Pregenerated sensors for RPL7L1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063888Ensembl transcript IDs: ENSMUST00000078286.6, ENSMUST00000233192.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCCGCTCCCAGTCACCCCTTCTCAGGCCCTCTCCGAGCCGAGGCTaGTGTCTGGCGACACAAGCGCTGTGCAGCAGGCAGCACACACTC | + |
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Preference number: 1 (lower is better) Translates to: PRSQSPLLRPSPSRG*CLATQALCSRQHTL Trigger: GAGTGTGTGCTGCCTGCTGCACAGCGCTTGTGTCGCCAGACACCAGCCTCGGCTCGGAGAGGGCCTGAGAAGGGGTGACTGGGAGCGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR CCA 90 bp | GAGGAGGCTGGCCAAGTGTCTGGAGCAGGGCACAGGCTGCCAGCTTaGACCCAGCACCTGACTTTGAGCTGTTTGTTTCCCCGCTCCCAG | + |
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Preference number: 1 (lower is better) Translates to: EEAGQVSGAGHRLPA*TQHLTLSCLFPRSQ Trigger: CTGGGAGCGGGGAAACAAACAGCTCAAAGTCAGGTGCTGGGTCCAAGCTGGCAGCCTGTGCCCTGCTCCAGACACTTGGCCAGCCTCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR GCA 90 bp | AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCTCCCCCAC | + |
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Preference number: 1 (lower is better) Translates to: NSLCRPGWPRTQKSA*LCLPSAGIKGVLPH Trigger: GTGGGGGAGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 90 bp | GACCCTCTTGATCCATGTTCAAGTGCGCCGCTTGGTCTGGCCCACTaGTCTAACAGTCTTGGAGGGGGTGGGAGGGAGGTTTGTGCTTGT | + |
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Preference number: 1 (lower is better) Translates to: DPLDPCSSAPLGLAH*SNSLGGGGREVCAC Trigger: ACAAGCACAAACCTCCCTCCCACCCCCTCCAAGACTGTTAGAGCAGTGGGCCAGACCAAGCGGCGCACTTGAACATGGATCAAGAGGGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 90 bp | AGAGCAGGCTTGCCTGTCCCTGAACTCATGAAGTCTGCCTGCCTCTaGCTCCCAAGCGCTGCAACTAAAGGTATACACACCAGGCCCAGG | + |
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Preference number: 1 (lower is better) Translates to: RAGLPVPELMKSACL*LPSAATKGIHTRPR Trigger: CCTGGGCCTGGTGTGTATACCTTTAGTTGCAGCGCTTGGGAGGCAGAGGCAGGCAGACTTCATGAGTTCAGGGACAGGCAAGCCTGCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 90 bp | GCTCACAATAAGCCATCGCCTTTGGGGCTGGAGGCACAAGCCAAGTaGACCTGCTTTCTCAGAGGGCCTAGAATTGGTCCCAGCATCCAC | + |
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Preference number: 1 (lower is better) Translates to: AHNKPSPLGLEAQAK*TCFLRGPRIGPSIH Trigger: GTGGATGCTGGGACCAATTCTAGGCCCTCTGAGAAAGCAGGTGCACTTGGCTTGTGCCTCCAGCCCCAAAGGCGATGGCTTATTGTGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 90 bp | ATCTGTAGAGCAGGCTTGCCTGTCCCTGAACTCATGAAGTCTGCCTaGCTCTGCCTCCCAAGCGCTGCAACTAAAGGTATACACACCAGG | + |
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Preference number: 1 (lower is better) Translates to: ICRAGLPVPELMKSA*LCLPSAATKGIHTR Trigger: CCTGGTGTGTATACCTTTAGTTGCAGCGCTTGGGAGGCAGAGGCAGGCAGACTTCATGAGTTCAGGGACAGGCAAGCCTGCTCTACAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 90 bp | CCAGAAATGGAAGCCTTAGCTCTGCTCGCCCAGGCCTCTCTCCAATaGTACAGTGCTTCCCTACTTAGGAAGATGCAGGATTCTGCAGGA | + |
