTCCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CCA 90 bp | AGGACCTTGCTACAATGTGACATACTTTCCCTTGAGGGCCAGACCAGGTTGCTCGCTTCCTGTTGGGTTTaGCTTTGCGTAGCTCCCGTT | + |
|
Preference number: 4 (lower is better) Translates to: RTLLQCDILSLEGQTRLLASCWV*LCVAPV Trigger: AACGGGAGCTACGCAAAGCCAAACCCAACAGGAAGC...GAGCAACCTGGTCTGGCCCTCAAGGGAAAGTATGTCACATTGTAGCAAGGTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR TCA 90 bp | GTCCAGTGGTTTGGGCTTCCAGTTGAGCTTCAGCGGTGTGCACAGAGAACAGCTCATACAGCGCGTGCTTaGGTTGCTCTAATACATCAT | + |
|
Preference number: 4 (lower is better) Translates to: VQWFGLPVELQRCAQRTAHTARA*VALIHH Trigger: ATGATGTATTAGAGCAACTCAAGCACGCGCTGTATG...AGCTGTTCTCTGTGCACACCGCTGAAGCTCAACTGGAAGCCCAAACCACTGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR TCA 90 bp | AGGACCTTGCTACAATGTGACATACTTTCCCTTGAGGGCCAGACCAGGTTGCTCGCATGTGACTGCCAGTaGCATTGGGCAAACGAGATA | + |
|
Preference number: 4 (lower is better) Translates to: RTLLQCDILSLEGQTRLLACDCQ*HWANEI Trigger: TATCTCGTTTGCCCAATGTCACTGGCAGTCACATGC...GAGCAACCTGGTCTGGCCCTCAAGGGAAAGTATGTCACATTGTAGCAAGGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CCA 90 bp | AGACCTTCGATCCTGGGATGGCATTTGAGATGGAACTACTATAGTACTACCGGGGAGTGTTTGCGATGGTaGATGAGCCACAGGGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: RPSILGWHLRWNYYSTTGECLRW*MSHRDR Trigger: CCTGTCCCTGTGGCTCATCCACCATCGCAAACACTC...CCCGGTAGTACTATAGTAGTTCCATCTCAAATGCCATCCCAGGATCGAAGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CCA 90 bp | AGGACCTTGCTACAATGTGACATACTTTCCCTTGAGGGCCAGACCAGGTTGCTCAAATCTGGCAGGCTCTaGATCCGGGCTCTTAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RTLLQCDILSLEGQTRLLKSGRL*IRALSS Trigger: AGAACTAAGAGCCCGGATCCAGAGCCTGCCAGATTT...GAGCAACCTGGTCTGGCCCTCAAGGGAAAGTATGTCACATTGTAGCAAGGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR GCA 90 bp | AGGACCTTGCTACAATGTGACATACTTTCCCTTGAGGGCCAGACCAGGTTGCTCTTTCTGCCGCCAGTCTaGCATTATAATCTGCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RTLLQCDILSLEGQTRLLFLPPV*HYNLPA Trigger: TGCTGGCAGATTATAATGGCAGACTGGCGGCAGAAA...GAGCAACCTGGTCTGGCCCTCAAGGGAAAGTATGTCACATTGTAGCAAGGTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR GCA 90 bp | GCTACTCACAGCAGTGACAGCAGACAACATCCTCTGAACTGTGAAAATCATGAACGCTCTGCTGCGAGTTaGTCAACTCGGACAGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: ATHSSDSRQHPLNCENHERSAAS*STRTAS Trigger: AGAAGCTGTCCGAGTTGAGCAACTCGCAGCAGAGCG...TTCATGATTTTCACAGTTCAGAGGATGTTGTCTGCTGTCACTGCTGTGAGTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR GCA 90 bp | CAGGTTGCTCTCATACTTGTAATTTGCCTCCGGTACATGGGAGAGAAAATGTGCGGGCTCTTAGTTCTTTaGGTACCAGGGAAACTCGGG | + |
|
Preference number: 4 (lower is better) Translates to: QVALILVICLRYMGEKMCGLLVL*VPGKLG Trigger: CCCGAGTTTCCCTGGTACGCAAAGAACTAAGAGCCC...GCACATTTTCTCTCCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 72 bp | TGCCTGGTGTTCCCTTTACACCCCACAGCTGGTGTTTaGTTAAAGGGATCTGATGTAAGAAGACTGACGACA | + |
|
Preference number: 4 (lower is better) Translates to: CLVFPLHPTAGV*LKGSDVRRLTT Trigger: TGTCGTCAGTCTTCTTACATCAGATCCCTTTAACAAAACACCAGCTGTGGGGTGTAAAGGGAACACCAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 72 bp | TTGAGGGCCAGACCAGGTTGCTCTCATACTTGTAATTaGCCTCCGGTACATGGGAGAGAAAATGTGCATGAT | + |
|
