Pregenerated sensors for RPL9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047215Ensembl transcript IDs: ENSMUST00000057885.13, ENSMUST00000118543.8, ENSMUST00000120094.5, ENSMUST00000127874.6, ENSMUST00000150815.6, ENSMUST00000196667.5
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCCCAAAAGAGCCCAAATTGTTCATGTGGTCAGGATCTCGTTTCTaGGGCCAGGAACTGAGGCCTCCTCACTCGTCAGCCTGCTGCACA | + |
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Preference number: 1 (lower is better) Translates to: LPKEPKLFMWSGSRF*GQELRPPHSSACCT Trigger: TGTGCAGCAGGCTGACGAGTGAGGAGGCCTCAGTTCCTGGCCCCAGAAACGAGATCCTGACCACATGAACAATTTGGGCTCTTTTGGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150815.6 |
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| 3UTR GCA 90 bp | TGTCGTGGAAATTTAACACACGCACTCTACCCACCATATGCAAGTTaGAACATCTTCCCAAAGCTCCAGGAGGAAGCTTTCTTTTACTAT | + |
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Preference number: 1 (lower is better) Translates to: CRGNLTHALYPPYAS*NIFPKLQEEAFFYY Trigger: ATAGTAAAAGAAAGCTTCCTCCTGGAGCTTTGGGAAGATGTTGCAACTTGCATATGGTGGGTAGAGTGCGTGTGTTAAATTTCCACGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR-3UTR CCA 90 bp | AGGATCTCGTTTCTGGGGCCAGGAACTGAGGCCTCCTCACTCGTCAGCCTGCTGTCAGGATCTCGTTTCTaGGGCCAGGAACTGAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: RISFLGPGTEASSLVSLLSGSRF*GQELRP Trigger: AGGCCTCAGTTCCTGGCCCCAGAAACGAGATCCTGA...CAGCAGGCTGACGAGTGAGGAGGCCTCAGTTCCTGGCCCCAGAAACGAGATCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150815.6 |
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| 3UTR-3UTR TCA 90 bp | CTCAAGCCTACACAGGAGGGGCTCCTTCACTGTCCTTGGATCTCATCTGAGCAGACCATTTTGTACTCATaGTACAAAGCACAGCATACA | + |
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Preference number: 2 (lower is better) Translates to: LKPTQEGLLHCPWISSEQTILYS*YKAQHT Trigger: TGTATGCTGTGCTTTGTATCATGAGTACAAAATGGT...CTGCTCAGATGAGATCCAAGGACAGTGAAGGAGCCCCTCCTGTGTAGGCTTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000127874.6 |
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| 3UTR CAA 90 bp | ATGTCGTGGAAATTTAACACACGCACTCTACCCACCATATGCAAGTaGCAACATCTTCCCAAAGCTCCAGGAGGAAGCTTTCTTTTACTA | + |
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Preference number: 2 (lower is better) Translates to: MSWKFNTRTLPTICK*QHLPKAPGGSFLLL Trigger: TAGTAAAAGAAAGCTTCCTCCTGGAGCTTTGGGAAGATGTTGCAACTTGCATATGGTGGGTAGAGTGCGTGTGTTAAATTTCCACGACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR-3UTR TCA 90 bp | ACAGAAATCAGACACACATTCAACCTCAAGGCTCAGATAAAATGTTACTGTCTGAGCTGGCCTAGATTTTaGGATTCCTCTTCTTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: TEIRHTFNLKAQIKCYCLSWPRF*DSSSSV Trigger: AACTGAAGAAGAGGAATCTCAAAATCTAGGCCAGCT...CAGACAGTAACATTTTATCTGAGCCTTGAGGTTGAATGTGTGTCTGATTTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR-3UTR TCA 90 bp | ACAGAAATCAGACACACATTCAACCTCAAGGCTCAGATAAAATGTTACTGTCTGAACTGTGAGCCATCCTaGACAAACTCAAAGTTTTCG | + |
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Preference number: 2 (lower is better) Translates to: TEIRHTFNLKAQIKCYCLNCEPS*TNSKFS Trigger: CGAAAACTTTGAGTTTGTTCAGGATGGCTCACAGTT...CAGACAGTAACATTTTATCTGAGCCTTGAGGTTGAATGTGTGTCTGATTTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR TCA 72 bp | ATCCGAAGCAGTCAGCTGCAGACATGGGCACCCACCTaGGGCCTCCTCACTCGTCAGCCTGCTGCACAGTTC | + |
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Preference number: 3 (lower is better) Translates to: IRSSQLQTWAPT*GLLTRQPAAQF Trigger: GAACTGTGCAGCAGGCTGACGAGTGAGGAGGCCTCAGGTGGGTGCCCATGTCTGCAGCTGACTGCTTCGGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000127874.6 |