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Preference number: 1 (lower is better) Translates to: PEMEALALLAQASLQ*YSASLLRKMQDSAG Trigger: TCCTGCAGAATCCTGCATCTTCCTAAGTAGGGAAGCACTGTAGCATTGGAGAGAGGCCTGGGCGAGCAGAGCTAAGGCTTCCATTTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR TCA 90 bp | AGACCTGGGTCATCTCCAGCAACATGGACAACCCCACTTGTTTCTTaGGTCTCTGTAACCCTGGCTGGCCTCAGGCTCACAATAAGCCAT | + |
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Preference number: 1 (lower is better) Translates to: RPGSSPATWTTPLVS*VSVTLAGLRLTISH Trigger: ATGGCTTATTGTGAGCCTGAGGCCAGCCAGGGTTACAGAGACTCAAGAAACAAGTGGGGTTGTCCATGTTGCTGGAGATGACCCAGGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 90 bp | TGCTCTAACAGTCTTGGAGGGGGTGGGAGGGAGGTTTGTGCTTGTTaGCCACCCAACATTAAACACCAAGATAGAAGGCAGGATGAGCAG | + |
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Preference number: 1 (lower is better) Translates to: CSNSLGGGGREVCAC*PPNIKHQDRRQDEQ Trigger: CTGCTCATCCTGCCTTCTATCTTGGTGTTTAATGTTGGGTGGGCAACAAGCACAAACCTCCCTCCCACCCCCTCCAAGACTGTTAGAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 90 bp | CCCAGGCCTCTCTCCAATGCTACAGTGCTTCCCTACTTAGGAAGATaGAGGATTCTGCAGGATCCCAGAATGTTAAATAGCCATGCTGTT | + |
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Preference number: 1 (lower is better) Translates to: PRPLSNATVLPYLGR*RILQDPRMLNSHAV Trigger: AACAGCATGGCTATTTAACATTCTGGGATCCTGCAGAATCCTGCATCTTCCTAAGTAGGGAAGCACTGTAGCATTGGAGAGAGGCCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR TCA 90 bp | TGTTATTTTTGTTGCTGTTTATGCTTACAAAGGCAGACAGATTCCTaGGTCCAGGGTGACTTGGGACAGAGCAAGGTTAGACCCAGGTGT | + |
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Preference number: 1 (lower is better) Translates to: CYFCCCLCLQRQTDS*VQGDLGQSKVRPRC Trigger: ACACCTGGGTCTAACCTTGCTCTGTCCCAAGTCACCCTGGACTCAGGAATCTGTCTGCCTTTGTAAGCATAAACAGCAACAAAAATAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR-3UTR GCA 90 bp | AGGCTGGCCAAGTGTCTGGAGCAGGGCACAGGCTGCCAGCTTGGACCCAGCACCGCGACACAAGCGCTGTaGAGCAGGCAGCACACACTC | + |
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Preference number: 2 (lower is better) Translates to: RLAKCLEQGTGCQLGPSTATQAL*SRQHTL Trigger: GAGTGTGTGCTGCCTGCTGCACAGCGCTTGTGTCGC...GGTGCTGGGTCCAAGCTGGCAGCCTGTGCCCTGCTCCAGACACTTGGCCAGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR CAA 90 bp | GGGCACAGGCTGCCAGCTTGGACCCAGCACCTGACTTTGAGCTGTTaGTTTCCCCGCTCCCAGTCACCCCTTCTCAGGCCCTCTCCGAGC | + |
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Preference number: 2 (lower is better) Translates to: GHRLPAWTQHLTLSC*FPRSQSPLLRPSPS Trigger: GCTCGGAGAGGGCCTGAGAAGGGGTGACTGGGAGCGGGGAAACAAACAGCTCAAAGTCAGGTGCTGGGTCCAAGCTGGCAGCCTGTGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR CAA 90 bp | TCTGGAGCAGGGCACAGGCTGCCAGCTTGGACCCAGCACCTGACTTaGAGCTGTTTGTTTCCCCGCTCCCAGTCACCCCTTCTCAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: SGAGHRLPAWTQHLT*SCLFPRSQSPLLRP Trigger: GGGCCTGAGAAGGGGTGACTGGGAGCGGGGAAACAAACAGCTCAAAGTCAGGTGCTGGGTCCAAGCTGGCAGCCTGTGCCCTGCTCCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR CAA 90 bp | AGAGGAGGCTGGCCAAGTGTCTGGAGCAGGGCACAGGCTGCCAGCTaGGACCCAGCACCTGACTTTGAGCTGTTTGTTTCCCCGCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: RGGWPSVWSRAQAAS*DPAPDFELFVSPLP Trigger: TGGGAGCGGGGAAACAAACAGCTCAAAGTCAGGTGCTGGGTCCAAGCTGGCAGCCTGTGCCCTGCTCCAGACACTTGGCCAGCCTCCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR CAA 90 bp | CATGTTCAAGTGCGCCGCTTGGTCTGGCCCACTGCTCTAACAGTCTaGGAGGGGGTGGGAGGGAGGTTTGTGCTTGTTGCCCACCCAACA | + |
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Preference number: 2 (lower is better) Translates to: HVQVRRLVWPTALTV*EGVGGRFVLVAHPT Trigger: TGTTGGGTGGGCAACAAGCACAAACCTCCCTCCCACCCCCTCCAAGACTGTTAGAGCAGTGGGCCAGACCAAGCGGCGCACTTGAACATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR GCA 90 bp | AGCCTTAGCTCTGCTCGCCCAGGCCTCTCTCCAATGCTACAGTGCTTCCCTACTAAGTCTGCCTGCCTCTaGCTCCCAAGCGCTGCAACT | + |
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Preference number: 2 (lower is better) Translates to: SLSSARPGLSPMLQCFPTKSACL*LPSAAT Trigger: AGTTGCAGCGCTTGGGAGGCAGAGGCAGGCAGACTT...AGTAGGGAAGCACTGTAGCATTGGAGAGAGGCCTGGGCGAGCAGAGCTAAGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CAA 90 bp | TCTCTATGTGTAGCCCTGGGTATCCTGGAAATCTGTAGAGCAGGCTaGCCTGTCCCTGAACTCATGAAGTCTGCCTGCCTCTGCCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: SLCVALGILEICRAG*PVPELMKSACLCLP Trigger: TGGGAGGCAGAGGCAGGCAGACTTCATGAGTTCAGGGACAGGCAAGCCTGCTCTACAGATTTCCAGGATACCCAGGGCTACACATAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR GCA 90 bp | GTCCCAGCATCCACCTCTGAGCCTTCATTTGCCAGTAATTCTAGCTCCAGGGCACTTGGTCTGGCCCACTaGTCTAACAGTCTTGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: VPASTSEPSFASNSSSRALGLAH*SNSLGG Trigger: CCCTCCAAGACTGTTAGAGCAGTGGGCCAGACCAAG...TGCCCTGGAGCTAGAATTACTGGCAAATGAAGGCTCAGAGGTGGATGCTGGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR GCA 90 bp | AGCCTTAGCTCTGCTCGCCCAGGCCTCTCTCCAATGCTACAGTGCTTCCCTACTCCAACAGGGAGACCCTaGTTTGAACAAAGCAAACAC | + |
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Preference number: 2 (lower is better) Translates to: SLSSARPGLSPMLQCFPTPTGRP*FEQSKH Trigger: GTGTTTGCTTTGTTCAAAGCAGGGTCTCCCTGTTGG...AGTAGGGAAGCACTGTAGCATTGGAGAGAGGCCTGGGCGAGCAGAGCTAAGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CAA 90 bp | TGGAGGCACAAGCCAAGTGCACCTGCTTTCTCAGAGGGCCTAGAATaGGTCCCAGCATCCACCTCTGAGCCTTCATTTGCCAGTAATTCT | + |
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Preference number: 2 (lower is better) Translates to: WRHKPSAPAFSEGLE*VPASTSEPSFASNS Trigger: AGAATTACTGGCAAATGAAGGCTCAGAGGTGGATGCTGGGACCAATTCTAGGCCCTCTGAGAAAGCAGGTGCACTTGGCTTGTGCCTCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR GCA 90 bp | CTGGGTATCCTGGAAATCTGTAGAGCAGGCTTGCCTGTCCCTGAACTCATGAAGTGGGAGGGAGGTTTGTaGTTGTTGCCCACCCAACAT | + |
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Preference number: 2 (lower is better) Translates to: LGILEICRAGLPVPELMKWEGGL*LLPTQH Trigger: ATGTTGGGTGGGCAACAAGCACAAACCTCCCTCCCA...CTTCATGAGTTCAGGGACAGGCAAGCCTGCTCTACAGATTTCCAGGATACCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR TCA 90 bp | CTCACAATAAGCCATCGCCTTTGGGGCTGGAGGCACAAGCCAAGTGCACCTGCTCACCTCATTTCCCAATaGTCAGTTAACACTGATCCA | + |
