Pregenerated sensors for RPL8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003970Ensembl transcript IDs: ENSMUST00000004072.10, ENSMUST00000229183.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGGTGCCCACGGGCAAAACATTGCCGATATTCAGCTGGGCCTTCTTaGCGCAGTACACGAACTGTCCAGTGTGGATCCCCTCCGCTGCGA | + |
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Preference number: 5 (lower is better) Translates to: WCPRAKHCRYSAGPS*RSTRTVQCGSPPLR Trigger: TCGCAGCGGAGGGGATCCACACTGGACAGTTCGTGTACTGCGGCAAGAAGGCCCAGCTGAATATCGGCAATGTTTTGCCCGTGGGCACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004072.10 ENSMUST00000229183.2 |
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| CDS GCA 72 bp | AAGTCCACAGCACGTAGGCGCGCGGCGCCCTTACGGTaGTTCACGTGCGCACGGAAAACAGAACCCGCGCCT | + |
|
Preference number: 6 (lower is better) Translates to: KSTARRRAAPLR*FTCARKTEPAP Trigger: AGGCGCGGGTTCTGTTTTCCGTGCGCACGTGAAGCACCGTAAGGGCGCCGCGCGCCTACGTGCTGTGGACTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004072.10 ENSMUST00000229183.2 |
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| CDS GCA 72 bp | CGGGCAAAACATTGCCGATATTCAGCTGGGCCTTCTTaGCGCAGTACACGAACTGTCCAGTGTGGATCCCCT | + |
|
Preference number: 6 (lower is better) Translates to: RAKHCRYSAGPS*RSTRTVQCGSP Trigger: AGGGGATCCACACTGGACAGTTCGTGTACTGCGGCAAGAAGGCCCAGCTGAATATCGGCAATGTTTTGCCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004072.10 ENSMUST00000229183.2 |
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| CDS CAA 72 bp | ACGGGCAAAACATTGCCGATATTCAGCTGGGCCTTCTaGCCGCAGTACACGAACTGTCCAGTGTGGATCCCC | + |
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Preference number: 6 (lower is better) Translates to: TGKTLPIFSWAF*PQYTNCPVWIP Trigger: GGGGATCCACACTGGACAGTTCGTGTACTGCGGCAAGAAGGCCCAGCTGAATATCGGCAATGTTTTGCCCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004072.10 ENSMUST00000229183.2 |
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