Pregenerated sensors for RPP25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062309Ensembl transcript IDs: ENSMUST00000080514.9
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTCCTGAGCTCTCTCCTGTCGCCTTGGGATCCGCGCTGTCATTCTaGGGACCGGTGTCCAGGAACATGGGCCCCTTAAAACCCAGGTAT | + |
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Preference number: 1 (lower is better) Translates to: IPELSPVALGSALSF*GPVSRNMGPLKPRY Trigger: ATACCTGGGTTTTAAGGGGCCCATGTTCCTGGACACCGGTCCTCAGAATGACAGCGCGGATCCCAAGGCGACAGGAGAGAGCTCAGGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR CCA 90 bp | TTCAAGGATCCTCTCTTCTCATTCCTGAGCTCTCTCCTGTCGCCTTaGGATCCGCGCTGTCATTCTGAGGACCGGTGTCCAGGAACATGG | + |
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Preference number: 1 (lower is better) Translates to: FKDPLFSFLSSLLSP*DPRCHSEDRCPGTW Trigger: CCATGTTCCTGGACACCGGTCCTCAGAATGACAGCGCGGATCCCAAGGCGACAGGAGAGAGCTCAGGAATGAGAAGAGAGGATCCTTGAA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR TCA 90 bp | CCCACAAAGTTTCCTTGGACTTCAAGGATCCTCTCTTCTCATTCCTaGGCTCTCTCCTGTCGCCTTGGGATCCGCGCTGTCATTCTGAGG | + |
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Preference number: 1 (lower is better) Translates to: PTKFPWTSRILSSHS*ALSCRLGIRAVILR Trigger: CCTCAGAATGACAGCGCGGATCCCAAGGCGACAGGAGAGAGCTCAGGAATGAGAAGAGAGGATCCTTGAAGTCCAAGGAAACTTTGTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR-3UTR CCA 90 bp | TCAGCCATCATGCAAGGCGGGTGGGGGAGGGATGCTAAAAGGGAATTGCTAGGGGTGGGTGGTGTTCTGTaGCTTCTGGTAACATGTCCC | + |
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Preference number: 2 (lower is better) Translates to: SAIMQGGWGRDAKRELLGVGGVL*LLVTCP Trigger: GGGACATGTTACCAGAAGCCACAGAACACCACCCAC...CCCTAGCAATTCCCTTTTAGCATCCCTCCCCCACCCGCCTTGCATGATGGCTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR-3UTR CCA 90 bp | AGGGAATTGCTAGGGTGTGTGTGTGTGTGGGGGTGCAGAATAGGGTCCGGACATGGCCTAGCAAAGGTGTaGGTGGTGTTCTGTGGCTTC | + |
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Preference number: 2 (lower is better) Translates to: RELLGCVCVWGCRIGSGHGLAKV*VVFCGF Trigger: GAAGCCACAGAACACCACCCACACCTTTGCTAGGCC...ATGTCCGGACCCTATTCTGCACCCCCACACACACACACACCCTAGCAATTCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR CAA 90 bp | GGGTGGTGTTCTGTGGCTTCTGGTAACATGTCCCACAAAGTTTCCTaGGACTTCAAGGATCCTCTCTTCTCATTCCTGAGCTCTCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: GWCSVASGNMSHKVS*DFKDPLFSFLSSLL Trigger: CAGGAGAGAGCTCAGGAATGAGAAGAGAGGATCCTTGAAGTCCAAGGAAACTTTGTGGGACATGTTACCAGAAGCCACAGAACACCACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR-3UTR CCA 90 bp | GCTAGGGTGTGTGTGTGTGTGGGGGTGCAGAATAGGGTCCGGACATTTTCAACTCCCACAAAGTTTCCTTaGACTTCAAGGATCCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: ARVCVCVGVQNRVRTFSTPTKFP*TSRILS Trigger: AGAGAGGATCCTTGAAGTCCAAGGAAACTTTGTGGG...AGTTGAAAATGTCCGGACCCTATTCTGCACCCCCACACACACACACACCCTAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR CAA 90 bp | AACCCAGGTATGAAAGGTGCGTGTGTTGAAAGGTATGCAGGAGTGTaGAAGATATATGATTCAGTCGGTCTGGGTGGCTCAGAGGCGAGA | + |
