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Pregenerated sensors for RPP21 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024446

Ensembl transcript IDs: ENSMUST00000025319.7, ENSMUST00000077535.5, ENSMUST00000172573.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACAGAACACAAAGTCAAACAACTCAACTTTATTTATCTGGCAAGTaGAGTGAAGTCATTCACTGGTGTTCAAAGCCTGAGTCTGAATGT +
Preference number: 1 (lower is better)
Translates to: HRTQSQTTQLYLSGK*SEVIHWCSKPESEC
Trigger: ACATTCAGACTCAGGCTTTGAACACCAGTGAATGACTTCACTCCACTTGCCAGATAAATAAAGTTGAGTTGTTTGACTTTGTGTTCTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000077535.5
3UTR-3UTR TCA 90 bp CAGTTGAGATACCACAGAACACAAAGTCAAACAACTCAACTTTATTTATCTGGCGGGGCTCTGATGGATTaGTGTCTGCCTGATTTTCCA +
Preference number: 2 (lower is better)
Translates to: QLRYHRTQSQTTQLYLSGGALMD*CLPDFP
Trigger: TGGAAAATCAGGCAGACATCAATCCATCAGAGCCCC...GCCAGATAAATAAAGTTGAGTTGTTTGACTTTGTGTTCTGTGGTATCTCAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000077535.5
3UTR TCA 72 bp GGAGGTCAGCTATGTTTGGCAGGGGCTCTGATGGATTaGTGTCTGCCTGATTTTCCAGCTGGGCTTCAGGCC +
Preference number: 3 (lower is better)
Translates to: GGQLCLAGALMD*CLPDFPAGLQA
Trigger: GGCCTGAAGCCCAGCTGGAAAATCAGGCAGACATCAATCCATCAGAGCCCCTGCCAAACATAGCTGACCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077535.5
ENSMUST00000172573.2
3UTR CCA 72 bp CTTTATTTATCTGGCAAGTGGAGTGAAGTCATTCACTaGTGTTCAAAGCCTGAGTCTGAATGTTCTCTTTGG +
Preference number: 3 (lower is better)
Translates to: LYLSGKWSEVIH*CSKPESECSLW
Trigger: CCAAAGAGAACATTCAGACTCAGGCTTTGAACACCAGTGAATGACTTCACTCCACTTGCCAGATAAATAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000077535.5
CDS-3UTR GCA 90 bp CAGCTGGGCTTCAGGCCGGTCACCCCAGAGCAGATGCTTAGGGTCGTTGAGGAAGGAGAGAGGAGCAGCTaGGACAGAGCGTCCTCTTCA +
Preference number: 4 (lower is better)
Translates to: QLGFRPVTPEQMLRVVEEGERSS*DRASSS
Trigger: TGAAGAGGACGCTCTGTCGCAGCTGCTCCTCTCTCC...TTCCTCAACGACCCTAAGCATCTGCTCTGGGGTGACCGGCCTGAAGCCCAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172573.2
CDS-3UTR CCA 90 bp TGGATTGATGTCTGCCTGATTTTCCAGCTGGGCTTCAGGCCGGTCACCCCAGAGAGGAAGCTGAGTCTCTaGAAGGCTTCCCGGTCCTTC +
Preference number: 4 (lower is better)
Translates to: WIDVCLIFQLGFRPVTPERKLSL*KASRSF
Trigger: GAAGGACCGGGAAGCCTTCCAGAGACTCAGCTTCCT...CTCTGGGGTGACCGGCCTGAAGCCCAGCTGGAAAATCAGGCAGACATCAATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000077535.5
CDS-3UTR CCA 90 bp TGGTGTTCAAAGCCTGAGTCTGAATGTTCTCTTTGGGGAGGTCAGCTATGTTTGCCCTTTCGGCGTCTCTaGCGCTGCGTGCAGGTGAGG +
Preference number: 4 (lower is better)
Translates to: WCSKPESECSLWGGQLCLPFRRL*RCVQVR
Trigger: CCTCACCTGCACGCAGCGCCAGAGACGCCGAAAGGG...CAAACATAGCTGACCTCCCCAAAGAGAACATTCAGACTCAGGCTTTGAACACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077535.5
CDS-3UTR TCA 90 bp GGTGTTCAAAGCCTGAGTCTGAATGTTCTCTTTGGGGAGGTCAGCTATGTTTGGCCTGGTACAGGAAGCTaGGTCTCTGGAAGGCTTCCC +
Preference number: 4 (lower is better)
Translates to: GVQSLSLNVLFGEVSYVWPGTGS*VSGRLP
Trigger: GGGAAGCCTTCCAGAGACTCAGCTTCCTGTACCAGG...CCAAACATAGCTGACCTCCCCAAAGAGAACATTCAGACTCAGGCTTTGAACACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077535.5
CDS-3UTR GCA 90 bp TGGTGTTCAAAGCCTGAGTCTGAATGTTCTCTTTGGGGAGGTCAGCTATGTTTGGGAGAGAGGAGCAGCTaGGACAGAGCGTCCTCTTCA +
Preference number: 4 (lower is better)