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Preference number: 2 (lower is better) Translates to: LTISHRLWGWRHKPSAPAHLISQ*SVNTDP Trigger: TGGATCAGTGTTAACTGATCATTGGGAAATGAGGTG...AGCAGGTGCACTTGGCTTGTGCCTCCAGCCCCAAAGGCGATGGCTTATTGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR GCA 90 bp | CAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTACCACTGAGCCAACTCCAAGCCAAGTGCACCTaGTTTCTCAGAGGGCCTAGA | + |
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Preference number: 2 (lower is better) Translates to: QISLQMVVSHHVVPLSQLQAKCT*FLRGPR Trigger: TCTAGGCCCTCTGAGAAAGCAGGTGCACTTGGCTTG...GAGTTGGCTCAGTGGTACCACATGGTGGCTCACAACCATCTGTAATGAGATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR TCA 90 bp | AGTCAAGGTCCTAATAGACCTGGGTCATCTCCAGCAACATGGACAACCCCACTTAGGGAGACCCTGCTTTaGACAAAGCAAACACAAGAC | + |
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Preference number: 2 (lower is better) Translates to: SQGPNRPGSSPATWTTPLRETLL*TKQTQD Trigger: GTCTTGTGTTTGCTTTGTTCAAAGCAGGGTCTCCCT...AAGTGGGGTTGTCCATGTTGCTGGAGATGACCCAGGTCTATTAGGACCTTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR TCA 90 bp | GCACAAGCCAAGTGCACCTGCTTTCTCAGAGGGCCTAGAATTGGTCCCAGCATCTTAATAGAAGACAAGTaGTTAAACTTCAGTCCCCTC | + |
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Preference number: 2 (lower is better) Translates to: AQAKCTCFLRGPRIGPSILIEDK*LNFSPL Trigger: GAGGGGACTGAAGTTTAATCACTTGTCTTCTATTAA...GATGCTGGGACCAATTCTAGGCCCTCTGAGAAAGCAGGTGCACTTGGCTTGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR CCA 90 bp | GCACAAGCCAAGTGCACCTGCTTTCTCAGAGGGCCTAGAATTGGTCCCAGCATCTTTCCTGGGTACATGTaGTTTAGGAAACAACAATCT | + |
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Preference number: 2 (lower is better) Translates to: AQAKCTCFLRGPRIGPSIFPGYM*FRKQQS Trigger: AGATTGTTGTTTCCTAAACCACATGTACCCAGGAAA...GATGCTGGGACCAATTCTAGGCCCTCTGAGAAAGCAGGTGCACTTGGCTTGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR CCA 90 bp | TTGGTCCCAGCATCCACCTCTGAGCCTTCATTTGCCAGTAATTCTAGCTCCAGGGTTGCGATGCATTTTTaGTCACCTCATTTCCCAATG | + |
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Preference number: 2 (lower is better) Translates to: LVPASTSEPSFASNSSSRVAMHF*SPHFPM Trigger: CATTGGGAAATGAGGTGACCAAAAATGCATCGCAAC...CCTGGAGCTAGAATTACTGGCAAATGAAGGCTCAGAGGTGGATGCTGGGACCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR GCA 90 bp | TTTGCCAGTAATTCTAGCTCCAGGGCAAGTGACACTTCCTGGCTACTTTGGCATCTTAACAGACCAATGTaGATAAAAATGCAGGCTGTA | + |
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Preference number: 2 (lower is better) Translates to: FASNSSSRASDTSWLLWHLNRPM*IKMQAV Trigger: TACAGCCTGCATTTTTATGCACATTGGTCTGTTAAG...ATGCCAAAGTAGCCAGGAAGTGTCACTTGCCCTGGAGCTAGAATTACTGGCAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR GCA 90 bp | ACCAGGCCCAGGCAAACACTAGTTTTTAATAGAAGACAAGTGATTAAACTTCAGGAGGTTTGTGCTTGTTaGCCACCCAACATTAAACAC | + |