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Preference number: 2 (lower is better) Translates to: NPGMKGACVERYAGV*KIYDSVGLGGSEAR Trigger: TCTCGCCTCTGAGCCACCCAGACCGACTGAATCATATATCTTCAACACTCCTGCATACCTTTCAACACACGCACCTTTCATACCTGGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR CCA 72 bp | CCTCTCTTCTCATTCCTGAGCTCTCTCCTGTCGCCTTaGGATCCGCGCTGTCATTCTGAGGACCGGTGTCCA | + |
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Preference number: 3 (lower is better) Translates to: PLFSFLSSLLSP*DPRCHSEDRCP Trigger: TGGACACCGGTCCTCAGAATGACAGCGCGGATCCCAAGGCGACAGGAGAGAGCTCAGGAATGAGAAGAGAGG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR-3UTR CAA 90 bp | TTTGTCCTAAGTCCCCTCTCAGCCATCATGCAAGGCGGGTGGGGGAGGGATGCTTCCCACAAAGTTTCCTaGGACTTCAAGGATCCTCTC | + |
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Preference number: 3 (lower is better) Translates to: FVLSPLSAIMQGGWGRDASHKVS*DFKDPL Trigger: GAGAGGATCCTTGAAGTCCAAGGAAACTTTGTGGGA...AGCATCCCTCCCCCACCCGCCTTGCATGATGGCTGAGAGGGGACTTAGGACAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR TCA 72 bp | TTTCCTTGGACTTCAAGGATCCTCTCTTCTCATTCCTaGGCTCTCTCCTGTCGCCTTGGGATCCGCGCTGTC | + |
|
Preference number: 3 (lower is better) Translates to: FPWTSRILSSHS*ALSCRLGIRAV Trigger: GACAGCGCGGATCCCAAGGCGACAGGAGAGAGCTCAGGAATGAGAAGAGAGGATCCTTGAAGTCCAAGGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| 3UTR TCA 72 bp | GGTGTCCAGGAACATGGGCCCCTTAAAACCCAGGTATaGAAGGTGCGTGTGTTGAAAGGTATGCAGGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: GVQEHGPLKTQV*KVRVLKGMQEC Trigger: ACACTCCTGCATACCTTTCAACACACGCACCTTTCATACCTGGGTTTTAAGGGGCCCATGTTCCTGGACACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR GCA 90 bp | GTCCTAAGTCCCCTCTCAGCCATCATGCAAGGCGGGTGGGGGAGGGATGCTAAACCAGGCGGGAGGCTCTaGCACACCTCGCGCACGCTC | + |
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Preference number: 4 (lower is better) Translates to: VLSPLSAIMQGGWGRDAKPGGRL*HTSRTL Trigger: GAGCGTGCGCGAGGTGTGGCAGAGCCTCCCGCCTGG...TTTAGCATCCCTCCCCCACCCGCCTTGCATGATGGCTGAGAGGGGACTTAGGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | TTTGTCCTAAGTCCCCTCTCAGCCATCATGCAAGGCGGGTGGGGGAGGGATGCTGCGCCATGCTGGCGGTaGCGAAGGCCAGTAGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: FVLSPLSAIMQGGWGRDAAPCWR*RRPVGC Trigger: GCAACCTACTGGCCTTCGCCACCGCCAGCATGGCGC...AGCATCCCTCCCCCACCCGCCTTGCATGATGGCTGAGAGGGGACTTAGGACAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | AGGGAATTGCTAGGGTGTGTGTGTGTGTGGGGGTGCAGAATAGGGTCCGGACATGCGTCTGACCCGGTGTaGGCCCAGGCGGGAGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: RELLGCVCVWGCRIGSGHASDPV*AQAGGS Trigger: AGAGCCTCCCGCCTGGGCCCACACCGGGTCAGACGC...ATGTCCGGACCCTATTCTGCACCCCCACACACACACACACCCTAGCAATTCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | TGTGTGTGTGTGGGGGTGCAGAATAGGGTCCGGACATTTTCAACTTGGCCATCCCGCAGCCGCGTGACCTaGTGTAAGCCCGCCAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: CVCVGVQNRVRTFSTWPSRSRVT*CKPARR Trigger: CCGCCTGGCGGGCTTACACCAGGTCACGCGGCTGCG...GGATGGCCAAGTTGAAAATGTCCGGACCCTATTCTGCACCCCCACACACACACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR TCA 90 bp | GTCCCACAAAGTTTCCTTGGACTTCAAGGATCCTCTCTTCTCATTCCTGAGCTCCCCGGCCGCAGCCACTaGAGACGATGGCGCGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: VPQSFLGLQGSSLLIPELPGRSH*RRWRAW Trigger: CCACGCGCGCCATCGTCTTCAGTGGCTGCGGCCGGG...GAGCTCAGGAATGAGAAGAGAGGATCCTTGAAGTCCAAGGAAACTTTGTGGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR GCA 90 bp | AGCATCCATGCATACTGGGTGCTTTTAACGTCTGGGTCCCCAAGAAAGCTCAAGTGGCTGGCTGCGCCATaGTGGCGGTGGCGAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SIHAYWVLLTSGSPRKLKWLAAP*WRWRRP Trigger: TGGCCTTCGCCACCGCCAGCATGGCGCAGCCAGCCA...CTTGAGCTTTCTTGGGGACCCAGACGTTAAAAGCACCCAGTATGCATGGATGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | GAAAGGTATGCAGGAGTGTTGAAGATATATGATTCAGTCGGTCTGGGTGGCTCATGGCGGCCGGATCGCTaGGCGTCTGACCCGGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: ERYAGVLKIYDSVGLGGSWRPDR*ASDPVW Trigger: CCACACCGGGTCAGACGCCCAGCGATCCGGCCGCCA...TGAGCCACCCAGACCGACTGAATCATATATCTTCAACACTCCTGCATACCTTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | CCTCTCTTCTCATTCCTGAGCTCTCTCCTGTCGCCTTGGGATCCGCGCTGTCATCTCATTCTCAGCCTCTaGCTCAGGCTGAGACCGCTT | + |
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Preference number: 4 (lower is better) Translates to: PLFSFLSSLLSPWDPRCHLILSL*LRLRPL Trigger: AAGCGGTCTCAGCCTGAGCCAGAGGCTGAGAATGAG...ATGACAGCGCGGATCCCAAGGCGACAGGAGAGAGCTCAGGAATGAGAAGAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR TCA 90 bp | GTCCCACAAAGTTTCCTTGGACTTCAAGGATCCTCTCTTCTCATTCCTGAGCTCGAATCTCGGCGCACGTaGCGGTCTTGGTGGTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: VPQSFLGLQGSSLLIPELESRRT*RSWWWP Trigger: GGGCCACCACCAAGACCGTCACGTGCGCCGAGATTC...GAGCTCAGGAATGAGAAGAGAGGATCCTTGAAGTCCAAGGAAACTTTGTGGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR TCA 90 bp | GAAAGGTATGCAGGAGTGTTGAAGATATATGATTCAGTCGGTCTGGGTGGCTCAGGTAGCGCAGCCGCGTaGCCTGGTGTAAGCCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: ERYAGVLKIYDSVGLGGSGSAAA*PGVSPP Trigger: TGGCGGGCTTACACCAGGTCACGCGGCTGCGCTACC...TGAGCCACCCAGACCGACTGAATCATATATCTTCAACACTCCTGCATACCTTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR TCA 90 bp | AGCAAAGGTGTGGGTGGTGTTCTGTGGCTTCTGGTAACATGTCCCACAAAGTTTGCCTCTGGCTCAGGCTaGGACCGCTTAGCGGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SKGVGGVLWLLVTCPTKFASGSG*DRLAVP Trigger: AGGCACCGCTAAGCGGTCTCAGCCTGAGCCAGAGGC...AAACTTTGTGGGACATGTTACCAGAAGCCACAGAACACCACCCACACCTTTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR GCA 90 bp | GCTAGGGTGTGTGTGTGTGTGGGGGTGCAGAATAGGGTCCGGACATTTTCAACTCGAAGGCCAGTAGGTTaGGGATCTTGCTGCCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: ARVCVCVGVQNRVRTFSTRRPVG*GSCCPP Trigger: AGGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCG...AGTTGAAAATGTCCGGACCCTATTCTGCACCCCCACACACACACACACCCTAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | GTCCCACAAAGTTTCCTTGGACTTCAAGGATCCTCTCTTCTCATTCCTGAGCTCCTGGCTGCGCCATGCTaGCGGTGGCGAAGGCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: VPQSFLGLQGSSLLIPELLAAPC*RWRRPV Trigger: TACTGGCCTTCGCCACCGCCAGCATGGCGCAGCCAG...GAGCTCAGGAATGAGAAGAGAGGATCCTTGAAGTCCAAGGAAACTTTGTGGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | AACATGTCCCACAAAGTTTCCTTGGACTTCAAGGATCCTCTCTTCTCATTCCTGGATGGCGCGCGTGGCTaGCTGCGCCATGCTGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: NMSHKVSLDFKDPLFSFLDGARG*LRHAGG Trigger: ACCGCCAGCATGGCGCAGCCAGCCACGCGCGCCATC...CAGGAATGAGAAGAGAGGATCCTTGAAGTCCAAGGAAACTTTGTGGGACATGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | CCTCTCTTCTCATTCCTGAGCTCTCTCCTGTCGCCTTGGGATCCGCGCTGTCATCCTTTGAAAGTAGGATaGCGAGGCTCGGTACATTCT | + |
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Preference number: 4 (lower is better) Translates to: PLFSFLSSLLSPWDPRCHPLKVG*RGSVHS Trigger: AGAATGTACCGAGCCTCGCCATCCTACTTTCAAAGG...ATGACAGCGCGGATCCCAAGGCGACAGGAGAGAGCTCAGGAATGAGAAGAGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CCA 90 bp | GGTATGAAAGGTGCGTGTGTTGAAAGGTATGCAGGAGTGTTGAAGATATATGATAGACGATGGCGCGCGTaGCTGGCTGCGCCATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GMKGACVERYAGVLKIYDRRWRA*LAAPCW Trigger: CCAGCATGGCGCAGCCAGCCACGCGCGCCATCGTCT...ATCATATATCTTCAACACTCCTGCATACCTTTCAACACACGCACCTTTCATACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS GCA 90 bp | GTGGCCCGGCCGCAGCCACTGAAGACGATGGCGCGCGTGGCTGGCTaGGCCATGCTGGCGGTGGCGAAGGCCAGTAGGTTGCGGATCTTG | + |
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Preference number: 5 (lower is better) Translates to: VARPQPLKTMARVAG*AMLAVAKASRLRIL Trigger: CAAGATCCGCAACCTACTGGCCTTCGCCACCGCCAGCATGGCGCAGCCAGCCACGCGCGCCATCGTCTTCAGTGGCTGCGGCCGGGCCAC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS TCA 90 bp | ACATTCTTAAGTACACTGAGACTGGCGGCCGGATCGCTGGGCGTCTaGCCCGGTGTGGGCCCAGGCGGGAGGCTCTGCCACACCTCGCGC | + |
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Preference number: 5 (lower is better) Translates to: TFLSTLRLAAGSLGV*PGVGPGGRLCHTSR Trigger: GCGCGAGGTGTGGCAGAGCCTCCCGCCTGGGCCCACACCGGGTCAGACGCCCAGCGATCCGGCCGCCAGTCTCAGTGTACTTAAGAATGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS GCA 90 bp | GCTGCCCTCCTTGACCCGCATGTGTACAGCACCGGGTGCCAGATCTaGAAAAGGGCCAGAGTTCGGGCTGCCACCCTCATCACCGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: AALLDPHVYSTGCQI*KRARVRAATLITVP Trigger: GGGGACGGTGATGAGGGTGGCAGCCCGAACTCTGGCCCTTTTGCAGATCTGGCACCCGGTGCTGTACACATGCGGGTCAAGGAGGGCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS TCA 90 bp | TGGCGGTGGCGAAGGCCAGTAGGTTGCGGATCTTGCTGCCCTCCTTaGCCCGCATGTGTACAGCACCGGGTGCCAGATCTGCAAAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: WRWRRPVGCGSCCPP*PACVQHRVPDLQKG Trigger: GCCCTTTTGCAGATCTGGCACCCGGTGCTGTACACATGCGGGTCAAGGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCGCCACCGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS GCA 90 bp | GCGGATCTTGCTGCCCTCCTTGACCCGCATGTGTACAGCACCGGGTaGCAGATCTGCAAAAGGGCCAGAGTTCGGGCTGCCACCCTCATC | + |
