Pregenerated sensors for RPP14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023156Ensembl transcript IDs: ENSMUST00000023924.4
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAACCATGCACCAATCTGGAAGTCTCCCCTTCCACACACAGCTTCTaGATATACCAGCATTCCTCCAGGAAGAGCAGCAGCCCACCTCCC | + |
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Preference number: 1 (lower is better) Translates to: KPCTNLEVSPSTHSF*IYQHSSRKSSSPPP Trigger: GGGAGGTGGGCTGCTGCTCTTCCTGGAGGAATGCTGGTATATCCAGAAGCTGTGTGTGGAAGGGGAGACTTCCAGATTGGTGCATGGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CCA 90 bp | TCGGTCTCCAACTTTCGTGTGCACATACTGAAAACACTGCCCTGTTaGTACCACATGATGTTGCCACAGTCTCCTCTGAAGCCCACGCCA | + |
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Preference number: 1 (lower is better) Translates to: SVSNFRVHILKTLPC*YHMMLPQSPLKPTP Trigger: TGGCGTGGGCTTCAGAGGAGACTGTGGCAACATCATGTGGTACCAACAGGGCAGTGTTTTCAGTATGTGCACACGAAAGTTGGAGACCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CCA 90 bp | AAGACCACCTCTCCAACATATAGAGGAGCAGGAAATTTAATTTCCTaGGAAAGAAACACACAGCCTGGCCCTGGCATTTTGGTGCCCAGG | + |
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Preference number: 1 (lower is better) Translates to: KTTSPTYRGAGNLIS*ERNTQPGPGILVPR Trigger: CCTGGGCACCAAAATGCCAGGGCCAGGCTGTGTGTTTCTTTCCCAGGAAATTAAATTTCCTGCTCCTCTATATGTTGGAGAGGTGGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR TCA 90 bp | AAGAAACACACAGCCTGGCCCTGGCATTTTGGTGCCCAGGAGAGCTaGAATAAGTCCATTTATCAAAACTCCGTGAACAATTGTCTTTCC | + |
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Preference number: 1 (lower is better) Translates to: KKHTAWPWHFGAQES*NKSIYQNSVNNCLS Trigger: GGAAAGACAATTGTTCACGGAGTTTTGATAAATGGACTTATTTCAGCTCTCCTGGGCACCAAAATGCCAGGGCCAGGCTGTGTGTTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 90 bp | TTACTTTCTATTACACAACAGGACACTGCAACAACAGCAACAGACTaGTTCAGCCTTTTCACTTCTGCAGATGCTAAGACCACCTCTCCA | + |
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Preference number: 1 (lower is better) Translates to: LLSITQQDTATTATD*FSLFTSADAKTTSP Trigger: TGGAGAGGTGGTCTTAGCATCTGCAGAAGTGAAAAGGCTGAAGCAGTCTGTTGCTGTTGTTGCAGTGTCCTGTTGTGTAATAGAAAGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 90 bp | GAAAGGGTCTCAGAATTAGGTGTTCAGAGATGGCTCTACTTGCATTaGTGCAGTTATACTTGCATTGCTGCACTTGGTATACATGGTGGT | + |
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Preference number: 1 (lower is better) Translates to: ERVSELGVQRWLYLH*CSYTCIAALGIHGG Trigger: ACCACCATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTGAACACCTAATTCTGAGACCCTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 90 bp | GCCTTCCATAACTGTCTTCTTACTTTCTATTACACAACAGGACACTaGAACAACAGCAACAGACTGCTTCAGCCTTTTCACTTCTGCAGA | + |
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Preference number: 1 (lower is better) Translates to: AFHNCLLTFYYTTGH*NNSNRLLQPFHFCR Trigger: TCTGCAGAAGTGAAAAGGCTGAAGCAGTCTGTTGCTGTTGTTGCAGTGTCCTGTTGTGTAATAGAAAGTAAGAAGACAGTTATGGAAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 90 bp | AGGGTCTCAGAATTAGGTGTTCAGAGATGGCTCTACTTGCATTGCTaGAGTTATACTTGCATTGCTGCACTTGGTATACATGGTGGTATA | + |