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Preference number: 2 (lower is better) Translates to: TRPRQTLVFNRRQVIKLQEVCAC*PPNIKH Trigger: GTGTTTAATGTTGGGTGGGCAACAAGCACAAACCTC...CTGAAGTTTAATCACTTGTCTTCTATTAAAAACTAGTGTTTGCCTGGGCCTGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR TCA 90 bp | TTATCTTTAACATTTTCTCTATGTGTAGCCCTGGGTATCCTGGAAATCTGTAGACCTTCCTTCAGTTTCTaGAGGCAGAAAATAATCTTC | + |
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Preference number: 2 (lower is better) Translates to: LSLTFSLCVALGILEICRPSFSF*RQKIIF Trigger: GAAGATTATTTTCTGCCTTCAGAAACTGAAGGAAGG...TCTACAGATTTCCAGGATACCCAGGGCTACACATAGAGAAAATGTTAAAGATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 72 bp | CCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTaGCTCCCGAGTGCTGGGATTAAAGGTGTGCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: PGWPRTQKSACL*LPSAGIKGVLP Trigger: GGGGAGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CCA 72 bp | TCTCAAGCAGAACAGAGAGGAGGCTGGCCAAGTGTCTaGAGCAGGGCACAGGCTGCCAGCTTGGACCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: SQAEQRGGWPSV*SRAQAASLDPA Trigger: TGCTGGGTCCAAGCTGGCAGCCTGTGCCCTGCTCCAGACACTTGGCCAGCCTCCTCTCTGTTCTGCTTGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR CCA 72 bp | CGAGCTATCCAGTCTCAAGCAGAACAGAGAGGAGGCTaGCCAAGTGTCTGGAGCAGGGCACAGGCTGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: RAIQSQAEQRGG*PSVWSRAQAAS Trigger: GCTGGCAGCCTGTGCCCTGCTCCAGACACTTGGCCAGCCTCCTCTCTGTTCTGCTTGAGACTGGATAGCTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR GCA 72 bp | GATCCATGTTCAAGTGCGCCGCTTGGTCTGGCCCACTaGTCTAACAGTCTTGGAGGGGGTGGGAGGGAGGTT | + |
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Preference number: 3 (lower is better) Translates to: DPCSSAPLGLAH*SNSLGGGGREV Trigger: AACCTCCCTCCCACCCCCTCCAAGACTGTTAGAGCAGTGGGCCAGACCAAGCGGCGCACTTGAACATGGATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CCA 72 bp | GGCCAAGTGTCTGGAGCAGGGCACAGGCTGCCAGCTTaGACCCAGCACCTGACTTTGAGCTGTTTGTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: GQVSGAGHRLPA*TQHLTLSCLFP Trigger: GGGAAACAAACAGCTCAAAGTCAGGTGCTGGGTCCAAGCTGGCAGCCTGTGCCCTGCTCCAGACACTTGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR GCA 72 bp | TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: CRPGWPRTQKSA*LCLPSAGIKGV Trigger: CACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR GCA 72 bp | AAGCCATCGCCTTTGGGGCTGGAGGCACAAGCCAAGTaGACCTGCTTTCTCAGAGGGCCTAGAATTGGTCCC | + |
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Preference number: 3 (lower is better) Translates to: KPSPLGLEAQAK*TCFLRGPRIGP Trigger: GGGACCAATTCTAGGCCCTCTGAGAAAGCAGGTGCACTTGGCTTGTGCCTCCAGCCCCAAAGGCGATGGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CCA 72 bp | ACCCTCTTGATCCATGTTCAAGTGCGCCGCTTGGTCTaGCCCACTGCTCTAACAGTCTTGGAGGGGGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: TLLIHVQVRRLV*PTALTVLEGVG Trigger: TCCCACCCCCTCCAAGACTGTTAGAGCAGTGGGCCAGACCAAGCGGCGCACTTGAACATGGATCAAGAGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR CAA 90 bp | GGGCCAACAGGGAGACCCTGCTTTGAACAAAGCAAACACAAGACTGCCTACCCTGGGTGGGAGGGAGGTTaGTGCTTGTTGCCCACCCAA | + |