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Preference number: 5 (lower is better) Translates to: ADLAALLDPHVYSTG*QICKRARVRAATLI Trigger: GATGAGGGTGGCAGCCCGAACTCTGGCCCTTTTGCAGATCTGGCACCCGGTGCTGTACACATGCGGGTCAAGGAGGGCAGCAAGATCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CAA 90 bp | GCCATCATGCAAGGCGGGTGGGGGAGGGATGCTAAAAGGGAATTGCTAGGGTGTAGTAGGTTGCGGATCTaGCTGCCCTCCTTGACCCGC | + |
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Preference number: 5 (lower is better) Translates to: AIMQGGWGRDAKRELLGCSRLRI*LPSLTR Trigger: GCGGGTCAAGGAGGGCAGCAAGATCCGCAACCTACT...ACACCCTAGCAATTCCCTTTTAGCATCCCTCCCCCACCCGCCTTGCATGATGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CAA 90 bp | GAAAGGTATGCAGGAGTGTTGAAGATATATGATTCAGTCGGTCTGGGTGGCTCAGCGCACGTGACGGTCTaGGTGGTGGCCCGGCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: ERYAGVLKIYDSVGLGGSAHVTV*VVARPQ Trigger: CTGCGGCCGGGCCACCACCAAGACCGTCACGTGCGC...TGAGCCACCCAGACCGACTGAATCATATATCTTCAACACTCCTGCATACCTTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CAA 90 bp | GGACCGGTGTCCAGGAACATGGGCCCCTTAAAACCCAGGTATGAAAGGTGCGTGATCTTGCTGCCCTCCTaGACCCGCATGTGTACAGCA | + |
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Preference number: 5 (lower is better) Translates to: GPVSRNMGPLKPRYERCVILLPS*TRMCTA Trigger: TGCTGTACACATGCGGGTCAAGGAGGGCAGCAAGAT...CACGCACCTTTCATACCTGGGTTTTAAGGGGCCCATGTTCCTGGACACCGGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CAA 90 bp | TGGTGTTCTGTGGCTTCTGGTAACATGTCCCACAAAGTTTCCTTGGACTTCAAGCCCGCCAGGCGGCGCTaGAGAATCTCGGCGCACGTG | + |
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Preference number: 5 (lower is better) Translates to: WCSVASGNMSHKVSLDFKPARRR*RISAHV Trigger: CACGTGCGCCGAGATTCTCAAGCGCCGCCTGGCGGG...CTTGAAGTCCAAGGAAACTTTGTGGGACATGTTACCAGAAGCCACAGAACACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CAA 90 bp | TCAGCCATCATGCAAGGCGGGTGGGGGAGGGATGCTAAAAGGGAATTGCTAGGGGATCCAGTGCGTCCTTaGAAAGTAGGATGGCGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SAIMQGGWGRDAKRELLGDPVRP*KVGWRG Trigger: GCCTCGCCATCCTACTTTCAAAGGACGCACTGGATC...CCCTAGCAATTCCCTTTTAGCATCCCTCCCCCACCCGCCTTGCATGATGGCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CAA 90 bp | TCTCTTCTCATTCCTGAGCTCTCTCCTGTCGCCTTGGGATCCGCGCTGTCATTCAGGCTGGTAGCCAAGTaGTCGTGGATCCAGTGCGTC | + |
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Preference number: 5 (lower is better) Translates to: SLLIPELSPVALGSALSFRLVAK*SWIQCV Trigger: GACGCACTGGATCCACGACAACTTGGCTACCAGCCT...GAATGACAGCGCGGATCCCAAGGCGACAGGAGAGAGCTCAGGAATGAGAAGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS-3UTR CAA 90 bp | AGCAAAGGTGTGGGTGGTGTTCTGTGGCTTCTGGTAACATGTCCCACAAAGTTTGCGAAGGCCAGTAGGTaGCGGATCTTGCTGCCCTCC | + |