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Preference number: 1 (lower is better) Translates to: RVSELGVQRWLYLHC*SYTCIAALGIHGGI Trigger: TATACCACCATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTGAACACCTAATTCTGAGACCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 90 bp | TGTTCAGAGATGGCTCTACTTGCATTGCTGCAGTTATACTTGCATTaGTGCACTTGGTATACATGGTGGTATAAATCCAGCAAGAAAATC | + |
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Preference number: 1 (lower is better) Translates to: CSEMALLALLQLYLH*CTWYTWWYKSSKKI Trigger: GATTTTCTTGCTGGATTTATACCACCATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTGAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 90 bp | CTCGGTCTCCAACTTTCGTGTGCACATACTGAAAACACTGCCCTGTaGGTACCACATGATGTTGCCACAGTCTCCTCTGAAGCCCACGCC | + |
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Preference number: 2 (lower is better) Translates to: LGLQLSCAHTENTAL*VPHDVATVSSEAHA Trigger: GGCGTGGGCTTCAGAGGAGACTGTGGCAACATCATGTGGTACCAACAGGGCAGTGTTTTCAGTATGTGCACACGAAAGTTGGAGACCGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 90 bp | TGTGTACCATGTGCAGGTAGTTTCGGCACAGGCCAGAAGATGGTGTaGGATCACCTGAGACTGAAGTTACATACAGTTGTGAGCAGCTAT | + |
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Preference number: 2 (lower is better) Translates to: CVPCAGSFGTGQKMV*DHLRLKLHTVVSSY Trigger: ATAGCTGCTCACAACTGTATGTAACTTCAGTCTCAGGTGATCCAACACCATCTTCTGGCCTGTGCCGAAACTACCTGCACATGGTACACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 90 bp | AATTTAATTTCCTGGGAAAGAAACACACAGCCTGGCCCTGGCATTTaGGTGCCCAGGAGAGCTGAAATAAGTCCATTTATCAAAACTCCG | + |
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Preference number: 2 (lower is better) Translates to: NLISWERNTQPGPGI*VPRRAEISPFIKTP Trigger: CGGAGTTTTGATAAATGGACTTATTTCAGCTCTCCTGGGCACCAAAATGCCAGGGCCAGGCTGTGTGTTTCTTTCCCAGGAAATTAAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 90 bp | AGAAAGGGTCTCAGAATTAGGTGTTCAGAGATGGCTCTACTTGCATaGCTGCAGTTATACTTGCATTGCTGCACTTGGTATACATGGTGG | + |
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Preference number: 2 (lower is better) Translates to: RKGLRIRCSEMALLA*LQLYLHCCTWYTWW Trigger: CCACCATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTGAACACCTAATTCTGAGACCCTTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR TCA 90 bp | TCTTCACTTAAATGCAAAGGATTGGCATCTCCCGTTAACTCTGAGAAGGTAGCTTTCGTGTGCACATACTaGAAACACTGCCCTGTTGGT | + |
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Preference number: 2 (lower is better) Translates to: SSLKCKGLASPVNSEKVAFVCTY*KHCPVG Trigger: ACCAACAGGGCAGTGTTTTCAGTATGTGCACACGAA...AGCTACCTTCTCAGAGTTAACGGGAGATGCCAATCCTTTGCATTTAAGTGAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CCA 90 bp | CAAACCATGCACCAATCTGGAAGTCTCCCCTTCCACACACAGCTTCTGGATATATTAAATGCAAAGGATTaGCATCTCCCGTTAACTCTG | + |
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Preference number: 2 (lower is better) Translates to: QTMHQSGSLPFHTQLLDILNAKD*HLPLTL Trigger: CAGAGTTAACGGGAGATGCCAATCCTTTGCATTTAA...TATATCCAGAAGCTGTGTGTGGAAGGGGAGACTTCCAGATTGGTGCATGGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CCA 90 bp | AAGATGGTGTTGGATCACCTGAGACTGAAGTTACATACAGTTGTGAGCAGCTATTCCACACACAGCTTCTaGATATACCAGCATTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: KMVLDHLRLKLHTVVSSYSTHSF*IYQHSS Trigger: GGAGGAATGCTGGTATATCCAGAAGCTGTGTGTGGA...ATAGCTGCTCACAACTGTATGTAACTTCAGTCTCAGGTGATCCAACACCATCTT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR TCA 90 bp | CTCCCCGGGTGTCATTTGATAATAAGAGCACAGGTTTTTAAATGTATAACTTTACCTGTTGGTACCACATaGTGTTGCCACAGTCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: LPGCHLIIRAQVFKCITLPVGTT*CCHSLL Trigger: GAGGAGACTGTGGCAACATCATGTGGTACCAACAGG...TAAAGTTATACATTTAAAAACCTGTGCTCTTATTATCAAATGACACCCGGGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CCA 90 bp | ACTTTAACCCAGCCTTCCATAACTGTCTTCTTACTTTCTATTACACAACAGGACCACCTAAGGACACTGTaGAGAGTGGAAGTATCTGGA | + |
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Preference number: 2 (lower is better) Translates to: TLTQPSITVFLLSITQQDHLRTL*RVEVSG Trigger: TCCAGATACTTCCACTCTCCACAGTGTCCTTAGGTG...GTCCTGTTGTGTAATAGAAAGTAAGAAGACAGTTATGGAAGGCTGGGTTAAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR TCA 90 bp | TGCTGCACTTGGTATACATGGTGGTATAAATCCAGCAAGAAAATCCCTCAACACAGTTACATACAGTTGTaGGCAGCTATGTGGGTATTA | + |
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Preference number: 2 (lower is better) Translates to: CCTWYTWWYKSSKKIPQHSYIQL*AAMWVL Trigger: TAATACCCACATAGCTGCTCACAACTGTATGTAACT...GTGTTGAGGGATTTTCTTGCTGGATTTATACCACCATGTATACCAAGTGCAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CCA 90 bp | TGCTGCACTTGGTATACATGGTGGTATAAATCCAGCAAGAAAATCCCTCAACACGGAAATTTAATTTCCTaGGAAAGAAACACACAGCCT | + |
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Preference number: 2 (lower is better) Translates to: CCTWYTWWYKSSKKIPQHGNLIS*ERNTQP Trigger: AGGCTGTGTGTTTCTTTCCCAGGAAATTAAATTTCC...GTGTTGAGGGATTTTCTTGCTGGATTTATACCACCATGTATACCAAGTGCAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CCA 90 bp | CTCCCCGGGTGTCATTTGATAATAAGAGCACAGGTTTTTAAATGTATAACTTTAAAAACACTGCCCTGTTaGTACCACATGATGTTGCCA | + |
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Preference number: 2 (lower is better) Translates to: LPGCHLIIRAQVFKCITLKTLPC*YHMMLP Trigger: TGGCAACATCATGTGGTACCAACAGGGCAGTGTTTT...TAAAGTTATACATTTAAAAACCTGTGCTCTTATTATCAAATGACACCCGGGGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 90 bp | ACATTCCAGATGCTTTCCTTCGGTTTTAAAATACTAACAAACAGATaGGCCAGCTCTCTGAAAGATCAGCATGTTAACCTGATCAATGTA | + |
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Preference number: 2 (lower is better) Translates to: TFQMLSFGFKILTNR*ASSLKDQHVNLINV Trigger: TACATTGATCAGGTTAACATGCTGATCTTTCAGAGAGCTGGCCAATCTGTTTGTTAGTATTTTAAAACCGAAGGAAAGCATCTGGAATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 90 bp | TTATCAAAACTCCGTGAACAATTGTCTTTCCAAACTTGGAGTGTTTaGCAAAATCTTCACTTAAATGCAAAGGATTGGCATCTCCCGTTA | + |