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Preference number: 3 (lower is better) Translates to: GPTGRPCFEQSKHKTAYPGWEGG*CLLPTQ Trigger: TTGGGTGGGCAACAAGCACAAACCTCCCTCCCACCC...AGGGTAGGCAGTCTTGTGTTTGCTTTGTTCAAAGCAGGGTCTCCCTGTTGGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR CAA 90 bp | GCTTACAAAGGCAGACAGATTCCTGAGTCCAGGGTGACTTGGGACAGAGCAAGGGCACAGGCTGCCAGCTaGGACCCAGCACCTGACTTT | + |
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Preference number: 3 (lower is better) Translates to: AYKGRQIPESRVTWDRARAQAAS*DPAPDF Trigger: AAAGTCAGGTGCTGGGTCCAAGCTGGCAGCCTGTGC...CCTTGCTCTGTCCCAAGTCACCCTGGACTCAGGAATCTGTCTGCCTTTGTAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR GCA 72 bp | TTGCCTGTCCCTGAACTCATGAAGTCTGCCTGCCTCTaGCTCCCAAGCGCTGCAACTAAAGGTATACACACC | + |
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Preference number: 3 (lower is better) Translates to: LPVPELMKSACL*LPSAATKGIHT Trigger: GGTGTGTATACCTTTAGTTGCAGCGCTTGGGAGGCAGAGGCAGGCAGACTTCATGAGTTCAGGGACAGGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR TCA 72 bp | TCATCTCCAGCAACATGGACAACCCCACTTGTTTCTTaGGTCTCTGTAACCCTGGCTGGCCTCAGGCTCACA | + |
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Preference number: 3 (lower is better) Translates to: SSPATWTTPLVS*VSVTLAGLRLT Trigger: TGTGAGCCTGAGGCCAGCCAGGGTTACAGAGACTCAAGAAACAAGTGGGGTTGTCCATGTTGCTGGAGATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CCA 72 bp | TACAAAGGCAGACAGATTCCTGAGTCCAGGGTGACTTaGGACAGAGCAAGGTTAGACCCAGGTGTGATACAA | + |
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Preference number: 3 (lower is better) Translates to: YKGRQIPESRVT*DRARLDPGVIQ Trigger: TTGTATCACACCTGGGTCTAACCTTGCTCTGTCCCAAGTCACCCTGGACTCAGGAATCTGTCTGCCTTTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR GCA 72 bp | TTTGGAGTCGGGGTCGTTAATACATCGATCTTTGTCTaGCTTCATAGTGACACCAAGCTTGCCAGCAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: FGVGVVNTSIFV*LHSDTKLASSP Trigger: AGGACTGCTGGCAAGCTTGGTGTCACTATGAAGGCAGACAAAGATCGATGTATTAACGACCCCGACTCCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR TCA 72 bp | TGTTGCTGTTTATGCTTACAAAGGCAGACAGATTCCTaGGTCCAGGGTGACTTGGGACAGAGCAAGGTTAGA | + |
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Preference number: 3 (lower is better) Translates to: CCCLCLQRQTDS*VQGDLGQSKVR Trigger: TCTAACCTTGCTCTGTCCCAAGTCACCCTGGACTCAGGAATCTGTCTGCCTTTGTAAGCATAAACAGCAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| 3UTR GCA 72 bp | CTCTCCAATGCTACAGTGCTTCCCTACTTAGGAAGATaGAGGATTCTGCAGGATCCCAGAATGTTAAATAGC | + |
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Preference number: 3 (lower is better) Translates to: LSNATVLPYLGR*RILQDPRMLNS Trigger: GCTATTTAACATTCTGGGATCCTGCAGAATCCTGCATCTTCCTAAGTAGGGAAGCACTGTAGCATTGGAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CCA 72 bp | TCTAGCTCCAGGGCAAGTGACACTTCCTGGCTACTTTaGCATGTACTCACACGCAAAAATCTTAAAAACAAT | + |
