Pregenerated sensors for RPP40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021418Ensembl transcript IDs: ENSMUST00000171686.9, ENSMUST00000174230.2, ENSMUST00000174231.2
Found 118 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGGCTGGAGGGTGGAGGAAGCAGTCCTATGATGAAGTTCCCTGGTaGCTTTCCTCCACAGGGAAAAGGTCCTTTACCTCCCGTTCCCAC | + |
|
Preference number: 1 (lower is better) Translates to: VAGGWRKQSYDEVPW*LSSTGKRSFTSRSH Trigger: GTGGGAACGGGAGGTAAAGGACCTTTTCCCTGTGGAGGAAAGCCACCAGGGAACTTCATCATAGGACTGCTTCCTCCACCCTCCAGCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 90 bp | AGTGTGGCTGGAGGGTGGAGGAAGCAGTCCTATGATGAAGTTCCCTaGTGGCTTTCCTCCACAGGGAAAAGGTCCTTTACCTCCCGTTCC | + |
|
Preference number: 1 (lower is better) Translates to: SVAGGWRKQSYDEVP*WLSSTGKRSFTSRS Trigger: GGAACGGGAGGTAAAGGACCTTTTCCCTGTGGAGGAAAGCCACCAGGGAACTTCATCATAGGACTGCTTCCTCCACCCTCCAGCCACACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 90 bp | GCACATGTCCTAGGAGGCTGCGCTAAGAGACTCTGGGAATGGTCTTaGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGGTTCACC | + |
|
Preference number: 1 (lower is better) Translates to: AHVLGGCAKRLWEWS*LLPRRTTTWLCWFT Trigger: GGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGCGCAGCCTCCTAGGACATGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 90 bp | CCTTCCCAAAGTTGTACTCTAAGAACCCAGAGTGTGGCTGGAGGGTaGAGGAAGCAGTCCTATGATGAAGTTCCCTGGTGGCTTTCCTCC | + |
|
Preference number: 1 (lower is better) Translates to: PSQSCTLRTQSVAGG*RKQSYDEVPWWLSS Trigger: GGAGGAAAGCCACCAGGGAACTTCATCATAGGACTGCTTCCTCCACCCTCCAGCCACACTCTGGGTTCTTAGAGTACAACTTTGGGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 90 bp | CATCTTGGTTATCTGCTGATACACTTGGGCGGAAGAAACCTCAGTTaGGGAACCACCTCCATCAATCTGGCTCCTAAGCATGTCTATGGG | + |
|
Preference number: 1 (lower is better) Translates to: HLGYLLIHLGGRNLS*GTTSINLAPKHVYG Trigger: CCCATAGACATGCTTAGGAGCCAGATTGATGGAGGTGGTTCCTCAACTGAGGTTTCTTCCGCCCAAGTGTATCAGCAGATAACCAAGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 90 bp | AGGGGGCAGGTATACATAGTATTGGGTCACATGATGACAGGGACATaGGCTAAGGCAAGTATTGACAGGCAATTTGGTTGTTACGTGATC | + |
|
Preference number: 1 (lower is better) Translates to: RGQVYIVLGHMMTGT*AKASIDRQFGCYVI Trigger: GATCACGTAACAACCAAATTGCCTGTCAATACTTGCCTTAGCCCATGTCCCTGTCATCATGTGACCCAATACTATGTATACCTGCCCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 90 bp | CTTTCCTTTACCTTTAGAGAAAGATGGCTCAGAAGAAACTCGGGCTaGGGAACTGGAATCCTGCAGAGAATCATGCCTTCCCAAAGTTGT | + |
|
Preference number: 1 (lower is better) Translates to: LSFTFRERWLRRNSG*GTGILQRIMPSQSC Trigger: ACAACTTTGGGAAGGCATGATTCTCTGCAGGATTCCAGTTCCCCAGCCCGAGTTTCTTCTGAGCCATCTTTCTCTAAAGGTAAAGGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 90 bp | ACGTTGCTCTGGCCAACAGAAAACCAAACTAGAAGAGTTCATCCATaGTTAGCACCTAGAACACTCACCAAGTGCTCCACTCCTGCTATT | + |
|
Preference number: 1 (lower is better) Translates to: TLLWPTENQTRRVHP*LAPRTLTKCSTPAI Trigger: AATAGCAGGAGTGGAGCACTTGGTGAGTGTTCTAGGTGCTAATCATGGATGAACTCTTCTAGTTTGGTTTTCTGTTGGCCAGAGCAACGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 90 bp | CAACATGAGATCCTGGGGACACACAAAAATTCTGATGGTTCATCTTaGTTATCTGCTGATACACTTGGGCGGAAGAAACCTCAGTTGAGG | + |
|
Preference number: 1 (lower is better) Translates to: QHEILGTHKNSDGSS*LSADTLGRKKPQLR Trigger: CCTCAACTGAGGTTTCTTCCGCCCAAGTGTATCAGCAGATAACCAAGATGAACCATCAGAATTTTTGTGTGTCCCCAGGATCTCATGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 90 bp | GTGTGTTGTCCTGATAATACACTTTCCTTTACCTTTAGAGAAAGATaGCTCAGAAGAAACTCGGGCTGGGGAACTGGAATCCTGCAGAGA | + |
|
Preference number: 1 (lower is better) Translates to: VCCPDNTLSFTFRER*LRRNSGWGTGILQR Trigger: TCTCTGCAGGATTCCAGTTCCCCAGCCCGAGTTTCTTCTGAGCCATCTTTCTCTAAAGGTAAAGGAAAGTGTATTATCAGGACAACACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTCCAGAAGACGGTGAGTaGGTCCCAGATGTCAGGCCC | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTAPEDGE*VPDVRP Trigger: GGGCCTGACATCTGGGACTCACTCACCGTCTTCTGG...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR GCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTAGGATAAGCAGCCAGTaGACAGGGGCCACGGCACAG | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTARISSQ*TGATAQ Trigger: CTGTGCCGTGGCCCCTGTGCACTGGCTGCTTATCCT...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CAA 90 bp | GGGCTGGGGAACTGGAATCCTGCAGAGAATCATGCCTTCCCAAAGTaGTACTCTAAGAACCCAGAGTGTGGCTGGAGGGTGGAGGAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: GLGNWNPAENHAFPK*YSKNPECGWRVEEA Trigger: TGCTTCCTCCACCCTCCAGCCACACTCTGGGTTCTTAGAGTACAACTTTGGGAAGGCATGATTCTCTGCAGGATTCCAGTTCCCCAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR GCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTCCACCTCTGACTTCCTaGTGGGCTGGTGCTTACATT | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTAPPLTS*WAGAYI Trigger: AATGTAAGCACCAGCCCAGCAGGAAGTCAGAGGTGG...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | GACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGAAGCAAGCCAGAGCTaGGCTGGGAAGCTAATCACT | + |