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| 3UTR TCA 72 bp | TCATGTGGTCAGGATCTCGTTTCTGGGGCCAGGAACTaGGGCCTCCTCACTCGTCAGCCTGCTGCACAGTTC | + |
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Preference number: 3 (lower is better) Translates to: SCGQDLVSGARN*GLLTRQPAAQF Trigger: GAACTGTGCAGCAGGCTGACGAGTGAGGAGGCCTCAGTTCCTGGCCCCAGAAACGAGATCCTGACCACATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150815.6 |
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| 3UTR CCA 72 bp | GAGCCCAAATTGTTCATGTGGTCAGGATCTCGTTTCTaGGGCCAGGAACTGAGGCCTCCTCACTCGTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: EPKLFMWSGSRF*GQELRPPHSSA Trigger: GGCTGACGAGTGAGGAGGCCTCAGTTCCTGGCCCCAGAAACGAGATCCTGACCACATGAACAATTTGGGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150815.6 |
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| 3UTR GCA 72 bp | TTTTTAATCACACTGTGCTCATCCGAAGCAGTCAGCTaGAGACATGGGCACCCACCTGAGGCCTCCTCACTC | + |
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Preference number: 3 (lower is better) Translates to: FLITLCSSEAVS*RHGHPPEASSL Trigger: GAGTGAGGAGGCCTCAGGTGGGTGCCCATGTCTGCAGCTGACTGCTTCGGATGAGCACAGTGTGATTAAAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000127874.6 |
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| 3UTR-3UTR CAA 90 bp | CTCAAGCCTACACAGGAGGGGCTCCTTCACTGTCCTTGGATCTCATCTGAGCAGTGTCTTTTCTATCCATaGAGTCCCAAACATACCAGC | + |
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Preference number: 3 (lower is better) Translates to: LKPTQEGLLHCPWISSEQCLFYP*SPKHTS Trigger: GCTGGTATGTTTGGGACTCAATGGATAGAAAAGACA...CTGCTCAGATGAGATCCAAGGACAGTGAAGGAGCCCCTCCTGTGTAGGCTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR TCA 72 bp | ACTTTCCCAACCAAGCCAGCCATGTGCCACCCAATTTaGACATCTACGAGCAGAGCACACACAACCATTTTG | + |
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Preference number: 3 (lower is better) Translates to: TFPTKPAMCHPI*TSTSRAHTTIL Trigger: CAAAATGGTTGTGTGTGCTCTGCTCGTAGATGTTCAAATTGGGTGGCACATGGCTGGCTTGGTTGGGAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000127874.6 |
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| 3UTR TCA 72 bp | ACAGGAGGGGCTCCTTCACTGTCCTTGGATCTCATCTaGGCAGTGGCATACACACCCCAATATAGACATAAA | + |
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Preference number: 3 (lower is better) Translates to: TGGAPSLSLDLI*AVAYTPQYRHK Trigger: TTTATGTCTATATTGGGGTGTGTATGCCACTGCTCAGATGAGATCCAAGGACAGTGAAGGAGCCCCTCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000127874.6 |
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| 3UTR GCA 72 bp | AATTTAACACACGCACTCTACCCACCATATGCAAGTTaGAACATCTTCCCAAAGCTCCAGGAGGAAGCTTTC | + |
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Preference number: 3 (lower is better) Translates to: NLTHALYPPYAS*NIFPKLQEEAF Trigger: GAAAGCTTCCTCCTGGAGCTTTGGGAAGATGTTGCAACTTGCATATGGTGGGTAGAGTGCGTGTGTTAAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR CCA 72 bp | GGGCTCCTTCACTGTCCTTGGATCTCATCTGAGCAGTaGCATACACACCCCAATATAGACATAAAAACGAAT | + |
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Preference number: 3 (lower is better) Translates to: GLLHCPWISSEQ*HTHPNIDIKTN Trigger: ATTCGTTTTTATGTCTATATTGGGGTGTGTATGCCACTGCTCAGATGAGATCCAAGGACAGTGAAGGAGCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000127874.6 |