Translates to: WCSKPESECSLWGGQLCLGERSS*DRASSS
Trigger: TGAAGAGGACGCTCTGTCGCAGCTGCTCCTCTCTCC...CAAACATAGCTGACCTCCCCAAAGAGAACATTCAGACTCAGGCTTTGAACACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077535.5
ENSMUST00000172573.2
CDS-3UTR CCA 90 bp GGAGTGAAGTCATTCACTGGTGTTCAAAGCCTGAGTCTGAATGTTCTCTTTGGGTCACAGAGGGGTCCCTaGTACAGGAAGCTGAGTCTC +
Preference number: 4 (lower is better)
Translates to: GVKSFTGVQSLSLNVLFGSQRGP*YRKLSL
Trigger: GAGACTCAGCTTCCTGTACCAGGGACCCCTCTGTGA...CCCAAAGAGAACATTCAGACTCAGGCTTTGAACACCAGTGAATGACTTCACTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077535.5
CDS-3UTR CCA 90 bp GTCATTCACTGGTGTTCAAAGCCTGAGTCTGAATGTTCTCTTTGGGGAGGTCAGCCTCACAAATGTCTCTaGGGCAGCACTCACGTCTCT +
Preference number: 4 (lower is better)
Translates to: VIHWCSKPESECSLWGGQPHKCL*GSTHVS
Trigger: AGAGACGTGAGTGCTGCCCCAGAGACATTTGTGAGG...CTGACCTCCCCAAAGAGAACATTCAGACTCAGGCTTTGAACACCAGTGAATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172573.2
CDS CCA 90 bp GGCCGGTCACCCCAGAGCAGATGCTTAGGGTCGTTGAGGAATCTCTaGCTCCGCTGGCATGTCAGACAGGTCTGTACTGTCCAGCGCTGT +
Preference number: 5 (lower is better)
Translates to: GRSPQSRCLGSLRNL*LRWHVRQVCTVQRC
Trigger: ACAGCGCTGGACAGTACAGACCTGTCTGACATGCCAGCGGAGCCAGAGATTCCTCAACGACCCTAAGCATCTGCTCTGGGGTGACCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025319.7
CDS CCA 90 bp CCCCAGAGCAGATGCTTAGGGTCGTTGAGGAATCTCTGGCTCCGCTaGCATGTCAGACAGGTCTGTACTGTCCAGCGCTGTCCCTTTCGG +
Preference number: 5 (lower is better)
Translates to: PQSRCLGSLRNLWLR*HVRQVCTVQRCPFR
Trigger: CCGAAAGGGACAGCGCTGGACAGTACAGACCTGTCTGACATGCCAGCGGAGCCAGAGATTCCTCAACGACCCTAAGCATCTGCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025319.7
CDS TCA 72 bp GAGAGAGGACGCAGTGTGCAGCCTGGTACAGGAAGCTaGGTCTCTGGAAGGCTTCCCGGTCCTTCACTGGGC +
Preference number: 6 (lower is better)
Translates to: ERGRSVQPGTGS*VSGRLPGPSLG
Trigger: GCCCAGTGAAGGACCGGGAAGCCTTCCAGAGACTCAGCTTCCTGTACCAGGCTGCACACTGCGTCCTCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025319.7
CDS TCA 72 bp CGTCCTCTTCACAGAGGGGTCCCTGGTACAGGAAGCTaGGTCTCTGGAAGGCTTCCCGGTCCTTCACTGGGC +
Preference number: 6 (lower is better)
Translates to: RPLHRGVPGTGS*VSGRLPGPSLG
Trigger: GCCCAGTGAAGGACCGGGAAGCCTTCCAGAGACTCAGCTTCCTGTACCAGGGACCCCTCTGTGAAGAGGACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077535.5
CDS CAA 72 bp TCAGGCCGGTCACCCCAGAGCAGATGCTTAGGGTCGTaGAGGAATCTCTGGCTCCGCTGGCATGTCAGACAG +
Preference number: 6 (lower is better)
Translates to: SGRSPQSRCLGS*RNLWLRWHVRQ
Trigger: CTGTCTGACATGCCAGCGGAGCCAGAGATTCCTCAACGACCCTAAGCATCTGCTCTGGGGTGACCGGCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025319.7
CDS CCA 72 bp CCCCAGAGCAGATGCTTAGGGTCGTTGAGGAATCTCTaGCTCCGCTGGCATGTCAGACAGGTCTGTACTGTC +
Preference number: 6 (lower is better)
Translates to: PQSRCLGSLRNL*LRWHVRQVCTV
Trigger: GACAGTACAGACCTGTCTGACATGCCAGCGGAGCCAGAGATTCCTCAACGACCCTAAGCATCTGCTCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025319.7
CDS CCA 72 bp AGATGCTTAGGGTCGTTGAGGAATCTCTGGCTCCGCTaGCATGTCAGACAGGTCTGTACTGTCCAGCGCTGT +
Preference number: 6 (lower is better)
Translates to: RCLGSLRNLWLR*HVRQVCTVQRC
Trigger: ACAGCGCTGGACAGTACAGACCTGTCTGACATGCCAGCGGAGCCAGAGATTCCTCAACGACCCTAAGCATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025319.7