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Preference number: 3 (lower is better) Translates to: SSSRASDTSWLL*HVLTRKNLKNN Trigger: ATTGTTTTTAAGATTTTTGCGTGTGAGTACATGCCAAAGTAGCCAGGAAGTGTCACTTGCCCTGGAGCTAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR-3UTR CAA 90 bp | ACCAGGCCCAGGCAAACACTAGTTTTTAATAGAAGACAAGTGATTAAACTTCAGCAGGGAGACCCTGCTTaGAACAAAGCAAACACAAGA | + |
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Preference number: 3 (lower is better) Translates to: TRPRQTLVFNRRQVIKLQQGDPA*NKANTR Trigger: TCTTGTGTTTGCTTTGTTCAAAGCAGGGTCTCCCTG...CTGAAGTTTAATCACTTGTCTTCTATTAAAAACTAGTGTTTGCCTGGGCCTGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CAA 72 bp | CTGCCAGCTTGGACCCAGCACCTGACTTTGAGCTGTTaGTTTCCCCGCTCCCAGTCACCCCTTCTCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LPAWTQHLTLSC*FPRSQSPLLRP Trigger: GGGCCTGAGAAGGGGTGACTGGGAGCGGGGAAACAAACAGCTCAAAGTCAGGTGCTGGGTCCAAGCTGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| CDS-3UTR TCA 90 bp | GTTTCCCCGCTCCCAGTCACCCCTTCTCAGGCCCTCTCCGAGCCGAGGCTGGTGGAAAGGGCACAGAAATaGAGAGACCTCCTGGAAATG | + |
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Preference number: 4 (lower is better) Translates to: VSPLPVTPSQALSEPRLVERAQK*RDLLEM Trigger: CATTTCCAGGAGGTCTCTTCATTTCTGTGCCCTTTC...CACCAGCCTCGGCTCGGAGAGGGCCTGAGAAGGGGTGACTGGGAGCGGGGAAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| CDS-3UTR TCA 90 bp | AGGCTGGCCAAGTGTCTGGAGCAGGGCACAGGCTGCCAGCTTGGACCCAGCACCAGCATTCTTACACTCTaGGGGGTGACCTTGACAAAG | + |
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Preference number: 4 (lower is better) Translates to: RLAKCLEQGTGCQLGPSTSILTL*GVTLTK Trigger: CTTTGTCAAGGTCACCCCTCAGAGTGTAAGAATGCT...GGTGCTGGGTCCAAGCTGGCAGCCTGTGCCCTGCTCCAGACACTTGGCCAGCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| CDS-3UTR GCA 90 bp | TGGACCCAGCACCTGACTTTGAGCTGTTTGTTTCCCCGCTCCCAGTCACCCCTTCCAAATCTCCCCAGGTaGTCCTCGATCACCGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: WTQHLTLSCLFPRSQSPLPNLPR*SSITVL Trigger: CAACACGGTGATCGAGGAGCACCTGGGGAGATTTGG...AAGGGGTGACTGGGAGCGGGGAAACAAACAGCTCAAAGTCAGGTGCTGGGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| CDS-3UTR GCA 90 bp | GCCCTGGGTATCCTGGAAATCTGTAGAGCAGGCTTGCCTGTCCCTGAACTCATGCCAAATCTCCCCAGGTaGTCCTCGATCACCGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: ALGILEICRAGLPVPELMPNLPR*SSITVL Trigger: CAACACGGTGATCGAGGAGCACCTGGGGAGATTTGG...CATGAGTTCAGGGACAGGCAAGCCTGCTCTACAGATTTCCAGGATACCCAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CAA 72 bp | GTAGCCCTGGGTATCCTGGAAATCTGTAGAGCAGGCTaGCCTGTCCCTGAACTCATGAAGTCTGCCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: VALGILEICRAG*PVPELMKSACL Trigger: GAGGCAGGCAGACTTCATGAGTTCAGGGACAGGCAAGCCTGCTCTACAGATTTCCAGGATACCCAGGGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| CDS-3UTR TCA 90 bp | AGGCTGCCAGCTTGGACCCAGCACCTGACTTTGAGCTGTTTGTTTCCCCGCTCCTCAGGCCAAGTTTCATaGTGGTGCTCTTTACCAATA | + |