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Preference number: 2 (lower is better) Translates to: LSKLREQLSFQTWSV*QNLHLNAKDWHLPL Trigger: TAACGGGAGATGCCAATCCTTTGCATTTAAGTGAAGATTTTGCAAAACACTCCAAGTTTGGAAAGACAATTGTTCACGGAGTTTTGATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CCA 72 bp | ACCAATCTGGAAGTCTCCCCTTCCACACACAGCTTCTaGATATACCAGCATTCCTCCAGGAAGAGCAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: TNLEVSPSTHSF*IYQHSSRKSSS Trigger: GCTGCTGCTCTTCCTGGAGGAATGCTGGTATATCCAGAAGCTGTGTGTGGAAGGGGAGACTTCCAGATTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CCA 72 bp | GTTAGCTTTAAATTCTGCCTGCCTCTGCCTCCTAAGTaGGAACTAAAGGCCAGTGGCACCACATGCAACAAA | + |
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Preference number: 3 (lower is better) Translates to: VSFKFCLPLPPK*ELKASGTTCNK Trigger: TTTGTTGCATGTGGTGCCACTGGCCTTTAGTTCCCACTTAGGAGGCAGAGGCAGGCAGAATTTAAAGCTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CAA 90 bp | ACACAACAGGACACTGCAACAACAGCAACAGACTGCTTCAGCCTTTTCACTTCTTGGTACCACATGATGTaGCCACAGTCTCCTCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: TQQDTATTATDCFSLFTSWYHMM*PQSPLK Trigger: CTTCAGAGGAGACTGTGGCAACATCATGTGGTACCA...AGAAGTGAAAAGGCTGAAGCAGTCTGTTGCTGTTGTTGCAGTGTCCTGTTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR TCA 72 bp | ACAGCCTGGCCCTGGCATTTTGGTGCCCAGGAGAGCTaGAATAAGTCCATTTATCAAAACTCCGTGAACAAT | + |
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Preference number: 3 (lower is better) Translates to: TAWPWHFGAQES*NKSIYQNSVNN Trigger: ATTGTTCACGGAGTTTTGATAAATGGACTTATTTCAGCTCTCCTGGGCACCAAAATGCCAGGGCCAGGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR TCA 72 bp | TTCCAACAATGCTGCCATGCTAGGACTTTATATAACTaGGTCGTGGCTGCATGGAAACCCCTCACCAGTAAC | + |
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Preference number: 3 (lower is better) Translates to: FQQCCHARTLYN*VVAAWKPLTSN Trigger: GTTACTGGTGAGGGGTTTCCATGCAGCCACGACTCAGTTATATAAAGTCCTAGCATGGCAGCATTGTTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CCA 72 bp | AACTTTCGTGTGCACATACTGAAAACACTGCCCTGTTaGTACCACATGATGTTGCCACAGTCTCCTCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: NFRVHILKTLPC*YHMMLPQSPLK Trigger: CTTCAGAGGAGACTGTGGCAACATCATGTGGTACCAACAGGGCAGTGTTTTCAGTATGTGCACACGAAAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 72 bp | ATGAGATCTTGCACATATTTAAGTCTGGACAAACCATaGACCAATCTGGAAGTCTCCCCTTCCACACACAGC | + |
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Preference number: 3 (lower is better) Translates to: MRSCTYLSLDKP*TNLEVSPSTHS Trigger: GCTGTGTGTGGAAGGGGAGACTTCCAGATTGGTGCATGGTTTGTCCAGACTTAAATATGTGCAAGATCTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CAA 90 bp | ACTTTAACCCAGCCTTCCATAACTGTCTTCTTACTTTCTATTACACAACAGGACGAAAACACTGCCCTGTaGGTACCACATGATGTTGCC | + |