|
Preference number: 2 (lower is better) Translates to: DSGNGLGSYQEEPPPGFVEASQS*AGKLIT Trigger: AGTGATTAGCTTCCCAGCTCAGCTCTGGCTTGCTTC...AACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTAGACATGCTGTGTGCTaGGAATTGCCTTGGAGTCCA | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTARHAVC*ELPWSP Trigger: TGGACTCCAAGGCAATTCTCAGCACACAGCATGTCT...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR GCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTCTGTGTGCTGAGAATTaGCTTGGAGTCCAGAAGACG | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTALCAEN*LGVQKT Trigger: CGTCTTCTGGACTCCAAGGCAATTCTCAGCACACAG...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCCTCTGACTTCCTGCTaGGCTGGTGCTTACATTCTT | + |
|
Preference number: 2 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWPLTSC*AGAYIL Trigger: AAGAATGTAAGCACCAGCCCAGCAGGAAGTCAGAGG...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTCACTCTGCATTCAACTaGAAAACCAGCTCAGAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTAHSAFN*KTSSEL Trigger: CAGCTCTGAGCTGGTTTTTCAGTTGAATGCAGAGTG...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTGGAAGAAACCTCAGTTaGGGAACCACCTCCATCAAT | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTAGRNLS*GTTSIN Trigger: ATTGATGGAGGTGGTTCCTCAACTGAGGTTTCTTCC...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTAGATGTCAGGCCCTGTaGTTCTGGAGCTACCTTTTT | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTARCQAL*FWSYLF Trigger: AAAAAGGTAGCTCCAGAATCACAGGGCCTGACATCT...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | GAGCAAGAGCCTGGTATTCAGAGGCCCTGCATCCTATCCTGGCAACAAACTCTTTGTCACATAAGCACGTaGGCAGCGTGTGCTCTAAGA | + |
|
Preference number: 2 (lower is better) Translates to: EQEPGIQRPCILSWQQTLCHIST*AACALR Trigger: TCTTAGAGCACACGCTGCTCACGTGCTTATGTGACA...AAGAGTTTGTTGCCAGGATAGGATGCAGGGCCTCTGAATACCAGGCTCTTGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR GCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTAGAACACTCACCAAGTaGTCCACTCCTGCTATTCTC | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTARTLTK*STPAIL Trigger: GAGAATAGCAGGAGTGGAGCACTTGGTGAGTGTTCT...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCCCTGCATCCTATCCTaGCAACAAACTCTTCTAAAG | + |
|
Preference number: 2 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWPCILS*QQTLLK Trigger: CTTTAGAAGAGTTTGTTGCCAGGATAGGATGCAGGG...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTACCACCTGGCTTTGTTaGTTCACCACTGTCAACATA | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTATTWLC*FTTVNI Trigger: TATGTTGACAGTGGTGAACCAACAAAGCCAGGTGGT...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTTGGTGCTTACATTCTTaGGGGAGAAAGAATAGAACG | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTAWCLHS*GRKNRT Trigger: CGTTCTATTCTTTCTCCCTCAAGAATGTAAGCACCA...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CCA 90 bp | GACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTATGATGACAGGGACATaGGCTAAGGCAAGTATTGAC | + |
|
Preference number: 2 (lower is better) Translates to: DSGNGLGSYQEEPPPGFVMMTGT*AKASID Trigger: GTCAATACTTGCCTTAGCCCATGTCCCTGTCATCAT...AACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR GCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTGTGGTTCTTCCCTTTTaGTGTAAGAAGGTATTCAAC | + |
|
Preference number: 2 (lower is better) Translates to: PATSTGFLLESAVHLHTAVVLPF*CKKVFN Trigger: GTTGAATACCTTCTTACAGCAAAAGGGAAGAACCAC...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTGGAGCTACCTTTTTaGACTTTGGTTTTAAGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWLELPF*TLVLSV Trigger: CACACTTAAAACCAAAGTCCAAAAAGGTAGCTCCAG...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGTTGGCATGTGTAGCTTaGAATCTAGTTTTGTTTGTG | + |
|
Preference number: 2 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWLACVA*NLVLFV Trigger: CACAAACAAAACTAGATTTCAAGCTACACATGCCAA...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR GCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGACTGCAGGAGATACTTaGATAAAACCAGATGGTTTA | + |
|
Preference number: 2 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWTAGDT*IKPDGL Trigger: TAAACCATCTGGTTTTATGCAAGTATCTCCTGCAGT...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CCA 90 bp | CACAAGAAGGCACCTTCAGCAAGTCCACTTCCACTTAAGAAAACTTATCTCACCAGTGGCATTCCTCCATaGTCTCTGCTTCAGTTCCTG | + |
|