Preference number: 4 (lower is better) Translates to: LRARPGCSHTCN*PPVHGRENVHD Trigger: ATCATGCACATTTTCTCTCCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTGGTCTGGCCCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 72 bp | AGCACAGGACCTTGCTACAATGTGACATACTTTCCCTaGAGGGCCAGACCAGGTTGCTCTCATACTTGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: STGPCYNVTYFP*RARPGCSHTCN Trigger: ATTACAAGTATGAGAGCAACCTGGTCTGGCCCTCAAGGGAAAGTATGTCACATTGTAGCAAGGTCCTGTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 72 bp | TGTGAGGAAATGTGTCCTAATTCCCAAAAGTTGTCATaGGAAGATAGAACATTCATGGGACGGGGTGATGCC | + |
|
Preference number: 4 (lower is better) Translates to: CEEMCPNSQKLS*EDRTFMGRGDA Trigger: GGCATCACCCCGTCCCATGAATGTTCTATCTTCCAATGACAACTTTTGGGAATTAGGACACATTTCCTCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR TCA 90 bp | AGAAACAGTGAAGCCATTCAGAGTAGTGAGTATAACTGGCCTGTGAAATCTAAAAAAGACGCTATCCTTTaGTGGACTGCTGCGTCACCT | + |
|
Preference number: 4 (lower is better) Translates to: RNSEAIQSSEYNWPVKSKKDAIL*WTAASP Trigger: AGGTGACGCAGCAGTCCATCAAAGGATAGCGTCTTT...TTTAGATTTCACAGGCCAGTTATACTCACTACTCTGAATGGCTTCACTGTTTCT 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR GCA 90 bp | CAGGTTGCTCTCATACTTGTAATTTGCCTCCGGTACATGGGAGAGAAAATGTGCAACACTCTTCCAAGGTaGTTCTTACAGCTTTCATCA | + |
|
Preference number: 4 (lower is better) Translates to: QVALILVICLRYMGEKMCNTLPR*FLQLSS Trigger: TGATGAAAGCTGTAAGAAGCACCTTGGAAGAGTGTT...GCACATTTTCTCTCCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR GCA 90 bp | GCACCTGCTCTAACACACCAGGTTCAAGTACAGATAAAGGTACATTTGCTGTGTAAACTCGGGCTAACTTaGGCTTGTATTCTTCCAATT | + |
|
Preference number: 4 (lower is better) Translates to: APALTHQVQVQIKVHLLCKLGLT*ACILPI Trigger: AATTGGAAGAATACAAGCGCAAGTTAGCCCGAGTTT...ACACAGCAAATGTACCTTTATCTGTACTTGAACCTGGTGTGTTAGAGCAGGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CCA 90 bp | CAGGTTGCTCTCATACTTGTAATTTGCCTCCGGTACATGGGAGAGAAAATGTGCTGCCTCCACTATTACTaGTGCAAAATCTTTTGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: QVALILVICLRYMGEKMCCLHYY*CKIFCE Trigger: TTCACAAAAGATTTTGCACCAGTAATAGTGGAGGCA...GCACATTTTCTCTCCCATGTACCGGAGGCAAATTACAAGTATGAGAGCAACCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 72 bp | TTTATAAAAGATGGAGTATCCTTTTTCCATGTGCTCTaGACACGGCAGACTAGATGGCAACAGATGCTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: FIKDGVSFFHVL*TRQTRWQQMLC Trigger: ACACAGCATCTGTTGCCATCTAGTCTGCCGTGTCAAGAGCACATGGAAAAAGGATACTCCATCTTTTATAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR GCA 90 bp | TGTTCCCTTCTGTACAGAGAAGAACTGAATTCACACCGTCAAAAGCTTTTTCTAAGCGCGTGCTTGAGTTaGTCTAATACATCATTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: CSLLYREELNSHRQKLFLSACLS*SNTSFS Trigger: TGAAAATGATGTATTAGAGCAACTCAAGCACGCGCT...TAGAAAAAGCTTTTGACGGTGTGAATTCAGTTCTTCTCTGTACAGAAGGGAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR GCA 90 bp | TGTTCCCTTCTGTACAGAGAAGAACTGAATTCACACCGTCAAAAGCTTTTTCTACTCCACTATTACTGGTaGAAAATCTTTTGTGAACTC | + |
|
Preference number: 4 (lower is better) Translates to: CSLLYREELNSHRQKLFLLHYYW*KIFCEL Trigger: GAGTTCACAAAAGATTTTGCACCAGTAATAGTGGAG...TAGAAAAAGCTTTTGACGGTGTGAATTCAGTTCTTCTCTGTACAGAAGGGAACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| 3UTR CAA 72 bp | CTAACACACCAGGTTCAAGTACAGATAAAGGTACATTaGCTGTGTATTTACACCTGTAAACAGACAAATATA | + |
|