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Preference number: 5 (lower is better) Translates to: SKGVGGVLWLLVTCPTKFAKASR*RILLPS Trigger: GGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCGC...AAACTTTGTGGGACATGTTACCAGAAGCCACAGAACACCACCCACACCTTTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CCA 72 bp | GACTGGCGGCCGGATCGCTGGGCGTCTGACCCGGTGTaGGCCCAGGCGGGAGGCTCTGCCACACCTCGCGCA | + |
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Preference number: 6 (lower is better) Translates to: DWRPDRWASDPV*AQAGGSATPRA Trigger: TGCGCGAGGTGTGGCAGAGCCTCCCGCCTGGGCCCACACCGGGTCAGACGCCCAGCGATCCGGCCGCCAGTC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS TCA 72 bp | AGTACACTGAGACTGGCGGCCGGATCGCTGGGCGTCTaGCCCGGTGTGGGCCCAGGCGGGAGGCTCTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: STLRLAAGSLGV*PGVGPGGRLCH Trigger: GTGGCAGAGCCTCCCGCCTGGGCCCACACCGGGTCAGACGCCCAGCGATCCGGCCGCCAGTCTCAGTGTACT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CAA 90 bp | AAGCCCGCCAGGCGGCGCTTGAGAATCTCGGCGCACGTGACGGTCTaGGTGGTGGCCCGGCCGCAGCCACTGAAGACGATGGCGCGCGTG | + |
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Preference number: 6 (lower is better) Translates to: KPARRRLRISAHVTV*VVARPQPLKTMARV Trigger: CACGCGCGCCATCGTCTTCAGTGGCTGCGGCCGGGCCACCACCAAGACCGTCACGTGCGCCGAGATTCTCAAGCGCCGCCTGGCGGGCTT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS GCA 72 bp | CCGCAGCCACTGAAGACGATGGCGCGCGTGGCTGGCTaGGCCATGCTGGCGGTGGCGAAGGCCAGTAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: PQPLKTMARVAG*AMLAVAKASRL Trigger: CAACCTACTGGCCTTCGCCACCGCCAGCATGGCGCAGCCAGCCACGCGCGCCATCGTCTTCAGTGGCTGCGG 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CAA 72 bp | AGGCGGCGCTTGAGAATCTCGGCGCACGTGACGGTCTaGGTGGTGGCCCGGCCGCAGCCACTGAAGACGATG | + |
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Preference number: 6 (lower is better) Translates to: RRRLRISAHVTV*VVARPQPLKTM Trigger: CATCGTCTTCAGTGGCTGCGGCCGGGCCACCACCAAGACCGTCACGTGCGCCGAGATTCTCAAGCGCCGCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CAA 72 bp | AGCCGCGTGACCTGGTGTAAGCCCGCCAGGCGGCGCTaGAGAATCTCGGCGCACGTGACGGTCTTGGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: SRVTWCKPARRR*RISAHVTVLVV Trigger: CACCACCAAGACCGTCACGTGCGCCGAGATTCTCAAGCGCCGCCTGGCGGGCTTACACCAGGTCACGCGGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CAA 90 bp | GGCTGCGCCATGCTGGCGGTGGCGAAGGCCAGTAGGTTGCGGATCTaGCTGCCCTCCTTGACCCGCATGTGTACAGCACCGGGTGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: GCAMLAVAKASRLRI*LPSLTRMCTAPGAR Trigger: TCTGGCACCCGGTGCTGTACACATGCGGGTCAAGGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCGCCACCGCCAGCATGGCGCAGCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CAA 72 bp | GGCTGCGCCATGCTGGCGGTGGCGAAGGCCAGTAGGTaGCGGATCTTGCTGCCCTCCTTGACCCGCATGTGT | + |