Preference number: 2 (lower is better) Translates to: HKKAPSASPLPLKKTYLTSGIPP*SLLQFL Trigger: CAGGAACTGAAGCAGAGACCATGGAGGAATGCCACT...GGTGAGATAAGTTTTCTTAAGTGGAAGTGGACTTGCTGAAGGTGCCTTCTTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | CTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGGTTCACCACTGTCAACATATATGGGGTATTTTCTTaGATGCTGGTTCATCAAGGG | + |
|
Preference number: 2 (lower is better) Translates to: LLPRRTTTWLCWFTTVNIYGVFS*MLVHQG Trigger: CCCTTGATGAACCAGCATTCAAGAAAATACCCCATA...TATGTTGACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | GACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGACACACAAAAATTCTaGTGGTTCATCTTGGTTATC | + |
|
Preference number: 2 (lower is better) Translates to: DSGNGLGSYQEEPPPGFVDTQKF*WFILVI Trigger: GATAACCAAGATGAACCATCAGAATTTTTGTGTGTC...AACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR TCA 90 bp | GAGCAAGAGCCTGGTATTCAGAGGCCCTGCATCCTATCCTGGCAACAAACTCTTTATTTTATATCAACATaGGATCCTGGGGACACACAA | + |
|
Preference number: 2 (lower is better) Translates to: EQEPGIQRPCILSWQQTLYFIST*DPGDTQ Trigger: TTGTGTGTCCCCAGGATCTCATGTTGATATAAAATA...AAGAGTTTGTTGCCAGGATAGGATGCAGGGCCTCTGAATACCAGGCTCTTGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CCA 90 bp | GATACTTGCATAAAACCAGATGGTTTATTGCCTTCTAGACATCTAGGATATATGCCACCTCCATCAATCTaGCTCCTAAGCATGTCTATG | + |
|
Preference number: 2 (lower is better) Translates to: DTCIKPDGLLPSRHLGYMPPPSI*LLSMSM Trigger: CATAGACATGCTTAGGAGCCAGATTGATGGAGGTGG...CATATATCCTAGATGTCTAGAAGGCAATAAACCATCTGGTTTTATGCAAGTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CCA 90 bp | GATACTTGCATAAAACCAGATGGTTTATTGCCTTCTAGACATCTAGGATATATGATCAACATGAGATCCTaGGGACACACAAAAATTCTG | + |
|
Preference number: 2 (lower is better) Translates to: DTCIKPDGLLPSRHLGYMINMRS*GHTKIL Trigger: CAGAATTTTTGTGTGTCCCCAGGATCTCATGTTGAT...CATATATCCTAGATGTCTAGAAGGCAATAAACCATCTGGTTTTATGCAAGTATC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR GCA 72 bp | AACCAGCTCAGAGCTGATCGTAGGATAAGCAGCCAGTaGACAGGGGCCACGGCACAGGAGGAAGCAAGCCAG | + |
|
Preference number: 3 (lower is better) Translates to: NQLRADRRISSQ*TGATAQEEASQ Trigger: CTGGCTTGCTTCCTCCTGTGCCGTGGCCCCTGTGCACTGGCTGCTTATCCTACGATCAGCTCTGAGCTGGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | CATGTCCTAGGAGGCTGCGCTAAGAGACTCTGGGAATaGTCTTGGCTCCTACCAAGAAGAACCACCACCTGG | + |
|
Preference number: 3 (lower is better) Translates to: HVLGGCAKRLWE*SWLLPRRTTTW Trigger: CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGCGCAGCCTCCTAGGACATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | GCAGCACATGTCCTAGGAGGCTGCGCTAAGAGACTCTaGGAATGGTCTTGGCTCCTACCAAGAAGAACCACC | + |
|
Preference number: 3 (lower is better) Translates to: AAHVLGGCAKRL*EWSWLLPRRTT Trigger: GGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGCGCAGCCTCCTAGGACATGTGCTGC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR GCA 72 bp | GGGTCTGCTCAAATCCTGCTACAAGCACAGGCTTCCTaGTGGAAAGTGCAGTACACTTGCACACAGCTTCCC | + |
|
Preference number: 3 (lower is better) Translates to: GSAQILLQAQAS*WKVQYTCTQLP Trigger: GGGAAGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGGATTTGAGCAGACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | CTAGGAGGCTGCGCTAAGAGACTCTGGGAATGGTCTTaGCTCCTACCAAGAAGAACCACCACCTGGCTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: LGGCAKRLWEWS*LLPRRTTTWLC Trigger: ACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGCGCAGCCTCCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | GGGTGGAGGAAGCAGTCCTATGATGAAGTTCCCTGGTaGCTTTCCTCCACAGGGAAAAGGTCCTTTACCTCC | + |
|
Preference number: 3 (lower is better) Translates to: GWRKQSYDEVPW*LSSTGKRSFTS Trigger: GGAGGTAAAGGACCTTTTCCCTGTGGAGGAAAGCCACCAGGGAACTTCATCATAGGACTGCTTCCTCCACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | GGAGGGTGGAGGAAGCAGTCCTATGATGAAGTTCCCTaGTGGCTTTCCTCCACAGGGAAAAGGTCCTTTACC | + |
|
Preference number: 3 (lower is better) Translates to: GGWRKQSYDEVP*WLSSTGKRSFT Trigger: GGTAAAGGACCTTTTCCCTGTGGAGGAAAGCCACCAGGGAACTTCATCATAGGACTGCTTCCTCCACCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR GCA 72 bp | AGCCTTAGCCTACTAGACATGCTGTGTGCTGAGAATTaGCTTGGAGTCCAGAAGACGGTGAGTGAGTCCCAG | + |
|
Preference number: 3 (lower is better) Translates to: SLSLLDMLCAEN*LGVQKTVSESQ Trigger: CTGGGACTCACTCACCGTCTTCTGGACTCCAAGGCAATTCTCAGCACACAGCATGTCTAGTAGGCTAAGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR GCA 72 bp | AGTCTAGATATGCCTGCAGCACATGTCCTAGGAGGCTaGGCTAAGAGACTCTGGGAATGGTCTTGGCTCCTA | + |
|
Preference number: 3 (lower is better) Translates to: SLDMPAAHVLGG*AKRLWEWSWLL Trigger: TAGGAGCCAAGACCATTCCCAGAGTCTCTTAGCGCAGCCTCCTAGGACATGTGCTGCAGGCATATCTAGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | GGACTGCAGTCGGTCCTGTCCTCACAGACGTTGCTCTaGCCAACAGAAAACCAAACTAGAAGAGTTCATCCA | + |