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| 3UTR-3UTR CAA 90 bp | CCTTGGATCTCATCTGAGCAGTGGCATACACACCCCAATATAGACATAAAAACGTGCCCTAAGGTGCTTTaGTCATGTCGTGGAAATTTA | + |
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Preference number: 3 (lower is better) Translates to: PWISSEQWHTHPNIDIKTCPKVL*SCRGNL Trigger: TAAATTTCCACGACATGACAAAAGCACCTTAGGGCA...CGTTTTTATGTCTATATTGGGGTGTGTATGCCACTGCTCAGATGAGATCCAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR TCA 72 bp | AGACAGAGTATAACTCTGGCTGTCTTTTCTATCCATTaGGTCCCAAACATACCAGCCAGCAATCTCCACTAT | + |
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Preference number: 3 (lower is better) Translates to: RQSITLAVFSIH*VPNIPASNLHY Trigger: ATAGTGGAGATTGCTGGCTGGTATGTTTGGGACTCAATGGATAGAAAAGACAGCCAGAGTTATACTCTGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR CCA 72 bp | GGGCATAAGATCCTCATTTTTGGCATTAGGCATCTGTaGAGTTACTACAGACACCACCAGATAATAAGTGAC | + |
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Preference number: 3 (lower is better) Translates to: GHKILIFGIRHL*SYYRHHQIISD Trigger: GTCACTTATTATCTGGTGGTGTCTGTAGTAACTCCACAGATGCCTAATGCCAAAAATGAGGATCTTATGCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| CDS-3UTR GCA 90 bp | CAAAAGAGCCCAAATTGTTCATGTGGTCAGGATCTCGTTTCTGGGGCCAGGAACCACTCGTCAGCCTGCTaGACAGTTCCCTTCTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: QKSPNCSCGQDLVSGARNHSSAC*TVPFSD Trigger: GTCTGAGAAGGGAACTGTGCAGCAGGCTGACGAGTG...GTTCCTGGCCCCAGAAACGAGATCCTGACCACATGAACAATTTGGGCTCTTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057885.13 ENSMUST00000196667.5 |
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| CDS-3UTR TCA 90 bp | CCAAAAGAGCCCAAATTGTTCATGTGGTCAGGATCTCGTTTCTGGGGCCAGGAATCATCCTTCTGGGCTTaGGAGACAGAACAAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: PKEPKLFMWSGSRFWGQESSFWA*ETEQAT Trigger: TGTGGCTTGTTCTGTCTCTCAAGCCCAGAAGGATGA...TTCCTGGCCCCAGAAACGAGATCCTGACCACATGAACAATTTGGGCTCTTTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057885.13 ENSMUST00000118543.8 ENSMUST00000196667.5 |
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| 3UTR CAA 72 bp | TACTTTCCCAACCAAGCCAGCCATGTGCCACCCAATTaGAACATCTACGAGCAGAGCACACACAACCATTTT | + |
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Preference number: 4 (lower is better) Translates to: YFPNQASHVPPN*NIYEQSTHNHF Trigger: AAAATGGTTGTGTGTGCTCTGCTCGTAGATGTTCAAATTGGGTGGCACATGGCTGGCTTGGTTGGGAAAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000127874.6 |
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| CDS-3UTR TCA 90 bp | GTTCTTTTAATCCTTTTTAATCACACTGTGCTCATCCGAAGCAGTCAGCTGCAGTCATCCTTCTGGGCTTaGGAGACAGAACAAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: VLLILFNHTVLIRSSQLQSSFWA*ETEQAT Trigger: TGTGGCTTGTTCTGTCTCTCAAGCCCAGAAGGATGA...CTGCAGCTGACTGCTTCGGATGAGCACAGTGTGATTAAAAAGGATTAAAAGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000120094.5 |
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| CDS-3UTR GCA 90 bp | ATTCCTGCTCAGAAAGTTCTTTTAATCCTTTTTAATCACACTGTGCTCATCCGACACTCGTCAGCCTGCTaGACAGTTCCCTTCTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: IPAQKVLLILFNHTVLIRHSSAC*TVPFSD Trigger: GTCTGAGAAGGGAACTGTGCAGCAGGCTGACGAGTG...TCGGATGAGCACAGTGTGATTAAAAAGGATTAAAAGAACTTTCTGAGCAGGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120094.5 |
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| 3UTR CAA 72 bp | GAGACAGAGTATAACTCTGGCTGTCTTTTCTATCCATaGAGTCCCAAACATACCAGCCAGCAATCTCCACTA | + |