Preference number: 4 (lower is better) Translates to: LTHQVQVQIKVH*LCIYTCKQTNI Trigger: TATATTTGTCTGTTTACAGGTGTAAATACACAGCAAATGTACCTTTATCTGTACTTGAACCTGGTGTGTTAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CAA 90 bp | GTGCTCTTGACACGGCAGACTAGATGGCAACAGATGCTGTGTATACACAAATCCATGGGCCGCGAGTGTTaGCGATGGTGGATGAGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: VLLTRQTRWQQMLCIHKSMGREC*RWWMSH Trigger: GTGGCTCATCCACCATCGCAAACACTCGCGGCCCAT...GGATTTGTGTATACACAGCATCTGTTGCCATCTAGTCTGCCGTGTCAAGAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CAA 90 bp | GTCCAGTGGTTTGGGCTTCCAGTTGAGCTTCAGCGGTGTGCACAGAGAACAGCTCTCATCCACCTTTATTaGCTCATAAGTCCTCTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: VQWFGLPVELQRCAQRTALIHLY*LISPLP Trigger: AGGAAGAGGACTTATGAGCAAATAAAGGTGGATGAG...AGCTGTTCTCTGTGCACACCGCTGAAGCTCAACTGGAAGCCCAAACCACTGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CAA 90 bp | GCACCTGCTCTAACACACCAGGTTCAAGTACAGATAAAGGTACATTTGCTGTGTCGGGCTCTTAGTTCTTaGCGTACCAGGGAAACTCGG | + |
|
Preference number: 5 (lower is better) Translates to: APALTHQVQVQIKVHLLCRALSS*RTRETR Trigger: CCGAGTTTCCCTGGTACGCAAAGAACTAAGAGCCCG...ACACAGCAAATGTACCTTTATCTGTACTTGAACCTGGTGTGTTAGAGCAGGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CAA 90 bp | AGACCTTCGATCCTGGGATGGCATTTGAGATGGAACTACTATAGTACTACCGGGAAAGTAAGCTTCCTGTaGGGTTTGGCTTTGCGTAGC | + |
|
Preference number: 5 (lower is better) Translates to: RPSILGWHLRWNYYSTTGKVSFL*GLALRS Trigger: GCTACGCAAAGCCAAACCCAACAGGAAGCTTACTTT...CCCGGTAGTACTATAGTAGTTCCATCTCAAATGCCATCCCAGGATCGAAGGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CAA 90 bp | ACTAATGGCATTGATCTCACTCTACAGACCAGGCTGGCCTTCACAGAGATCCTCCGGGCTAACTTGCGCTaGTATTCTTCCAATTTATGT | + |
|
Preference number: 5 (lower is better) Translates to: TNGIDLTLQTRLAFTEILRANLR*YSSNLC Trigger: ACATAAATTGGAAGAATACAAGCGCAAGTTAGCCCG...GAGGATCTCTGTGAAGGCCAGCCTGGTCTGTAGAGTGAGATCAATGCCATTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CAA 90 bp | TCATTTACTTACTGTAGTATTGTAGGAGCAGAGGGAGCACCGGGAATCTGCTCACATAAGTCCTCTTCCTaGCCTTCTTATCTCCATACA | + |
|
Preference number: 5 (lower is better) Translates to: SFTYCSIVGAEGAPGICSHKSSS*PSYLHT Trigger: TGTATGGAGATAAGAAGGCAAGGAAGAGGACTTATG...TGAGCAGATTCCCGGTGCTCCCTCTGCTCCTACAATACTACAGTAAGTAAATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CAA 90 bp | GCTACTCACAGCAGTGACAGCAGACAACATCCTCTGAACTGTGAAAATCATGAAGAAACTCGGGCTAACTaGCGCTTGTATTCTTCCAAT | + |
|
Preference number: 5 (lower is better) Translates to: ATHSSDSRQHPLNCENHEETRAN*RLYSSN Trigger: ATTGGAAGAATACAAGCGCAAGTTAGCCCGAGTTTC...TTCATGATTTTCACAGTTCAGAGGATGTTGTCTGCTGTCACTGCTGTGAGTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS-3UTR CAA 90 bp | GCACCTGCTCTAACACACCAGGTTCAAGTACAGATAAAGGTACATTTGCTGTGTCTCTCTCCAGATTCTTaGTCTGTTATCTTCTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: APALTHQVQVQIKVHLLCLSPDS*SVIFSS Trigger: GCTTGAGAAGATAACAGACAAAGAATCTGGAGAGAG...ACACAGCAAATGTACCTTTATCTGTACTTGAACCTGGTGTGTTAGAGCAGGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS GCA 72 bp | CTCATCCACCTTTATTTGCTCATAAGTCCTCTTCCTTaGCTTCTTATCTCCATACAGCGCGTGCTTGAGTTG | + |
|
Preference number: 6 (lower is better) Translates to: LIHLYLLISPLP*LLISIQRVLEL Trigger: CAACTCAAGCACGCGCTGTATGGAGATAAGAAGGCAAGGAAGAGGACTTATGAGCAAATAAAGGTGGATGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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| CDS CAA 72 bp | TTCTTTGTCTGTTATCTTCTCAAGCAGGGACACTTCTaGAACTTCGACAGGCAAAGACGCTATCCTTTGATG | + |
|
Preference number: 6 (lower is better) Translates to: FFVCYLLKQGHF*NFDRQRRYPLM Trigger: CATCAAAGGATAGCGTCTTTGCCTGTCGAAGTTCAAGAAGTGTCCCTGCTTGAGAAGATAACAGACAAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046206.5 |
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