|
Preference number: 3 (lower is better) Translates to: GLQSVLSSQTLL*PTENQTRRVHP Trigger: TGGATGAACTCTTCTAGTTTGGTTTTCTGTTGGCCAGAGCAACGTCTGTGAGGACAGGACCGACTGCAGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | CTGGGCTATATAAGAAAGCTAGGTGAGCAAGCCGAGTaGCATTCCTCCATGGTCTCTGCTTCAGTTCCTGTC | + |
|
Preference number: 3 (lower is better) Translates to: LGYIRKLGEQAE*HSSMVSASVPV Trigger: GACAGGAACTGAAGCAGAGACCATGGAGGAATGCCACTCGGCTTGCTCACCTAGCTTTCTTATATAGCCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR GCA 72 bp | ATGATGGACTGCAGTCGGTCCTGTCCTCACAGACGTTaGTCTGGCCAACAGAAAACCAAACTAGAAGAGTTC | + |
|
Preference number: 3 (lower is better) Translates to: MMDCSRSCPHRR*SGQQKTKLEEF Trigger: GAACTCTTCTAGTTTGGTTTTCTGTTGGCCAGAGCAACGTCTGTGAGGACAGGACCGACTGCAGTCCATCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR GCA 72 bp | AAATCCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTaGAGTACACTTGCACACAGCTTCCCTGCTAGTCTA | + |
|
Preference number: 3 (lower is better) Translates to: KSCYKHRLPAGK*STLAHSFPASL Trigger: TAGACTAGCAGGGAAGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGGATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | AGAAAGATGGCTCAGAAGAAACTCGGGCTGGGGAACTaGAATCCTGCAGAGAATCATGCCTTCCCAAAGTTG | + |
|
Preference number: 3 (lower is better) Translates to: RKMAQKKLGLGN*NPAENHAFPKL Trigger: CAACTTTGGGAAGGCATGATTCTCTGCAGGATTCCAGTTCCCCAGCCCGAGTTTCTTCTGAGCCATCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CAA 90 bp | GACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGGGCTAAGGCAAGTATaGACAGGCAATTTGGTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: DSGNGLGSYQEEPPPGFVGLRQV*TGNLVV Trigger: AACAACCAAATTGCCTGTCAATACTTGCCTTAGCCC...AACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 72 bp | TATCTGCTGATACACTTGGGCGGAAGAAACCTCAGTTaGGGAACCACCTCCATCAATCTGGCTCCTAAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: YLLIHLGGRNLS*GTTSINLAPKH Trigger: ATGCTTAGGAGCCAGATTGATGGAGGTGGTTCCTCAACTGAGGTTTCTTCCGCCCAAGTGTATCAGCAGATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 72 bp | ACCTCTGACTTCCTGCTGGGCTGGTGCTTACATTCTTaGGGGAGAAAGAATAGAACGGTTGGAAGATTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: TSDFLLGWCLHS*GRKNRTVGRFR Trigger: CCTGAATCTTCCAACCGTTCTATTCTTTCTCCCTCAAGAATGTAAGCACCAGCCCAGCAGGAAGTCAGAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR GCA 72 bp | AGACTGAAGTCAGATACAAAGGGTCTGCTCAAATCCTaGTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGT | + |
|
Preference number: 3 (lower is better) Translates to: RLKSDTKGLLKS*YKHRLPAGKCS Trigger: ACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGGATTTGAGCAGACCCTTTGTATCTGACTTCAGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CAA 90 bp | CTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGGTTCACCACTGTCAACATACAGGTATACATAGTATaGGGTCACATGATGACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: LLPRRTTTWLCWFTTVNIQVYIV*GHMMTG Trigger: CCCTGTCATCATGTGACCCAATACTATGTATACCTG...TATGTTGACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | GAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTaGCTTTGTTGGTTCACCACTGTCAACATACTTCTT | + |
|
Preference number: 3 (lower is better) Translates to: EWSWLLPRRTTT*LCWFTTVNILL Trigger: AAGAAGTATGTTGACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 72 bp | ACTTCAGACTATTGGTTGATGGAAGGCACTGAAGGATaGATTTGGGCTTCTCAAGCAGTGGAGATATCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: TSDYWLMEGTEG*IWASQAVEISG Trigger: GCCTGATATCTCCACTGCTTGAGAAGCCCAAATTCATCCTTCAGTGCCTTCCATCAACCAATAGTCTGAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 72 bp | TGGCCAACAGAAAACCAAACTAGAAGAGTTCATCCATaGTTAGCACCTAGAACACTCACCAAGTGCTCCACT | + |
|
Preference number: 3 (lower is better) Translates to: WPTENQTRRVHP*LAPRTLTKCST Trigger: AGTGGAGCACTTGGTGAGTGTTCTAGGTGCTAATCATGGATGAACTCTTCTAGTTTGGTTTTCTGTTGGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 72 bp | ACAGGTCAGTGCTCTGAATTACTTCAGACTATTGGTTaGTGGAAGGCACTGAAGGATGAATTTGGGCTTCTC | + |
|
Preference number: 3 (lower is better) Translates to: TGQCSELLQTIG*WKALKDEFGLL Trigger: GAGAAGCCCAAATTCATCCTTCAGTGCCTTCCATCAACCAATAGTCTGAAGTAATTCAGAGCACTGACCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | GAAGAAACCTCAGTTGAGGAACCACCTCCATCAATCTaGCTCCTAAGCATGTCTATGGGGTATTTTCTTGAA | + |
|
Preference number: 3 (lower is better) Translates to: EETSVEEPPPSI*LLSMSMGYFLE Trigger: TTCAAGAAAATACCCCATAGACATGCTTAGGAGCCAGATTGATGGAGGTGGTTCCTCAACTGAGGTTTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | ATCCTGGGGACACACAAAAATTCTGATGGTTCATCTTaGTTATCTGCTGATACACTTGGGCGGAAGAAACCT | + |