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Preference number: 4 (lower is better) Translates to: ETEYNSGCLFYP*SPKHTSQQSPL Trigger: TAGTGGAGATTGCTGGCTGGTATGTTTGGGACTCAATGGATAGAAAAGACAGCCAGAGTTATACTCTGTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| CDS-3UTR TCA 90 bp | ATTCCTGCTCAGAAAGTTCTTTTAATCCTTTTTAATCACACTGTGCTCATCCGATCATCCTTCTGGGCTTaGGAGACAGAACAAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: IPAQKVLLILFNHTVLIRSSFWA*ETEQAT Trigger: TGTGGCTTGTTCTGTCTCTCAAGCCCAGAAGGATGA...TCGGATGAGCACAGTGTGATTAAAAAGGATTAAAAGAACTTTCTGAGCAGGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000120094.5 |
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| 3UTR CAA 72 bp | GAATTTAGAGTCAGCTCTAAATGCCCTAAGGTGCTTTaGTCATGTCGTGGAAATTTAACACACGCACTCTAC | + |
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Preference number: 4 (lower is better) Translates to: EFRVSSKCPKVL*SCRGNLTHALY Trigger: GTAGAGTGCGTGTGTTAAATTTCCACGACATGACAAAAGCACCTTAGGGCATTTAGAGCTGACTCTAAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR CAA 72 bp | CCCAAGCAACCAATCAAGTTCTCTAAGACTTTAGGGTaGGAATTGAACCTCCTGTCATCTCAGATGACAAAT | + |
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Preference number: 4 (lower is better) Translates to: PKQPIKFSKTLG*ELNLLSSQMTN Trigger: ATTTGTCATCTGAGATGACAGGAGGTTCAATTCCAACCCTAAAGTCTTAGAGAACTTGATTGGTTGCTTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| 3UTR CAA 72 bp | CAACCAATCAAGTTCTCTAAGACTTTAGGGTTGGAATaGAACCTCCTGTCATCTCAGATGACAAATGTGACT | + |
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Preference number: 4 (lower is better) Translates to: QPIKFSKTLGLE*NLLSSQMTNVT Trigger: AGTCACATTTGTCATCTGAGATGACAGGAGGTTCAATTCCAACCCTAAAGTCTTAGAGAACTTGATTGGTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127874.6 |
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| CDS-3UTR CAA 90 bp | CTCCCAAAAGAGCCCAAATTGTTCATGTGGTCAGGATCTCGTTTCTGGGGCCAGCTCATCCTTCTGGGCTaGAGAGACAGAACAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: LPKEPKLFMWSGSRFWGQLILLG*RDRTSH Trigger: GTGGCTTGTTCTGTCTCTCAAGCCCAGAAGGATGAG...CTGGCCCCAGAAACGAGATCCTGACCACATGAACAATTTGGGCTCTTTTGGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057885.13 ENSMUST00000118543.8 ENSMUST00000196667.5 |
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| CDS-3UTR CAA 90 bp | TCTCCCAAAAGAGCCCAAATTGTTCATGTGGTCAGGATCTCGTTTCTGGGGCCACTCATCCTTCTGGGCTaGAGAGACAGAACAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: SPKRAQIVHVVRISFLGPLILLG*RDRTSH Trigger: GTGGCTTGTTCTGTCTCTCAAGCCCAGAAGGATGAG...TGGCCCCAGAAACGAGATCCTGACCACATGAACAATTTGGGCTCTTTTGGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057885.13 ENSMUST00000118543.8 ENSMUST00000196667.5 |
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| CDS-3UTR CAA 90 bp | GTTCTTTTAATCCTTTTTAATCACACTGTGCTCATCCGAAGCAGTCAGCTGCAGCTCATCCTTCTGGGCTaGAGAGACAGAACAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: VLLILFNHTVLIRSSQLQLILLG*RDRTSH Trigger: GTGGCTTGTTCTGTCTCTCAAGCCCAGAAGGATGAG...CTGCAGCTGACTGCTTCGGATGAGCACAGTGTGATTAAAAAGGATTAAAAGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118543.8 ENSMUST00000120094.5 |
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| CDS-3UTR CAA 90 bp | CAAAGCACAGCATACAAATACCTACACAACAGATCCACAATGGATTTCTTCCTGCTCATCCTTCTGGGCTaGAGAGACAGAACAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: QSTAYKYLHNRSTMDFFLLILLG*RDRTSH Trigger: GTGGCTTGTTCTGTCTCTCAAGCCCAGAAGGATGAG...CAGGAAGAAATCCATTGTGGATCTGTTGTGTAGGTATTTGTATGCTGTGCTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118543.8 |
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