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Preference number: 3 (lower is better) Translates to: TLTQPSITVFLLSITQQDENTAL*VPHDVA Trigger: GGCAACATCATGTGGTACCAACAGGGCAGTGTTTTC...GTCCTGTTGTGTAATAGAAAGTAAGAAGACAGTTATGGAAGGCTGGGTTAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 72 bp | ATGGCTCTACTTGCATTGCTGCAGTTATACTTGCATTaGTGCACTTGGTATACATGGTGGTATAAATCCAGC | + |
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Preference number: 3 (lower is better) Translates to: MALLALLQLYLH*CTWYTWWYKSS Trigger: GCTGGATTTATACCACCATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 72 bp | CCTCCTAAGTGGGAACTAAAGGCCAGTGGCACCACATaGAACAAAAGATTACATCTTGGTGTAAGGAATTAT | + |
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Preference number: 3 (lower is better) Translates to: PPKWELKASGTT*NKRLHLGVRNY Trigger: ATAATTCCTTACACCAAGATGTAATCTTTTGTTGCATGTGGTGCCACTGGCCTTTAGTTCCCACTTAGGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 72 bp | CAGAGATGGCTCTACTTGCATTGCTGCAGTTATACTTaGATTGCTGCACTTGGTATACATGGTGGTATAAAT | + |
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Preference number: 3 (lower is better) Translates to: QRWLYLHCCSYT*IAALGIHGGIN Trigger: ATTTATACCACCATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 72 bp | GAATTAGGTGTTCAGAGATGGCTCTACTTGCATTGCTaGAGTTATACTTGCATTGCTGCACTTGGTATACAT | + |
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Preference number: 3 (lower is better) Translates to: ELGVQRWLYLHC*SYTCIAALGIH Trigger: ATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTGAACACCTAATTC 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR GCA 72 bp | TCAGAATTAGGTGTTCAGAGATGGCTCTACTTGCATTaGTGCAGTTATACTTGCATTGCTGCACTTGGTATA | + |
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Preference number: 3 (lower is better) Translates to: SELGVQRWLYLH*CSYTCIAALGI Trigger: TATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTGAACACCTAATTCTGA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CAA 90 bp | AAAATACTAACAAACAGATTGGCCAGCTCTCTGAAAGATCAGCATGTTAACCTGCTTAAATGCAAAGGATaGGCATCTCCCGTTAACTCT | + |
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Preference number: 3 (lower is better) Translates to: KILTNRLASSLKDQHVNLLKCKG*ASPVNS Trigger: AGAGTTAACGGGAGATGCCAATCCTTTGCATTTAAG...CAGGTTAACATGCTGATCTTTCAGAGAGCTGGCCAATCTGTTTGTTAGTATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR-3UTR CAA 90 bp | CATTGCTGCACTTGGTATACATGGTGGTATAAATCCAGCAAGAAAATCCCTCAAAAACTCCGTGAACAATaGTCTTTCCAAACTTGGAGT | + |
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Preference number: 3 (lower is better) Translates to: HCCTWYTWWYKSSKKIPQKLREQ*SFQTWS Trigger: ACTCCAAGTTTGGAAAGACAATTGTTCACGGAGTTT...TTGAGGGATTTTCTTGCTGGATTTATACCACCATGTATACCAAGTGCAGCAATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CCA 72 bp | CTTGCATTGCTGCAGTTATACTTGCATTGCTGCACTTaGTATACATGGTGGTATAAATCCAGCAAGAAAATC | + |
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Preference number: 3 (lower is better) Translates to: LALLQLYLHCCT*YTWWYKSSKKI Trigger: GATTTTCTTGCTGGATTTATACCACCATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 72 bp | ATACTGAAAACACTGCCCTGTTGGTACCACATGATGTaGCCACAGTCTCCTCTGAAGCCCACGCCACATCTT | + |
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Preference number: 4 (lower is better) Translates to: ILKTLPCWYHMM*PQSPLKPTPHL Trigger: AAGATGTGGCGTGGGCTTCAGAGGAGACTGTGGCAACATCATGTGGTACCAACAGGGCAGTGTTTTCAGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 72 bp | TCCTGGGAAAGAAACACACAGCCTGGCCCTGGCATTTaGGTGCCCAGGAGAGCTGAAATAAGTCCATTTATC | + |
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Preference number: 4 (lower is better) Translates to: SWERNTQPGPGI*VPRRAEISPFI Trigger: GATAAATGGACTTATTTCAGCTCTCCTGGGCACCAAAATGCCAGGGCCAGGCTGTGTGTTTCTTTCCCAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR TCA 90 bp | TATATAACTGAGTCGTGGCTGCATGGAAACCCCTCACCAGTAACAGCAAAACCCTCTTCTCATCGTAGGTaGGAACATCCACAGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: YITESWLHGNPSPVTAKPSSHRR*EHPQAE Trigger: CTCTGCCTGTGGATGTTCTCACCTACGATGAGAAGA...GGGTTTTGCTGTTACTGGTGAGGGGTTTCCATGCAGCCACGACTCAGTTATATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR GCA 90 bp | ACACAACAGGACACTGCAACAACAGCAACAGACTGCTTCAGCCTTTTCACTTCTCAGCTGTTTGAACTGTaGCACGTTCAGTCCAACCCC | + |
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Preference number: 4 (lower is better) Translates to: TQQDTATTATDCFSLFTSQLFEL*HVQSNP Trigger: GGGGTTGGACTGAACGTGGCACAGTTCAAACAGCTG...AGAAGTGAAAAGGCTGAAGCAGTCTGTTGCTGTTGTTGCAGTGTCCTGTTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 72 bp | TGTGCAGGTAGTTTCGGCACAGGCCAGAAGATGGTGTaGGATCACCTGAGACTGAAGTTACATACAGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: CAGSFGTGQKMV*DHLRLKLHTVV Trigger: CACAACTGTATGTAACTTCAGTCTCAGGTGATCCAACACCATCTTCTGGCCTGTGCCGAAACTACCTGCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR GCA 90 bp | AACTCTGAGAAGGTAGCTACATCCTGCTGTGTGAAGGCTCTGCTGAGCTCCGCTCCAATACTTGTTCCCTaGTATTGCCAGATAATGCAA | + |
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Preference number: 4 (lower is better) Translates to: NSEKVATSCCVKALLSSAPILVP*YCQIMQ Trigger: TTGCATTATCTGGCAATAGCAGGGAACAAGTATTGG...AGCGGAGCTCAGCAGAGCCTTCACACAGCAGGATGTAGCTACCTTCTCAGAGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR CCA 90 bp | CAGCCTGGCCCTGGCATTTTGGTGCCCAGGAGAGCTGAAATAAGTCCATTTATCTGCATATTCTCAAGATaGCCGACAGTGTCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: QPGPGILVPRRAEISPFICIFSR*PTVSSH Trigger: ATGAGAAGACACTGTCGGCCATCTTGAGAATATGCA...GATAAATGGACTTATTTCAGCTCTCCTGGGCACCAAAATGCCAGGGCCAGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 72 bp | AGGGTCTCAGAATTAGGTGTTCAGAGATGGCTCTACTaGCATTGCTGCAGTTATACTTGCATTGCTGCACTT | + |
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Preference number: 4 (lower is better) Translates to: RVSELGVQRWLY*HCCSYTCIAAL Trigger: AAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTGAACACCTAATTCTGAGACCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR TCA 90 bp | TCTTCACTTAAATGCAAAGGATTGGCATCTCCCGTTAACTCTGAGAAGGTAGCTCCAACCCCATGTTCTTaGAACTCTAGACAGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: SSLKCKGLASPVNSEKVAPTPCS*NSRQTF Trigger: GAAAGTCTGTCTAGAGTTTCAAGAACATGGGGTTGG...AGCTACCTTCTCAGAGTTAACGGGAGATGCCAATCCTTTGCATTTAAGTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR GCA 90 bp | TGCTGCACTTGGTATACATGGTGGTATAAATCCAGCAAGAAAATCCCTCAACACCTTGTTCCCTGCTATTaGCAGATAATGCAAGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: CCTWYTWWYKSSKKIPQHLVPCY*QIMQGE Trigger: TTCTCCTTGCATTATCTGGCAATAGCAGGGAACAAG...GTGTTGAGGGATTTTCTTGCTGGATTTATACCACCATGTATACCAAGTGCAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 72 bp | TCAGAGATGGCTCTACTTGCATTGCTGCAGTTATACTaGCATTGCTGCACTTGGTATACATGGTGGTATAAA | + |
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Preference number: 4 (lower is better) Translates to: SEMALLALLQLY*HCCTWYTWWYK Trigger: TTTATACCACCATGTATACCAAGTGCAGCAATGCAAGTATAACTGCAGCAATGCAAGTAGAGCCATCTCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| 3UTR CAA 72 bp | ATGCTTTCCTTCGGTTTTAAAATACTAACAAACAGATaGGCCAGCTCTCTGAAAGATCAGCATGTTAACCTG | + |
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Preference number: 4 (lower is better) Translates to: MLSFGFKILTNR*ASSLKDQHVNL Trigger: CAGGTTAACATGCTGATCTTTCAGAGAGCTGGCCAATCTGTTTGTTAGTATTTTAAAACCGAAGGAAAGCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR TCA 90 bp | CTCCCCGGGTGTCATTTGATAATAAGAGCACAGGTTTTTAAATGTATAACTTTAAAGAACTCCATAATTTaGCCAGACCACTGCTGCATA | + |
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Preference number: 4 (lower is better) Translates to: LPGCHLIIRAQVFKCITLKNSII*PDHCCI Trigger: TATGCAGCAGTGGTCTGGTCAAATTATGGAGTTCTT...TAAAGTTATACATTTAAAAACCTGTGCTCTTATTATCAAATGACACCCGGGGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS TCA 90 bp | CACAGGCAGAGCGGCACCGACCTCCCCAAACAGGTCTCTCAGGGCTaGGACGAGCAGCTGTTTGAACTGTGCCACGTTCAGTCCAACCCC | + |
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Preference number: 5 (lower is better) Translates to: HRQSGTDLPKQVSQG*DEQLFELCHVQSNP Trigger: GGGGTTGGACTGAACGTGGCACAGTTCAAACAGCTGCTCGTCTCAGCCCTGAGAGACCTGTTTGGGGAGGTCGGTGCCGCTCTGCCTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS TCA 90 bp | TGCTGCATATTCTCAAGATGGCCGACAGTGTCTTCTCATCGTAGGTaGGAACATCCACAGGCAGAGCGGCACCGACCTCCCCAAACAGGT | + |
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Preference number: 5 (lower is better) Translates to: CCIFSRWPTVSSHRR*EHPQAERHRPPQTG Trigger: ACCTGTTTGGGGAGGTCGGTGCCGCTCTGCCTGTGGATGTTCTCACCTACGATGAGAAGACACTGTCGGCCATCTTGAGAATATGCAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS TCA 90 bp | CGACCTCCCCAAACAGGTCTCTCAGGGCTGAGACGAGCAGCTGTTTaGACTGTGCCACGTTCAGTCCAACCCCATGTTCTTGAAACTCTA | + |
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Preference number: 5 (lower is better) Translates to: RPPQTGLSGLRRAAV*TVPRSVQPHVLETL Trigger: TAGAGTTTCAAGAACATGGGGTTGGACTGAACGTGGCACAGTTCAAACAGCTGCTCGTCTCAGCCCTGAGAGACCTGTTTGGGGAGGTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR CAA 90 bp | CAAACCATGCACCAATCTGGAAGTCTCCCCTTCCACACACAGCTTCTGGATATAGAGACGAGCAGCTGTTaGAACTGTGCCACGTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: QTMHQSGSLPFHTQLLDIETSSC*NCATFS Trigger: ACTGAACGTGGCACAGTTCAAACAGCTGCTCGTCTC...TATATCCAGAAGCTGTGTGTGGAAGGGGAGACTTCCAGATTGGTGCATGGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS-3UTR CAA 90 bp | CAGCCTGGCCCTGGCATTTTGGTGCCCAGGAGAGCTGAAATAAGTCCATTTATCACTTGTTCCCTGCTATaGCCAGATAATGCAAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: QPGPGILVPRRAEISPFITCSLL*PDNARR Trigger: TCTCCTTGCATTATCTGGCAATAGCAGGGAACAAGT...GATAAATGGACTTATTTCAGCTCTCCTGGGCACCAAAATGCCAGGGCCAGGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS TCA 90 bp | TCTTGCTTTTATAGGCTCCAAACAAGGTCAAAGAACTCCATAATTTaGCCAGACCACTGCTGCATATTCTCAAGATGGCCGACAGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: SCFYRLQTRSKNSII*PDHCCIFSRWPTVS Trigger: AGACACTGTCGGCCATCTTGAGAATATGCAGCAGTGGTCTGGTCAAATTATGGAGTTCTTTGACCTTGTTTGGAGCCTATAAAAGCAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS TCA 72 bp | AGCGGCACCGACCTCCCCAAACAGGTCTCTCAGGGCTaGGACGAGCAGCTGTTTGAACTGTGCCACGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: SGTDLPKQVSQG*DEQLFELCHVQ Trigger: CTGAACGTGGCACAGTTCAAACAGCTGCTCGTCTCAGCCCTGAGAGACCTGTTTGGGGAGGTCGGTGCCGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS TCA 72 bp | TTCTCAAGATGGCCGACAGTGTCTTCTCATCGTAGGTaGGAACATCCACAGGCAGAGCGGCACCGACCTCCC | + |
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Preference number: 6 (lower is better) Translates to: FSRWPTVSSHRR*EHPQAERHRPP Trigger: GGGAGGTCGGTGCCGCTCTGCCTGTGGATGTTCTCACCTACGATGAGAAGACACTGTCGGCCATCTTGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS CAA 72 bp | CCAAACAGGTCTCTCAGGGCTGAGACGAGCAGCTGTTaGAACTGTGCCACGTTCAGTCCAACCCCATGTTCT | + |
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Preference number: 6 (lower is better) Translates to: PNRSLRAETSSC*NCATFSPTPCS Trigger: AGAACATGGGGTTGGACTGAACGTGGCACAGTTCAAACAGCTGCTCGTCTCAGCCCTGAGAGACCTGTTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS TCA 72 bp | CAAACAGGTCTCTCAGGGCTGAGACGAGCAGCTGTTTaGACTGTGCCACGTTCAGTCCAACCCCATGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: QTGLSGLRRAAV*TVPRSVQPHVL Trigger: AAGAACATGGGGTTGGACTGAACGTGGCACAGTTCAAACAGCTGCTCGTCTCAGCCCTGAGAGACCTGTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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| CDS TCA 72 bp | TATAGGCTCCAAACAAGGTCAAAGAACTCCATAATTTaGCCAGACCACTGCTGCATATTCTCAAGATGGCCG | + |
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Preference number: 6 (lower is better) Translates to: YRLQTRSKNSII*PDHCCIFSRWP Trigger: CGGCCATCTTGAGAATATGCAGCAGTGGTCTGGTCAAATTATGGAGTTCTTTGACCTTGTTTGGAGCCTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023924.4 |
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