|
Preference number: 3 (lower is better) Translates to: ILGTHKNSDGSS*LSADTLGRKKP Trigger: AGGTTTCTTCCGCCCAAGTGTATCAGCAGATAACCAAGATGAACCATCAGAATTTTTGTGTGTCCCCAGGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | TGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTaGTTCACCACTGTCAACATACTTCTTGTTCTAAAT | + |
|
Preference number: 3 (lower is better) Translates to: WLLPRRTTTWLC*FTTVNILLVLN Trigger: ATTTAGAACAAGAAGTATGTTGACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | CCTGATAATACACTTTCCTTTACCTTTAGAGAAAGATaGCTCAGAAGAAACTCGGGCTGGGGAACTGGAATC | + |
|
Preference number: 3 (lower is better) Translates to: PDNTLSFTFRER*LRRNSGWGTGI Trigger: GATTCCAGTTCCCCAGCCCGAGTTTCTTCTGAGCCATCTTTCTCTAAAGGTAAAGGAAAGTGTATTATCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR-3UTR CAA 90 bp | ACTTTGGTTTTAAGTGTGGTTCTTCCCTTTTGCTGTAAGAAGGTATTCAACCTTCTGTCCTCACAGACGTaGCTCTGGCCAACAGAAAAC | + |
|
Preference number: 3 (lower is better) Translates to: TLVLSVVLPFCCKKVFNLLSSQT*LWPTEN Trigger: GTTTTCTGTTGGCCAGAGCAACGTCTGTGAGGACAG...AAGGTTGAATACCTTCTTACAGCAAAAGGGAAGAACCACACTTAAAACCAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | GTATACATAGTATTGGGTCACATGATGACAGGGACATaGGCTAAGGCAAGTATTGACAGGCAATTTGGTTGT | + |
|
Preference number: 3 (lower is better) Translates to: VYIVLGHMMTGT*AKASIDRQFGC Trigger: ACAACCAAATTGCCTGTCAATACTTGCCTTAGCCCATGTCCCTGTCATCATGTGACCCAATACTATGTATAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 72 bp | AGGAAGCTAATTAATATGGCATTGGCATGTGTAGCTTaGAATCTAGTTTTGTTTGTGGTGCCAGGGATGGGA | + |
|
Preference number: 3 (lower is better) Translates to: RKLINMALACVA*NLVLFVVPGMG Trigger: TCCCATCCCTGGCACCACAAACAAAACTAGATTTCAAGCTACACATGCCAATGCCATATTAATTAGCTTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR GCA 72 bp | CAATTTGGTTGTTACGTGATCACTGCAGGAGATACTTaGATAAAACCAGATGGTTTATTGCCTTCTAGACAT | + |
|
Preference number: 3 (lower is better) Translates to: QFGCYVITAGDT*IKPDGLLPSRH Trigger: ATGTCTAGAAGGCAATAAACCATCTGGTTTTATGCAAGTATCTCCTGCAGTGATCACGTAACAACCAAATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 72 bp | TTCAGCCATGATAGTCATGTCAACTTGAATTCATATTaGACTAGGAGTAACTATCATCCTAAATGTCCTTCC | + |
|
Preference number: 3 (lower is better) Translates to: FSHDSHVNLNSY*TRSNYHPKCPS Trigger: GGAAGGACATTTAGGATGATAGTTACTCCTAGTTCAATATGAATTCAAGTTGACATGACTATCATGGCTGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR TCA 72 bp | GCCTATAAGACTTCAGCCATGATAGTCATGTCAACTTaGATTCATATTGAACTAGGAGTAACTATCATCCTA | + |
|
Preference number: 3 (lower is better) Translates to: AYKTSAMIVMST*IHIELGVTIIL Trigger: TAGGATGATAGTTACTCCTAGTTCAATATGAATTCAAGTTGACATGACTATCATGGCTGAAGTCTTATAGGC 36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CCA 72 bp | TCAATTTGCACTGTATTTTATATCAACATGAGATCCTaGGGACACACAAAAATTCTGATGGTTCATCTTGGT | + |
|
Preference number: 3 (lower is better) Translates to: SICTVFYINMRS*GHTKILMVHLG Trigger: ACCAAGATGAACCATCAGAATTTTTGTGTGTCCCCAGGATCTCATGTTGATATAAAATACAGTGCAAATTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | TCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGGTTCACCACTGTCTGCCGAGGCGCCTCTTaGAGCCTGCGCAGCGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SWLLPRRTTTWLCWFTTVCRGAS*SLRSVA Trigger: GGCCACGCTGCGCAGGCTGCAAGAGGCGCCTCGGCA...GACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | CCTGCTACAAGCACAGGCTTCCTGCTGGAAAGTGCAGTACACTTGCACACAGCTCTCCTGCAAGCCCGCTaGTCCGCAGCACTGGGCACT | + |
|
Preference number: 4 (lower is better) Translates to: PATSTGFLLESAVHLHTALLQAR*SAALGT Trigger: AGTGCCCAGTGCTGCGGAGCAGCGGGCTTGCAGGAG...AGCTGTGTGCAAGTGTACTGCACTTTCCAGCAGGAAGCCTGTGCTTGTAGCAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCGCAGCACTGGGCACTaGAGCTCTCTCACTGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWRSTGH*SSLTVL Trigger: GAGCACAGTGAGAGAGCTGCAGTGCCCAGTGCTGCG...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CCA 90 bp | CACAAGAAGGCACCTTCAGCAAGTCCACTTCCACTTAAGAAAACTTATCTCACCGCTGCTCCGCAGCACTaGGCACTGCAGCTCTCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: HKKAPSASPLPLKKTYLTAAPQH*ALQLSH Trigger: GTGAGAGAGCTGCAGTGCCCAGTGCTGCGGAGCAGC...GGTGAGATAAGTTTTCTTAAGTGGAAGTGGACTTGCTGAAGGTGCCTTCTTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | GAGCAAGAGCCTGGTATTCAGAGGCCCTGCATCCTATCCTGGCAACAAACTCTTTGGGCAGTCATCATTTaGCCCAACAGCCATCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: EQEPGIQRPCILSWQQTLWAVII*PNSHLK Trigger: CTTCAGATGGCTGTTGGGGCAAATGATGACTGCCCA...AAGAGTTTGTTGCCAGGATAGGATGCAGGGCCTCTGAATACCAGGCTCTTGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CCA 90 bp | GAGCAAGAGCCTGGTATTCAGAGGCCCTGCATCCTATCCTGGCAACAAACTCTTTGGCGAGACTTATCGTaGCCGAAGTTGGATTTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: EQEPGIQRPCILSWQQTLWRDLS*PKLDFS Trigger: TGAGAAATCCAACTTCGGCCACGATAAGTCTCGCCA...AAGAGTTTGTTGCCAGGATAGGATGCAGGGCCTCTGAATACCAGGCTCTTGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CAA 72 bp | GATGATGGACTGCAGTCGGTCCTGTCCTCACAGACGTaGCTCTGGCCAACAGAAAACCAAACTAGAAGAGTT | + |
