Pregenerated sensors for RPP38 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049950Ensembl transcript IDs: ENSMUST00000062672.7
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | TCCTGGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTGGGACCTTaGGTTCTGTCTGGAAGCCATGGCACGTTTAAGCTGGGCACCCTG | + |
Preference number: 5 (lower is better) Translates to: SWLSEGSVSKLSVGP*VLSGSHGTFKLGTL Trigger: CAGGGTGCCCAGCTTAAACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS CCA 90 bp | TCTCGTTGTCCTGGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTaGGACCTTGGGTTCTGTCTGGAAGCCATGGCACGTTTAAGCTGG | + |
Preference number: 5 (lower is better) Translates to: SRCPGFPRVQSLNCL*DLGFCLEAMARLSW Trigger: CCAGCTTAAACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS TCA 90 bp | AACACCAATGACCAGCTGTTTCCTGACGTGTACAGGTGTCCACCCTaGCACCAGCACATCCCCATCAGGCTCTTTTGGATCCTCGCTAAT | + |
Preference number: 5 (lower is better) Translates to: NTNDQLFPDVYRCPP*HQHIPIRLFWILAN Trigger: ATTAGCGAGGATCCAAAAGAGCCTGATGGGGATGTGCTGGTGTCAGGGTGGACACCTGTACACGTCAGGAAACAGCTGGTCATTGGTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS CCA 90 bp | AGTTTTGTAAGGTCATCAAATGACGTGTCCAAAATCTCGTTGTCCTaGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTGGGACCTTGG | + |
Preference number: 5 (lower is better) Translates to: SFVRSSNDVSKISLS*LSEGSVSKLSVGPW Trigger: CCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS TCA 90 bp | ACCTTCAGCAAGCTTCCTCTTACTAAGTTTTGTAAGGTCATCAAATaGCGTGTCCAAAATCTCGTTGTCCTGGCTTTCCGAGGGTTCAGT | + |
Preference number: 5 (lower is better) Translates to: TFSKLPLTKFCKVIK*RVQNLVVLAFRGFS Trigger: ACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAAACTTAGTAAGAGGAAGCTTGCTGAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS TCA 72 bp | GACCAGCTGTTTCCTGACGTGTACAGGTGTCCACCCTaGCACCAGCACATCCCCATCAGGCTCTTTTGGATC | + |
Preference number: 6 (lower is better) Translates to: DQLFPDVYRCPP*HQHIPIRLFWI Trigger: GATCCAAAAGAGCCTGATGGGGATGTGCTGGTGTCAGGGTGGACACCTGTACACGTCAGGAAACAGCTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS CCA 72 bp | CCTGGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTaGGACCTTGGGTTCTGTCTGGAAGCCATGGCACGT | + |
Preference number: 6 (lower is better) Translates to: PGFPRVQSLNCL*DLGFCLEAMAR Trigger: ACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS CCA 72 bp | TCCGAGGGTTCAGTCTCTAAACTGTCTGTGGGACCTTaGGTTCTGTCTGGAAGCCATGGCACGTTTAAGCTG | + |
Preference number: 6 (lower is better) Translates to: SEGSVSKLSVGP*VLSGSHGTFKL Trigger: CAGCTTAAACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS CCA 72 bp | AGGTCATCAAATGACGTGTCCAAAATCTCGTTGTCCTaGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTG | + |
Preference number: 6 (lower is better) Translates to: RSSNDVSKISLS*LSEGSVSKLSV Trigger: CACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS CAA 72 bp | TTTGTAAGGTCATCAAATGACGTGTCCAAAATCTCGTaGTCCTGGCTTTCCGAGGGTTCAGTCTCTAAACTG | + |
Preference number: 6 (lower is better) Translates to: FVRSSNDVSKIS*SWLSEGSVSKL Trigger: CAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS CAA 90 bp | TTACTAAGTTTTGTAAGGTCATCAAATGACGTGTCCAAAATCTCGTaGTCCTGGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTGGGA | + |
Preference number: 6 (lower is better) Translates to: LLSFVRSSNDVSKIS*SWLSEGSVSKLSVG Trigger: TCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAAACTTAGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |
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CDS TCA 72 bp | AAGCTTCCTCTTACTAAGTTTTGTAAGGTCATCAAATaGCGTGTCCAAAATCTCGTTGTCCTGGCTTTCCGA | + |
Preference number: 6 (lower is better) Translates to: KLPLTKFCKVIK*RVQNLVVLAFR Trigger: TCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAAACTTAGTAAGAGGAAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062672.7 |