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Pregenerated sensors for RPP38 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049950

Ensembl transcript IDs: ENSMUST00000062672.7

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TCCTGGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTGGGACCTTaGGTTCTGTCTGGAAGCCATGGCACGTTTAAGCTGGGCACCCTG +
Preference number: 5 (lower is better)
Translates to: SWLSEGSVSKLSVGP*VLSGSHGTFKLGTL
Trigger: CAGGGTGCCCAGCTTAAACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS CCA 90 bp TCTCGTTGTCCTGGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTaGGACCTTGGGTTCTGTCTGGAAGCCATGGCACGTTTAAGCTGG +
Preference number: 5 (lower is better)
Translates to: SRCPGFPRVQSLNCL*DLGFCLEAMARLSW
Trigger: CCAGCTTAAACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS TCA 90 bp AACACCAATGACCAGCTGTTTCCTGACGTGTACAGGTGTCCACCCTaGCACCAGCACATCCCCATCAGGCTCTTTTGGATCCTCGCTAAT +
Preference number: 5 (lower is better)
Translates to: NTNDQLFPDVYRCPP*HQHIPIRLFWILAN
Trigger: ATTAGCGAGGATCCAAAAGAGCCTGATGGGGATGTGCTGGTGTCAGGGTGGACACCTGTACACGTCAGGAAACAGCTGGTCATTGGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS CCA 90 bp AGTTTTGTAAGGTCATCAAATGACGTGTCCAAAATCTCGTTGTCCTaGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTGGGACCTTGG +
Preference number: 5 (lower is better)
Translates to: SFVRSSNDVSKISLS*LSEGSVSKLSVGPW
Trigger: CCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS TCA 90 bp ACCTTCAGCAAGCTTCCTCTTACTAAGTTTTGTAAGGTCATCAAATaGCGTGTCCAAAATCTCGTTGTCCTGGCTTTCCGAGGGTTCAGT +
Preference number: 5 (lower is better)
Translates to: TFSKLPLTKFCKVIK*RVQNLVVLAFRGFS
Trigger: ACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAAACTTAGTAAGAGGAAGCTTGCTGAAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS TCA 72 bp GACCAGCTGTTTCCTGACGTGTACAGGTGTCCACCCTaGCACCAGCACATCCCCATCAGGCTCTTTTGGATC +
Preference number: 6 (lower is better)
Translates to: DQLFPDVYRCPP*HQHIPIRLFWI
Trigger: GATCCAAAAGAGCCTGATGGGGATGTGCTGGTGTCAGGGTGGACACCTGTACACGTCAGGAAACAGCTGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS CCA 72 bp CCTGGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTaGGACCTTGGGTTCTGTCTGGAAGCCATGGCACGT +
Preference number: 6 (lower is better)
Translates to: PGFPRVQSLNCL*DLGFCLEAMAR
Trigger: ACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS CCA 72 bp TCCGAGGGTTCAGTCTCTAAACTGTCTGTGGGACCTTaGGTTCTGTCTGGAAGCCATGGCACGTTTAAGCTG +
Preference number: 6 (lower is better)
Translates to: SEGSVSKLSVGP*VLSGSHGTFKL
Trigger: CAGCTTAAACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCCACAGACAGTTTAGAGACTGAACCCTCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS CCA 72 bp AGGTCATCAAATGACGTGTCCAAAATCTCGTTGTCCTaGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTG +
Preference number: 6 (lower is better)
Translates to: RSSNDVSKISLS*LSEGSVSKLSV
Trigger: CACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS CAA 72 bp TTTGTAAGGTCATCAAATGACGTGTCCAAAATCTCGTaGTCCTGGCTTTCCGAGGGTTCAGTCTCTAAACTG +
Preference number: 6 (lower is better)
Translates to: FVRSSNDVSKIS*SWLSEGSVSKL
Trigger: CAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS CAA 90 bp TTACTAAGTTTTGTAAGGTCATCAAATGACGTGTCCAAAATCTCGTaGTCCTGGCTTTCCGAGGGTTCAGTCTCTAAACTGTCTGTGGGA +
Preference number: 6 (lower is better)
Translates to: LLSFVRSSNDVSKIS*SWLSEGSVSKLSVG
Trigger: TCCCACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAAACTTAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7
CDS TCA 72 bp AAGCTTCCTCTTACTAAGTTTTGTAAGGTCATCAAATaGCGTGTCCAAAATCTCGTTGTCCTGGCTTTCCGA +
Preference number: 6 (lower is better)
Translates to: KLPLTKFCKVIK*RVQNLVVLAFR
Trigger: TCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACCTTACAAAACTTAGTAAGAGGAAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062672.7