Pregenerated sensors for RPL5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058558

Ensembl transcript IDs: ENSMUST00000082223.13

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CATATATTCTACATGCTGAAGTTAGCATGCAGTTATCACTGTGACTaGAACTCATTATCTTTAAGCTCTGATAGGTTCATCTTAGTATCG	+
Preference number: 1 (lower is better) Translates to: HIFYMLKLACSYHCD*NSLSLSSDRFILVS Trigger: CGATACTAAGATGAACCTATCAGAGCTTAAAGATAATGAGTTTCAGTCACAGTGATAACTGCATGCTAACTTCAGCATGTAGAATATATG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082223.13
3UTR-3UTR CCA 90 bp	CCCCCTTCTCCTCAAACCAAATTTCACCGTTGTTCTCAAATCTTTAAAGCCATGGGAACCCATGTAAGCTaGTTTTTCCTGGAGAAAGAC	+
Preference number: 2 (lower is better) Translates to: PPSPQTKFHRCSQIFKAMGTHVS*FFLEKD Trigger: GTCTTTCTCCAGGAAAAACCAGCTTACATGGGTTCC...CATGGCTTTAAAGATTTGAGAACAACGGTGAAATTTGGTTTGAGGAGAAGGGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000082223.13
3UTR TCA 72 bp	ACCTGTGTAGCCCCAGTACCACAGAGCCTGACACTGTaGGGCAAGGCAAAGATGATAAAGATGCACAGCACC	+
Preference number: 3 (lower is better) Translates to: TCVAPVPQSLTL*GKAKMIKMHST Trigger: GGTGCTGTGCATCTTTATCATCTTTGCCTTGCCTCACAGTGTCAGGCTCTGTGGTACTGGGGCTACACAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082223.13
3UTR GCA 72 bp	AGGAAGACTAGAAACCCAAGAAACACTCATGAGATTTaGAGGAACCCATGTAAGCTGGTTTTTCCTGGAGAA	+
Preference number: 3 (lower is better) Translates to: RKTRNPRNTHEI*RNPCKLVFPGE Trigger: TTCTCCAGGAAAAACCAGCTTACATGGGTTCCTGCAAATCTCATGAGTGTTTCTTGGGTTTCTAGTCTTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082223.13
3UTR CCA 72 bp	ACTGGATTAAGTCAGGAAGACAATTCTTGCTCCTTCTaGGATGAAGGGCTATTTACTAAGAGGCATAAGCAC	+
Preference number: 3 (lower is better) Translates to: TGLSQEDNSCSF*DEGLFTKRHKH Trigger: GTGCTTATGCCTCTTAGTAAATAGCCCTTCATCCCAGAAGGAGCAAGAATTGTCTTCCTGACTTAATCCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082223.13
CDS-3UTR GCA 90 bp	CCTCCCAGGAAGACTAGAAACCCAAGAAACACTCATGAGATTTGCAGGAACCCAAGTTCGGGCAAGACCTaGATCCAGATAGCAAGTGAA	+
Preference number: 4 (lower is better) Translates to: PPRKTRNPRNTHEICRNPSSGKT*IQIASE Trigger: TTCACTTGCTATCTGGATGCAGGTCTTGCCCGAACT...TGGGTTCCTGCAAATCTCATGAGTGTTTCTTGGGTTTCTAGTCTTCCTGGGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082223.13
CDS-3UTR CCA 90 bp	CCTCCCAGGAAGACTAGAAACCCAAGAAACACTCATGAGATTTGCAGGAACCCATACTTATTCTTGTCCTaGATCACCAATCGTTTTCGA	+
Preference number: 4 (lower is better) Translates to: PPRKTRNPRNTHEICRNPYLFLS*ITNRFR Trigger: TCGAAAACGATTGGTGATCCAGGACAAGAATAAGTA...TGGGTTCCTGCAAATCTCATGAGTGTTTCTTGGGTTTCTAGTCTTCCTGGGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082223.13
3UTR CAA 72 bp	TGGATTAGCACCAGTTGTTCACTTCCAAGATTGACCTaGAGATACTTTCTTCCCACTAATCAATTTGTTTGT	+
Preference number: 4 (lower is better) Translates to: WISTSCSLPRLT*RYFLPTNQFVC Trigger: ACAAACAAATTGATTAGTGGGAAGAAAGTATCTCAAGGTCAATCTTGGAAGTGAACAACTGGTGCTAATCCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082223.13
CDS-3UTR CAA 90 bp	CCTCCCAGGAAGACTAGAAACCCAAGAAACACTCATGAGATTTGCAGGAACCCAGTGTTGTACTTATTCTaGTCCTGGATCACCAATCGT	+
Preference number: 5 (lower is better) Translates to: PPRKTRNPRNTHEICRNPVLYLF*SWITNR Trigger: ACGATTGGTGATCCAGGACAAGAATAAGTACAACAC...TGGGTTCCTGCAAATCTCATGAGTGTTTCTTGGGTTTCTAGTCTTCCTGGGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082223.13