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Preference number: 6 (lower is better) Translates to: GCAMLAVAKASR*RILLPSLTRMC Trigger: ACACATGCGGGTCAAGGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCGCCACCGCCAGCATGGCGCAGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS GCA 72 bp | GCTGCCCTCCTTGACCCGCATGTGTACAGCACCGGGTaGCAGATCTGCAAAAGGGCCAGAGTTCGGGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: AALLDPHVYSTG*QICKRARVRAA Trigger: GGCAGCCCGAACTCTGGCCCTTTTGCAGATCTGGCACCCGGTGCTGTACACATGCGGGTCAAGGAGGGCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CAA 90 bp | CTGGCGGTGGCGAAGGCCAGTAGGTTGCGGATCTTGCTGCCCTCCTaGACCCGCATGTGTACAGCACCGGGTGCCAGATCTGCAAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: LAVAKASRLRILLPS*TRMCTAPGARSAKG Trigger: CCCTTTTGCAGATCTGGCACCCGGTGCTGTACACATGCGGGTCAAGGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCGCCACCGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CAA 72 bp | ATGCTGGCGGTGGCGAAGGCCAGTAGGTTGCGGATCTaGCTGCCCTCCTTGACCCGCATGTGTACAGCACCG | + |
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Preference number: 6 (lower is better) Translates to: MLAVAKASRLRI*LPSLTRMCTAP Trigger: CGGTGCTGTACACATGCGGGTCAAGGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCGCCACCGCCAGCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS TCA 72 bp | CGAAGGCCAGTAGGTTGCGGATCTTGCTGCCCTCCTTaGCCCGCATGTGTACAGCACCGGGTGCCAGATCTG | + |
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Preference number: 6 (lower is better) Translates to: RRPVGCGSCCPP*PACVQHRVPDL Trigger: CAGATCTGGCACCCGGTGCTGTACACATGCGGGTCAAGGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS GCA 72 bp | CTTGACCCGCATGTGTACAGCACCGGGTGCCAGATCTaGAAAAGGGCCAGAGTTCGGGCTGCCACCCTCATC | + |
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Preference number: 6 (lower is better) Translates to: LDPHVYSTGCQI*KRARVRAATLI Trigger: GATGAGGGTGGCAGCCCGAACTCTGGCCCTTTTGCAGATCTGGCACCCGGTGCTGTACACATGCGGGTCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS CAA 72 bp | GCGAAGGCCAGTAGGTTGCGGATCTTGCTGCCCTCCTaGACCCGCATGTGTACAGCACCGGGTGCCAGATCT | + |
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Preference number: 6 (lower is better) Translates to: AKASRLRILLPS*TRMCTAPGARS Trigger: AGATCTGGCACCCGGTGCTGTACACATGCGGGTCAAGGAGGGCAGCAAGATCCGCAACCTACTGGCCTTCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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| CDS TCA 72 bp | GCGGTCCTGTCCTCATTCTCAGCCTCTGGCTCAGGCTaGGACCGCTTAGCGGTGCCTTCTTCAGCAGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: AVLSSFSASGSG*DRLAVPSSAAD Trigger: ATCTGCTGCTGAAGAAGGCACCGCTAAGCGGTCTCAGCCTGAGCCAGAGGCTGAGAATGAGGACAGGACCGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080514.9 |
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