Pregenerated sensors for RPLP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025508Ensembl transcript IDs: ENSMUST00000084434.11
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TATTTAACAAAAGCTGCAAGGAAACACCACACAGGGCCTGACAGTTGTCTAAAGCCACTGACCCAACTCTaGGTGGAGCCTAGGCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: YLTKAARKHHTGPDSCLKPLTQL*VEPRLK Trigger: CTTCAGCCTAGGCTCCACCCAGAGTTGGGTCAGTGG...CTTTAGACAACTGTCAGGCCCTGTGTGGTGTTTCCTTGCAGCTTTTGTTAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084434.11 |
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| 3UTR-3UTR CAA 90 bp | TATTTAACAAAAGCTGCAAGGAAACACCACACAGGGCCTGACAGTTGTCTAAAGACAGCATGTCGCATGTaGACAAAATGTTTAAAGGCC | + |
|
Preference number: 3 (lower is better) Translates to: YLTKAARKHHTGPDSCLKTACRM*TKCLKA Trigger: GGCCTTTAAACATTTTGTCAACATGCGACATGCTGT...CTTTAGACAACTGTCAGGCCCTGTGTGGTGTTTCCTTGCAGCTTTTGTTAAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084434.11 |
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| CDS-3UTR CCA 90 bp | GCTGCAAGGAAACACCACACAGGGCCTGACAGTTGTCTAAAGCCAAGGCCCTACCACCAGCAGGCACACTaGCCAGCTTGCCAACACCCT | + |
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Preference number: 4 (lower is better) Translates to: AARKHHTGPDSCLKPRPYHQQAH*PACQHP Trigger: AGGGTGTTGGCAAGCTGGCCAGTGTGCCTGCTGGTG...GTAGGGCCTTGGCTTTAGACAACTGTCAGGCCCTGTGTGGTGTTTCCTTGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084434.11 |
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| CDS-3UTR GCA 90 bp | GAAGACACAGCATGTCGCATGTTGACAAAATGTTTAAAGGCCACTCAAGATACATTTCTTCTCCTCTGCTaGAGCGGGGGCAGAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: EDTACRMLTKCLKATQDTFLLLC*SGGRTS Trigger: GCTGGTTCTGCCCCCGCTGCAGCAGAGGAGAAGAAA...TGTATCTTGAGTGGCCTTTAAACATTTTGTCAACATGCGACATGCTGTGTCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000084434.11 |
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| CDS-3UTR GCA 90 bp | GAAGACACAGCATGTCGCATGTTGACAAAATGTTTAAAGGCCACTCAAGATACAATCTTTCTTCTCCTCTaGTGCAGCGGGGGCAGAACC | + |
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Preference number: 4 (lower is better) Translates to: EDTACRMLTKCLKATQDTIFLLL*CSGGRT Trigger: GGTTCTGCCCCCGCTGCAGCAGAGGAGAAGAAAGAT...TGTATCTTGAGTGGCCTTTAAACATTTTGTCAACATGCGACATGCTGTGTCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000084434.11 |
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| CDS-3UTR CAA 90 bp | CCACTGACCCAACTCTGGGTGGAGCCTAGGCTGAAGACACAGCATGTCGCATGTCTGTCTAGTATTTTCTaGATGTCTTTGGCGCTAGGA | + |
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Preference number: 5 (lower is better) Translates to: PLTQLWVEPRLKTQHVACLSSIF*MSLALG Trigger: TCCTAGCGCCAAAGACATCAAGAAAATACTAGACAG...ACATGCGACATGCTGTGTCTTCAGCCTAGGCTCCACCCAGAGTTGGGTCAGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084434.11 |
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