|
Preference number: 4 (lower is better) Translates to: DDGLQSVLSSQT*LWPTENQTRRV Trigger: AACTCTTCTAGTTTGGTTTTCTGTTGGCCAGAGCAACGTCTGTGAGGACAGGACCGACTGCAGTCCATCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CAA 72 bp | TTACTGAACTTCACACCACTGGCAGCAAAGGAGGGTTaGTTCACACCACTGTCACATAAGCACGTGAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LLNFTPLAAKEG*FTPLSHKHVSS Trigger: GCTGCTCACGTGCTTATGTGACAGTGGTGTGAACAAACCCTCCTTTGCTGCCAGTGGTGTGAAGTTCAGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CAA 72 bp | TGGAAGATTCAGGGTAGGGGGCAGGTATACATAGTATaGGGTCACATGATGACAGGGACATGGGCTAAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: WKIQGRGQVYIV*GHMMTGTWAKA Trigger: TGCCTTAGCCCATGTCCCTGTCATCATGTGACCCAATACTATGTATACCTGCCCCCTACCCTGAATCTTCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CCA 90 bp | GACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTTATCGTGGCCGAAGTTaGATTTCTCACAGACCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: DSGNGLGSYQEEPPPGFVYRGRS*ISHRPV Trigger: TACTGGTCTGTGAGAAATCCAACTTCGGCCACGATA...AACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGACTTCATACTTTTTCTaGCAGAATACCGAGATGGAC | + |
|
Preference number: 4 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWTSYFF*QNTEMD Trigger: GTCCATCTCGGTATTCTGGCAGAAAAAGTATGAAGT...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | CACTCCTGCTATTCTCAATCATTCCGGTTTACCCTACTCTCTAGTAAGCAACACGGCAACGGGGCTGTCTaGAAAGCCTTGAACTGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: HSCYSQSFRFTLLSSKQHGNGAV*KALNCQ Trigger: TTGACAGTTCAAGGCTTTGCAGACAGCCCCGTTGCC...GTGTTGCTTACTAGAGAGTAGGGTAAACCGGAATGATTGAGAATAGCAGGAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGACAAAATTGTACAAGTaGTCGCCTCCTTTATGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWTKLYK*SPPLWK Trigger: CTTCCATAAAGGAGGCGAGCACTTGTACAATTTTGT...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CAA 72 bp | GTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTTaGTTGGTTCACCACTGTCAACATACTTCTTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: VLAPTKKNHHLA*LVHHCQHTSCS Trigger: AGAACAAGAAGTATGTTGACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGAC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CCA 90 bp | GCTAAGAGACTCTGGGAATGGTCTTGGCTCCTACCAAGAAGAACCACCACCTGGCCTGAATTTGGTATTTaGAAAAGTACGACATCATTG | + |
|
Preference number: 4 (lower is better) Translates to: AKRLWEWSWLLPRRTTTWPEFGI*KSTTSL Trigger: CAATGATGTCGTACTTTTCCAAATACCAAATTCAGG...CCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGACCATTCCCAGAGTCTCTTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CCA 90 bp | CACAAGAAGGCACCTTCAGCAAGTCCACTTCCACTTAAGAAAACTTATCTCACCTGCTCAATGCCACTTTaGGCTGATGCTCCTGAATTT | + |
|
Preference number: 4 (lower is better) Translates to: HKKAPSASPLPLKKTYLTCSMPL*ADAPEF Trigger: AAATTCAGGAGCATCAGCCCAAAGTGGCATTGAGCA...GGTGAGATAAGTTTTCTTAAGTGGAAGTGGACTTGCTGAAGGTGCCTTCTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| 3UTR CAA 72 bp | TTGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTaGGTTCACCACTGTCAACATACTTCTTGTTCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: LAPTKKNHHLAL*VHHCQHTSCSK Trigger: TTTAGAACAAGAAGTATGTTGACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | GATACTTGCATAAAACCAGATGGTTTATTGCCTTCTAGACATCTAGGATATATGGCAGCTCTCTCACTGTaGTCAATGCCACTTTGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: DTCIKPDGLLPSRHLGYMAALSL*SMPLWA Trigger: AGCCCAAAGTGGCATTGAGCACAGTGAGAGAGCTGC...CATATATCCTAGATGTCTAGAAGGCAATAAACCATCTGGTTTTATGCAAGTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR GCA 90 bp | GATACTTGCATAAAACCAGATGGTTTATTGCCTTCTAGACATCTAGGATATATGTATTTAGGTCCGCACTaGAGAAGACAGCACCAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: DTCIKPDGLLPSRHLGYMYLGPH*RRQHQA Trigger: GGCTTGGTGCTGTCTTCTGCAGTGCGGACCTAAATA...CATATATCCTAGATGTCTAGAAGGCAATAAACCATCTGGTTTTATGCAAGTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CCA 90 bp | CACTCCTGCTATTCTCAATCATTCCGGTTTACCCTACTCTCTAGTAAGCAACACGACATGTATCTTCTCTaGCAATATGAAACCTGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: HSCYSQSFRFTLLSSKQHDMYLL*QYETCD Trigger: ATCACAGGTTTCATATTGCCAGAGAAGATACATGTC...GTGTTGCTTACTAGAGAGTAGGGTAAACCGGAATGATTGAGAATAGCAGGAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CCA 90 bp | GTTTTAAGTGTGGTTCTTCCCTTTTGCTGTAAGAAGGTATTCAACCTTGATTTTTGCTCGCCTCCTTTATaGAAGCCATGTTCCTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: VLSVVLPFCCKKVFNLDFCSPPL*KPCSFS Trigger: AGAGAAGGAACATGGCTTCCATAAAGGAGGCGAGCA...AAAATCAAGGTTGAATACCTTCTTACAGCAAAAGGGAAGAACCACACTTAAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR TCA 90 bp | GTTTTAAGTGTGGTTCTTCCCTTTTGCTGTAAGAAGGTATTCAACCTTGATTTTAGCAGTAGGTTGATATaGAGTTATAAGGCTCGTTAT | + |
|
Preference number: 4 (lower is better) Translates to: VLSVVLPFCCKKVFNLDFSSRLI*SYKARY Trigger: ATAACGAGCCTTATAACTTCATATCAACCTACTGCT...AAAATCAAGGTTGAATACCTTCTTACAGCAAAAGGGAAGAACCACACTTAAAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS GCA 90 bp | ACTCCAGGGCACTGCAGGCCTCCTCCGGCTCTCCTGCAAGCCCGCTaGTCCGCAGCACTGGGCACTGCAGCTCTCTCACTGTGCTCAATG | + |
|
Preference number: 5 (lower is better) Translates to: TPGHCRPPPALLQAR*SAALGTAALSLCSM Trigger: CATTGAGCACAGTGAGAGAGCTGCAGTGCCCAGTGCTGCGGAGCAGCGGGCTTGCAGGAGAGCCGGAGGAGGCCTGCAGTGCCCTGGAGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS GCA 90 bp | CCAGTCAAAGAACTCCAGGGCACTGCAGGCCTCCTCCGGCTCTCCTaGAAGCCCGCTGCTCCGCAGCACTGGGCACTGCAGCTCTCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: PVKELQGTAGLLRLS*KPAAPQHWALQLSH Trigger: GTGAGAGAGCTGCAGTGCCCAGTGCTGCGGAGCAGCGGGCTTGCAGGAGAGCCGGAGGAGGCCTGCAGTGCCCTGGAGTTCTTTGACTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS-3UTR CAA 90 bp | CTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGGTTCACCACTGTCAACATAGTGCCGAGGCGCCTCTaGCAGCCTGCGCAGCGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: LLPRRTTTWLCWFTTVNIVPRRL*QPAQRG Trigger: GCCACGCTGCGCAGGCTGCAAGAGGCGCCTCGGCAC...TATGTTGACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS GCA 90 bp | CAAGCCCGCTGCTCCGCAGCACTGGGCACTGCAGCTCTCTCACTGTaGTCAATGCCACTTTGGGCTGATGCTCCTGAATTTGGTATTTGG | + |
|
Preference number: 5 (lower is better) Translates to: QARCSAALGTAALSL*SMPLWADAPEFGIW Trigger: CCAAATACCAAATTCAGGAGCATCAGCCCAAAGTGGCATTGAGCACAGTGAGAGAGCTGCAGTGCCCAGTGCTGCGGAGCAGCGGGCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS TCA 90 bp | CTTGGGCTACCACGGCGCTTGGCTGGGGACAGCAGTAGGTTGATATaGAGTTATAAGGCTCGTTATTTAGGTCCGCACTGCAGAAGACAG | + |
|
Preference number: 5 (lower is better) Translates to: LGLPRRLAGDSSRLI*SYKARYLGPHCRRQ Trigger: CTGTCTTCTGCAGTGCGGACCTAAATAACGAGCCTTATAACTTCATATCAACCTACTGCTGTCCCCAGCCAAGCGCCGTGGTAGCCCAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS GCA 90 bp | GCTGCTCCGCAGCACTGGGCACTGCAGCTCTCTCACTGTGCTCAATaGCACTTTGGGCTGATGCTCCTGAATTTGGTATTTGGAAAAGTA | + |
|
Preference number: 5 (lower is better) Translates to: AAPQHWALQLSHCAQ*HFGLMLLNLVFGKV Trigger: TACTTTTCCAAATACCAAATTCAGGAGCATCAGCCCAAAGTGGCATTGAGCACAGTGAGAGAGCTGCAGTGCCCAGTGCTGCGGAGCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS CCA 90 bp | GTCTGCAAAGCCTTGAACTGTCAAGGTGACCCATGGAGCCAACTTTaGTTCATCGAAGTAGTGAAGGTCCGCACTGCAGAAGACAGCACC | + |
|
Preference number: 5 (lower is better) Translates to: VCKALNCQGDPWSQL*FIEVVKVRTAEDST Trigger: GGTGCTGTCTTCTGCAGTGCGGACCTTCACTACTTCGATGAACCAAAGTTGGCTCCATGGGTCACCTTGACAGTTCAAGGCTTTGCAGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174231.2 |
||
| CDS-3UTR CAA 90 bp | TCTTGGCTCCTACCAAGAAGAACCACCACCTGGCTTTGTTGGTTCACCACTGTCCCGAGATGGACGACCTaGAAGTCCGGTTTCTTCGTA | + |
|
Preference number: 5 (lower is better) Translates to: SWLLPRRTTTWLCWFTTVPRWTT*KSGFFV Trigger: TACGAAGAAACCGGACTTCAAGGTCGTCCATCTCGG...GACAGTGGTGAACCAACAAAGCCAGGTGGTGGTTCTTCTTGGTAGGAGCCAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CAA 90 bp | GATACTTGCATAAAACCAGATGGTTTATTGCCTTCTAGACATCTAGGATATATGGGGCTACCACGGCGCTaGGCTGGGGACAGCAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: DTCIKPDGLLPSRHLGYMGLPRR*AGDSSR Trigger: CCTACTGCTGTCCCCAGCCAAGCGCCGTGGTAGCCC...CATATATCCTAGATGTCTAGAAGGCAATAAACCATCTGGTTTTATGCAAGTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS CCA 90 bp | GTCTGCAAAGCCTTGAACTGTCAAGGTGACCCATGGAGCCAACTTTaGTTCATCGAAGTAGTGACACAGCTGTTCCAGAAGGACATGTAT | + |
|
Preference number: 5 (lower is better) Translates to: VCKALNCQGDPWSQL*FIEVVTQLFQKDMY Trigger: ATACATGTCCTTCTGGAACAGCTGTGTCACTACTTCGATGAACCAAAGTTGGCTCCATGGGTCACCTTGACAGTTCAAGGCTTTGCAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS-3UTR CAA 90 bp | CACTCCTGCTATTCTCAATCATTCCGGTTTACCCTACTCTCTAGTAAGCAACACCCCATGGAGCCAACTTaGGTTCATCGAAGTAGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: HSCYSQSFRFTLLSSKQHPMEPT*VHRSSD Trigger: GTCACTACTTCGATGAACCAAAGTTGGCTCCATGGG...GTGTTGCTTACTAGAGAGTAGGGTAAACCGGAATGATTGAGAATAGCAGGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CAA 90 bp | CACAAGAAGGCACCTTCAGCAAGTCCACTTCCACTTAAGAAAACTTATCTCACCCTGATGCTCCTGAATTaGGTATTTGGAAAAGTACGA | + |
|
Preference number: 5 (lower is better) Translates to: HKKAPSASPLPLKKTYLTLMLLN*VFGKVR Trigger: TCGTACTTTTCCAAATACCAAATTCAGGAGCATCAG...GGTGAGATAAGTTTTCTTAAGTGGAAGTGGACTTGCTGAAGGTGCCTTCTTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CAA 90 bp | GTTTTAAGTGTGGTTCTTCCCTTTTGCTGTAAGAAGGTATTCAACCTTGATTTTGTGGGCAGTCATCATTaGCCCCAACAGCCATCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: VLSVVLPFCCKKVFNLDFVGSHH*PQQPSE Trigger: TTCAGATGGCTGTTGGGGCAAATGATGACTGCCCAC...AAAATCAAGGTTGAATACCTTCTTACAGCAAAAGGGAAGAACCACACTTAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CAA 90 bp | ACTTTGGTTTTAAGTGTGGTTCTTCCCTTTTGCTGTAAGAAGGTATTCAACCTTTTATCGTGGCCGAAGTaGGATTTCTCACAGACCAGT | + |
|
Preference number: 5 (lower is better) Translates to: TLVLSVVLPFCCKKVFNLLSWPK*DFSQTS Trigger: ACTGGTCTGTGAGAAATCCAACTTCGGCCACGATAA...AAGGTTGAATACCTTCTTACAGCAAAAGGGAAGAACCACACTTAAAACCAAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS-3UTR CAA 90 bp | CACTCCTGCTATTCTCAATCATTCCGGTTTACCCTACTCTCTAGTAAGCAACACAAAGGCTTCTTCTCTTaGAAGGACCAAGATATTCTT | + |
|
Preference number: 5 (lower is better) Translates to: HSCYSQSFRFTLLSSKQHKGFFS*KDQDIL Trigger: AAGAATATCTTGGTCCTTCAAAGAGAAGAAGCCTTT...GTGTTGCTTACTAGAGAGTAGGGTAAACCGGAATGATTGAGAATAGCAGGAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171686.9 |
||
| CDS GCA 72 bp | GAACTCCAGGGCACTGCAGGCCTCCTCCGGCTCTCCTaGAAGCCCGCTGCTCCGCAGCACTGGGCACTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: ELQGTAGLLRLS*KPAAPQHWALQ Trigger: CTGCAGTGCCCAGTGCTGCGGAGCAGCGGGCTTGCAGGAGAGCCGGAGGAGGCCTGCAGTGCCCTGGAGTTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS GCA 72 bp | GCCATGTTCCTTCTCTCTCCAGGCAACGGGGCTGTCTaGAAAGCCTTGAACTGTCAAGGTGACCCATGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: AMFLLSPGNGAV*KALNCQGDPWS Trigger: GCTCCATGGGTCACCTTGACAGTTCAAGGCTTTGCAGACAGCCCCGTTGCCTGGAGAGAGAAGGAACATGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 ENSMUST00000174231.2 |
||
| CDS GCA 72 bp | TGCTCCGCAGCACTGGGCACTGCAGCTCTCTCACTGTaGTCAATGCCACTTTGGGCTGATGCTCCTGAATTT | + |
|
Preference number: 6 (lower is better) Translates to: CSAALGTAALSL*SMPLWADAPEF Trigger: AAATTCAGGAGCATCAGCCCAAAGTGGCATTGAGCACAGTGAGAGAGCTGCAGTGCCCAGTGCTGCGGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS TCA 72 bp | CCACGGCGCTTGGCTGGGGACAGCAGTAGGTTGATATaGAGTTATAAGGCTCGTTATTTAGGTCCGCACTGC | + |
|
Preference number: 6 (lower is better) Translates to: PRRLAGDSSRLI*SYKARYLGPHC Trigger: GCAGTGCGGACCTAAATAACGAGCCTTATAACTTCATATCAACCTACTGCTGTCCCCAGCCAAGCGCCGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS GCA 72 bp | CAGCACTGGGCACTGCAGCTCTCTCACTGTGCTCAATaGCACTTTGGGCTGATGCTCCTGAATTTGGTATTT | + |
|
Preference number: 6 (lower is better) Translates to: QHWALQLSHCAQ*HFGLMLLNLVF Trigger: AAATACCAAATTCAGGAGCATCAGCCCAAAGTGGCATTGAGCACAGTGAGAGAGCTGCAGTGCCCAGTGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS CCA 72 bp | GCCTTGAACTGTCAAGGTGACCCATGGAGCCAACTTTaGTTCATCGAAGTAGTGAAGGTCCGCACTGCAGAA | + |
|
Preference number: 6 (lower is better) Translates to: ALNCQGDPWSQL*FIEVVKVRTAE Trigger: TTCTGCAGTGCGGACCTTCACTACTTCGATGAACCAAAGTTGGCTCCATGGGTCACCTTGACAGTTCAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174231.2 |
||
| CDS GCA 72 bp | CCAACTTTGGTTCATCGAAGTAGTGAAGGTCCGCACTaGAGAAGACAGCACCAAGCCAGTCAAAGAACTCCA | + |
|
Preference number: 6 (lower is better) Translates to: PTLVHRSSEGPH*RRQHQASQRTP Trigger: TGGAGTTCTTTGACTGGCTTGGTGCTGTCTTCTGCAGTGCGGACCTTCACTACTTCGATGAACCAAAGTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174231.2 |
||
| CDS CCA 72 bp | GCCTTGAACTGTCAAGGTGACCCATGGAGCCAACTTTaGTTCATCGAAGTAGTGACACAGCTGTTCCAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: ALNCQGDPWSQL*FIEVVTQLFQK Trigger: CTTCTGGAACAGCTGTGTCACTACTTCGATGAACCAAAGTTGGCTCCATGGGTCACCTTGACAGTTCAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS CCA 72 bp | GGCACTGCAGCTCTCTCACTGTGCTCAATGCCACTTTaGGCTGATGCTCCTGAATTTGGTATTTGGAAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: GTAALSLCSMPL*ADAPEFGIWKS Trigger: ACTTTTCCAAATACCAAATTCAGGAGCATCAGCCCAAAGTGGCATTGAGCACAGTGAGAGAGCTGCAGTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||
| CDS CCA 72 bp | ATGCCACTTTGGGCTGATGCTCCTGAATTTGGTATTTaGAAAAGTACGACATCATTGTTGATTCTTCTGTAC | + |
|
Preference number: 6 (lower is better) Translates to: MPLWADAPEFGI*KSTTSLLILLY Trigger: GTACAGAAGAATCAACAATGATGTCGTACTTTTCCAAATACCAAATTCAGGAGCATCAGCCCAAAGTGGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171686.9 ENSMUST00000174230.2 |
||