Pregenerated sensors for RPLP0 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067274Ensembl transcript IDs: ENSMUST00000086519.12
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CACCTGGAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCAGCTTTGGCAGGGGCTaGAGCAGCCGCAGGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: HLENLCPRLAMAPSQETVSFGRG*SSRRGS Trigger: GCTGCCCCTGCGGCTGCTGCAGCCCCTGCCAAAGCT...GACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTCCAGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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| CDS-3UTR GCA 90 bp | CCTGGAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCTCCTCCGACTCTTCCTTTaGTTCAGCTTTGGCAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: PGKSLSQTSYGTKSRDCLLRLFL*FSFGRG Trigger: GCCCCTGCCAAAGCTGAAGCAAAGGAAGAGTCGGAG...GAGACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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| CDS-3UTR CCA 90 bp | GAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCTCAAAAGCAGTGTGGCCTCGCTaGCTCCCACCTTGTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: ENLCPRLAMAPSQETVSKAVWPR*LPPCLQ Trigger: CTGGAGACAAGGTGGGAGCCAGCGAGGCCACACTGC...TTTTGAGACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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| CDS-3UTR CCA 90 bp | GAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCTCAAAAGGGTTGTTCTCCAGGTaGCCCCTGATAGCCTTGCGC | + |
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Preference number: 4 (lower is better) Translates to: ENLCPRLAMAPSQETVSKGLFSR*PLIALR Trigger: GCGCAAGGCTATCAGGGGCCACCTGGAGAACAACCC...TTTTGAGACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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| CDS-3UTR CCA 90 bp | GAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCTCAAAAAGCCCGAGCAGCAGCTaGCACCTTATTGGCCAACAG | + |
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Preference number: 4 (lower is better) Translates to: ENLCPRLAMAPSQETVSKSPSSS*HLIGQQ Trigger: CTGTTGGCCAATAAGGTGCCAGCTGCTGCTCGGGCT...TTTTGAGACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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| CDS-3UTR GCA 90 bp | GAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCTCAAAAGGCAGCAGCCGCAAATaGAGATGGATCAGCCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: ENLCPRLAMAPSQETVSKGSSRK*RWISQE Trigger: TTCCTGGCTGATCCATCTGCATTTGCGGCTGCTGCC...TTTTGAGACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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| CDS-3UTR GCA 90 bp | CCTGGAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCTCCAGGGTTATAAATGCTaGCGTTGTCAAACACCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PGKSLSQTSYGTKSRDCLQGYKC*RCQTPA Trigger: AGCAGGTGTTTGACAACGGCAGCATTTATAACCCTG...GAGACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTCCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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| CDS-3UTR GCA 90 bp | GAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCTCAAAACTTCAGGGTTATAAATaGTGCCGTTGTCAAACACCT | + |
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Preference number: 4 (lower is better) Translates to: ENLCPRLAMAPSQETVSKLQGYK*CRCQTP Trigger: AGGTGTTTGACAACGGCAGCATTTATAACCCTGAAG...TTTTGAGACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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| CDS-3UTR CAA 90 bp | CACCTGGAAAATCTTTGTCCCAGACTAGCTATGGCACCAAGTCAAGAGACTGTCTCCTTTGCTTCAGCTTaGGCAGGGGCTGCAGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: HLENLCPRLAMAPSQETVSFASA*AGAAAA Trigger: GGCTGCTGCAGCCCCTGCCAAAGCTGAAGCAAAGGA...GACAGTCTCTTGACTTGGTGCCATAGCTAGTCTGGGACAAAGATTTTCCAGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086519.12 |
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