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Preference number: 4 (lower is better) Translates to: RLPAWTQHLTLSCLFPRSSGQVS*WCSLPI Trigger: TATTGGTAAAGAGCACCATCATGAAACTTGGCCTGA...GGAGCGGGGAAACAAACAGCTCAAAGTCAGGTGCTGGGTCCAAGCTGGCAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| CDS-3UTR TCA 90 bp | CTGGGTATCCTGGAAATCTGTAGAGCAGGCTTGCCTGTCCCTGAACTCATGAAGGAAAGGGCACAGAAATaGAGAGACCTCCTGGAAATG | + |
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Preference number: 4 (lower is better) Translates to: LGILEICRAGLPVPELMKERAQK*RDLLEM Trigger: CATTTCCAGGAGGTCTCTTCATTTCTGTGCCCTTTC...CTTCATGAGTTCAGGGACAGGCAAGCCTGCTCTACAGATTTCCAGGATACCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| CDS-3UTR TCA 90 bp | TCTCTCCAATGCTACAGTGCTTCCCTACTTAGGAAGATGCAGGATTCTGCAGGAAGCATTCTTACACTCTaGGGGGTGACCTTGACAAAG | + |
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Preference number: 4 (lower is better) Translates to: SLQCYSASLLRKMQDSAGSILTL*GVTLTK Trigger: CTTTGTCAAGGTCACCCCTCAGAGTGTAAGAATGCT...TCCTGCAGAATCCTGCATCTTCCTAAGTAGGGAAGCACTGTAGCATTGGAGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| CDS-3UTR TCA 90 bp | AGTCAAGGTCCTAATAGACCTGGGTCATCTCCAGCAACATGGACAACCCCACTTTCAGGCCAAGTTTCATaGTGGTGCTCTTTACCAATA | + |
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Preference number: 4 (lower is better) Translates to: SQGPNRPGSSPATWTTPLSGQVS*WCSLPI Trigger: TATTGGTAAAGAGCACCATCATGAAACTTGGCCTGA...AAGTGGGGTTGTCCATGTTGCTGGAGATGACCCAGGTCTATTAGGACCTTGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| CDS-3UTR TCA 90 bp | ACCAGGCCCAGGCAAACACTAGTTTTTAATAGAAGACAAGTGATTAAACTTCAGGGTCTTCCAGGCAAATaGCACCAAATCTCCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: TRPRQTLVFNRRQVIKLQGLPGK*HQISPG Trigger: ACCTGGGGAGATTTGGTGTCATTTGCCTGGAAGACC...CTGAAGTTTAATCACTTGTCTTCTATTAAAAACTAGTGTTTGCCTGGGCCTGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| 3UTR CAA 72 bp | ATAGCCATGCTGTTTGTCCAAGGTTGCGATGCATTTTaGGTCACCTCATTTCCCAATGATCAGTTAACACTG | + |
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Preference number: 4 (lower is better) Translates to: IAMLFVQGCDAF*VTSFPNDQLTL Trigger: CAGTGTTAACTGATCATTGGGAAATGAGGTGACCAAAAATGCATCGCAACCTTGGACAAACAGCATGGCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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| CDS-3UTR CAA 90 bp | GTTTGTTTCCCCGCTCCCAGTCACCCCTTCTCAGGCCCTCTCCGAGCCGAGGCTAGAGGGACTGTCTTATaGTTAATCTTTGCTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: VCFPAPSHPFSGPLRAEARGTVL*LIFAWP Trigger: TGGCCAAGCAAAGATTAACAATAAGACAGTCCCTCT...AGCCTCGGCTCGGAGAGGGCCTGAGAAGGGGTGACTGGGAGCGGGGAAACAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233192.2 |
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| CDS-3UTR CAA 90 bp | TGCTACAGTGCTTCCCTACTTAGGAAGATGCAGGATTCTGCAGGATCCCAGAATAGAGGGACTGTCTTATaGTTAATCTTTGCTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: CYSASLLRKMQDSAGSQNRGTVL*LIFAWP Trigger: TGGCCAAGCAAAGATTAACAATAAGACAGTCCCTCT...ATTCTGGGATCCTGCAGAATCCTGCATCTTCCTAAGTAGGGAAGCACTGTAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078286.6 |
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