Pregenerated sensors for RPL6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029614Ensembl transcript IDs: ENSMUST00000031617.13
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CAGTGGACTAGCCTAGCTCACATGCTTCAGATTAAGCAGGTCTTTCCAGAAAGGAGGCAGCAGCATCACTaGCAGCCTTCTTGGCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: QWTSLAHMLQIKQVFPERRQQHH*QPSWPQ Trigger: CTGCGGCCAAGAAGGCTGGCAGTGATGCTGCTGCCT...CCTTTCTGGAAAGACCTGCTTAATCTGAAGCATGTGAGCTAGGCTAGTCCACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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| CDS-3UTR CCA 90 bp | ATTAAGCAGGTCTTTCCAGAAAGGGCCAGAGGAAGACACAGAGGAAAAGACACCAAGGGCTTCTTGCCGTaGCTCAGCAGCTTCCGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: IKQVFPERARGRHRGKDTKGFLP*LSSFRG Trigger: TCCTCGGAAGCTGCTGAGCCACGGCAAGAAGCCCTT...GGTGTCTTTTCCTCTGTGTCTTCCTCTGGCCCTTTCTGGAAAGACCTGCTTAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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| CDS-3UTR GCA 90 bp | AGCAGGACCCAGTGGACTAGCCTAGCTCACATGCTTCAGATTAAGCAGGTCTTTCAGATCGGGAGTACCTaGCAATTCCTCTCACCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SRTQWTSLAHMLQIKQVFQIGST*QFLSPG Trigger: TCCTGGTGAGAGGAATTGGCAGGTACTCCCGATCTG...AAAGACCTGCTTAATCTGAAGCATGTGAGCTAGGCTAGTCCACTGGGTCCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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| CDS-3UTR CAA 90 bp | AAAGGGCAAAACCACAGCCACAGTAAAAGGCAGCCATGGCAGTGTATGTGCCTCCGGGTGCCACCGTTCTaGTCCCCACCAACTGTTTTG | + |
|
Preference number: 5 (lower is better) Translates to: KGQNHSHSKRQPWQCMCLRVPPF*SPPTVL Trigger: CAAAACAGTTGGTGGGGACAAGAACGGTGGCACCCG...GAGGCACATACACTGCCATGGCTGCCTTTTACTGTGGCTGTGGTTTTGCCCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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| CDS-3UTR CAA 90 bp | AGCAGGACCCAGTGGACTAGCCTAGCTCACATGCTTCAGATTAAGCAGGTCTTTTGGGGCTTCGCCTTCTaGGGCTTTTTACCCTTAGGG | + |
|
Preference number: 5 (lower is better) Translates to: SRTQWTSLAHMLQIKQVFWGFAF*GFLPLG Trigger: CCCTAAGGGTAAAAAGCCCAAGAAGGCGAAGCCCCA...AAAGACCTGCTTAATCTGAAGCATGTGAGCTAGGCTAGTCCACTGGGTCCTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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| CDS-3UTR CAA 90 bp | AGCAGGACCCAGTGGACTAGCCTAGCTCACATGCTTCAGATTAAGCAGGTCTTTTCCCCACCAACTGTTTaGGTGACAGTAGCAAGGACC | + |
|
Preference number: 5 (lower is better) Translates to: SRTQWTSLAHMLQIKQVFSPPTV*VTVART Trigger: GGTCCTTGCTACTGTCACCAAAACAGTTGGTGGGGA...AAAGACCTGCTTAATCTGAAGCATGTGAGCTAGGCTAGTCCACTGGGTCCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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| CDS-3UTR CAA 90 bp | CAGTGGACTAGCCTAGCTCACATGCTTCAGATTAAGCAGGTCTTTCCAGAAAGGCGCAGAGGAACTCTGTaGATGACAAGAGGCCCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: QWTSLAHMLQIKQVFPERRRGTL*MTRGPV Trigger: GACTGGGCCTCTTGTCATCAACAGAGTTCCTCTGCG...CCTTTCTGGAAAGACCTGCTTAATCTGAAGCATGTGAGCTAGGCTAGTCCACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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| CDS-3UTR CAA 90 bp | AGCAGGACCCAGTGGACTAGCCTAGCTCACATGCTTCAGATTAAGCAGGTCTTTTTCTCAACCTTGGTCTaGGCAGCCGAGTATTTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: SRTQWTSLAHMLQIKQVFFSTLV*AAEYFL Trigger: AAGGAAATACTCGGCTGCCAAGACCAAGGTTGAGAA...AAAGACCTGCTTAATCTGAAGCATGTGAGCTAGGCTAGTCCACTGGGTCCTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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| CDS-3UTR CAA 90 bp | AGCAGGACCCAGTGGACTAGCCTAGCTCACATGCTTCAGATTAAGCAGGTCTTTTTCTTCTTCTCAACCTaGGTCTTGGCAGCCGAGTAT | + |
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Preference number: 5 (lower is better) Translates to: SRTQWTSLAHMLQIKQVFFFFST*VLAAEY Trigger: ATACTCGGCTGCCAAGACCAAGGTTGAGAAGAAGAA...AAAGACCTGCTTAATCTGAAGCATGTGAGCTAGGCTAGTCCACTGGGTCCTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031617.13 |
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