Pregenerated sensors for RPL41 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093674

Ensembl transcript IDs: ENSMUST00000176010.8, ENSMUST00000176683.8, ENSMUST00000176906.2, ENSMUST00000177163.8

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 72 bp	AGACTCATTACCGATGGCAGCACACAGTCCGATAGCTaGTCCCGGCCCTCAGCATCCCTCACTTCTGCTCCT	+
Preference number: 4 (lower is better) Translates to: RLITDGSTQSDS*SRPSASLTSAP Trigger: AGGAGCAGAAGTGAGGGATGCTGAGGGCCGGGACAAGCTATCGGACTGTGTGCTGCCATCGGTAATGAGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000176010.8 ENSMUST00000176683.8 ENSMUST00000177163.8
CDS-3UTR CCA 90 bp	TCAGCTGACTGCAAGAGGGTTTATTGTACACGAGCTACACTTGGCCACAAGAGACGTAGGTGCACGGGCTaGCTTACTTGGACCTCTGCC	+
Preference number: 4 (lower is better) Translates to: SADCKRVYCTRATLGHKRRRCTG*LTWTSA Trigger: GGCAGAGGTCCAAGTAAGCCAGCCCGTGCACCTACG...TCTCTTGTGGCCAAGTGTAGCTCGTGTACAATAAACCCTCTTGCAGTCAGCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176906.2
CDS-3UTR CCA 90 bp	TCAGCTGACTGCAAGAGGGTTTATTGTACACGAGCTACACTTGGCCACAAGAGACGCTTCAGCCTGGAATaGAAGGCACACAAACCTGCG	+
Preference number: 4 (lower is better) Translates to: SADCKRVYCTRATLGHKRRFSLE*KAHKPA Trigger: CGCAGGTTTGTGTGCCTTCCATTCCAGGCTGAAGCG...TCTCTTGTGGCCAAGTGTAGCTCGTGTACAATAAACCCTCTTGCAGTCAGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176906.2
CDS-3UTR GCA 90 bp	TCAGCTGACTGCAAGAGGGTTTATTGTACACGAGCTACACTTGGCCACAAGAGAGAAGGCACACAAACCTaGGCATTCTCTTCTTCCGCC	+
Preference number: 4 (lower is better) Translates to: SADCKRVYCTRATLGHKREGTQT*AFSSSA Trigger: GGCGGAAGAAGAGAATGCGCAGGTTTGTGTGCCTTC...TCTCTTGTGGCCAAGTGTAGCTCGTGTACAATAAACCCTCTTGCAGTCAGCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176906.2
CDS-3UTR CCA 90 bp	TCAGCTGACTGCAAGAGGGTTTATTGTACACGAGCTACACTTGGCCACAAGAGATCTTGCGCTTCAGCCTaGAATGGAAGGCACACAAAC	+
Preference number: 4 (lower is better) Translates to: SADCKRVYCTRATLGHKRSCASA*NGRHTN Trigger: GTTTGTGTGCCTTCCATTCCAGGCTGAAGCGCAAGA...TCTCTTGTGGCCAAGTGTAGCTCGTGTACAATAAACCCTCTTGCAGTCAGCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176906.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu