Pregenerated sensors for RPL4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032399Ensembl transcript IDs: ENSMUST00000034966.9
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGAAACATCTATGCGGTCTCTACTTaGTCTCTGGAATTTAACAAT | + |
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Preference number: 2 (lower is better) Translates to: HILPLVLQKVNFKGLGNIYAVST*SLEFNN Trigger: ATTGTTAAATTCCAGAGAGCAAGTAGAGACCGCATA...GATGTTTCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| 3UTR CAA 90 bp | TTCTATAATTCTGATGACCTAAGTTTGACCATGAAGTCTCACATCTaGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: FYNSDDLSLTMKSHI*PLVLQKVNFKGLGN Trigger: GTTTCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGACTTCATGGTCAAACTTAGGTCATCAGAATTATAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| 3UTR TCA 72 bp | GTCACACAAGGGTTTGTCACCACATGTTTGATTTATTaGAATATGCGGTCTCTACTTGCTCTCTGGAATTTA | + |
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Preference number: 3 (lower is better) Translates to: VTQGFVTTCLIY*NMRSLLALWNL Trigger: TAAATTCCAGAGAGCAAGTAGAGACCGCATATTTCAATAAATCAAACATGTGGTGACAAACCCTTGTGTGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR TCA 90 bp | AGTCACACAAGGGTTTGTCACCACATGTTTGATTTATTGAAATATGCGGTCTCTCGGAGTACACCGATATaGGGGGACGGGCACAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SHTRVCHHMFDLLKYAVSRSTPI*GDGHKP Trigger: TGGCTTGTGCCCGTCCCCTCATATCGGTGTACTCCG...AGAGACCGCATATTTCAATAAATCAAACATGTGGTGACAAACCCTTGTGTGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR CCA 90 bp | AAGTCTCACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGATTTCCAAAGGCACCCTaGCCAGATCGGTGGGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KSHILPLVLQKVNFKGLGFPKAP*PDRWVP Trigger: TGGGACCCACCGATCTGGCCAGGGTGCCTTTGGAAA...TCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | TGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGAAACATCCACAATTGGGTTGTATTCACTCTaGGGTGCCAACGACGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: CHLFFKRLISRGLETSTIGLYSL*GANDAR Trigger: CCTGGCGTCGTTGGCACCGCAGAGTGAATACAACCC...AATTGTGGATGTTTCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | AAGTCTCACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGACGCTGGCTTCTTGTCTaGAGTCCCCTTCTCTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: KSHILPLVLQKVNFKGLGRWLLV*SPLLWN Trigger: GTTCCAGAGAAGGGGACTGCAGACAAGAAGCCAGCG...TCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | AAGTCTCACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGACAGCCTTCCGCCAAGTaGCATACAGCTCATCCAACT | + |
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Preference number: 4 (lower is better) Translates to: KSHILPLVLQKVNFKGLGQPSAK*HTAHPT Trigger: AGTTGGATGAGCTGTATGGCACTTGGCGGAAGGCTG...TCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | AAGTCTCACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGACAGTGCAGTAGCTGCTaGTTCCAGCTTTTTCACACG | + |
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Preference number: 4 (lower is better) Translates to: KSHILPLVLQKVNFKGLGQCSSC*FQLFHT Trigger: CGTGTGAAAAAGCTGGAAGCAGCAGCTACTGCACTG...TCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | AAGAGTCACACAAGGGTTTGTCACCACATGTTTGATTTATTGAAATATGCGGTCGGATTTGGTTGCCAGTaGAGTAGCTGCTGCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: KSHTRVCHHMFDLLKYAVGFGCQ*SSCCFQ Trigger: CTGGAAGCAGCAGCTACTGCACTGGCAACCAAATCC...GACCGCATATTTCAATAAATCAAACATGTGGTGACAAACCCTTGTGTGACTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR CCA 90 bp | CACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGAAACATCCAGGCTTCTGCTTCTTaGCATCCACCTTCTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: HILPLVLQKVNFKGLGNIQASAS*HPPSFL Trigger: AAGGAAAGAAGGTGGATGCCAAGAAGCAGAAGCCTG...GATGTTTCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR TCA 90 bp | AAGAGTCACACAAGGGTTTGTCACCACATGTTTGATTTATTGAAATATGCGGTCTTCACACGAAGTTTGTaGTTTCTGGCCTGGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: KSHTRVCHHMFDLLKYAVFTRSL*FLAWRR Trigger: TCTTCGCCAGGCCAGAAATCACAAACTTCGTGTGAA...GACCGCATATTTCAATAAATCAAACATGTGGTGACAAACCCTTGTGTGACTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | CTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGAAACATCCACAATTTAAGACTTCTCGGATTTGGTTaGCAGTGCAGTAGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LVLQKVNFKGLGNIHNLRLLGFG*QCSSCC Trigger: GCAGCAGCTACTGCACTGGCAACCAAATCCGAGAAG...TCTTAAATTGTGGATGTTTCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | CACATGTTTGATTTATTGAAATATGCGGTCTCTACTTGCTCTCTGGAATTTAACTTCCCTGCAGGCTTCTaGTTCTTGGCATCCACCTTC | + |
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Preference number: 4 (lower is better) Translates to: HMFDLLKYAVSTCSLEFNFPAGF*FLASTF Trigger: GAAGGTGGATGCCAAGAAGCAGAAGCCTGCAGGGAA...GTTAAATTCCAGAGAGCAAGTAGAGACCGCATATTTCAATAAATCAAACATGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | AAGAGTCACACAAGGGTTTGTCACCACATGTTTGATTTATTGAAATATGCGGTCAGTAGGCTTCTTCTCTaGTGGTTTCTTGGCAACCAC | + |
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Preference number: 4 (lower is better) Translates to: KSHTRVCHHMFDLLKYAVSRLLL*WFLGNH Trigger: GTGGTTGCCAAGAAACCAGCAGAGAAGAAGCCTACT...GACCGCATATTTCAATAAATCAAACATGTGGTGACAAACCCTTGTGTGACTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR GCA 90 bp | CACATGTTTGATTTATTGAAATATGCGGTCTCTACTTGCTCTCTGGAATTTAACTGCCAGTGCAGTAGCTaGTGCTTCCAGCTTTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: HMFDLLKYAVSTCSLEFNCQCSS*CFQLFH Trigger: GTGAAAAAGCTGGAAGCAGCAGCTACTGCACTGGCA...GTTAAATTCCAGAGAGCAAGTAGAGACCGCATATTTCAATAAATCAAACATGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| 3UTR CAA 72 bp | TCTGATGACCTAAGTTTGACCATGAAGTCTCACATCTaGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SDDLSLTMKSHI*PLVLQKVNFKG Trigger: CCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGACTTCATGGTCAAACTTAGGTCATCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR CCA 90 bp | AAGTCTCACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGATGTTTTTCCTCAAGTTaGTGTGAACGAAGTTCACAA | + |
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Preference number: 4 (lower is better) Translates to: KSHILPLVLQKVNFKGLGCFSSS*CERSSQ Trigger: TTGTGAACTTCGTTCACACCAACTTGAGGAAAAACA...TCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGACTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| 3UTR CAA 72 bp | AGTCACACAAGGGTTTGTCACCACATGTTTGATTTATaGAAATATGCGGTCTCTACTTGCTCTCTGGAATTT | + |
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Preference number: 4 (lower is better) Translates to: SHTRVCHHMFDL*KYAVSTCSLEF Trigger: AAATTCCAGAGAGCAAGTAGAGACCGCATATTTCAATAAATCAAACATGTGGTGACAAACCCTTGTGTGACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS CCA 90 bp | TCCTTTCTTGCCTACCGCTGGCTTCTTGTCTGCAGTCCCCTTCTCTaGAACAACCTTCTCGGATTTGGTTGCCAGTGCAGTAGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SFLAYRWLLVCSPLL*NNLLGFGCQCSSCC Trigger: GCAGCAGCTACTGCACTGGCAACCAAATCCGAGAAGGTTGTTCCAGAGAAGGGGACTGCAGACAAGAAGCCAGCGGTAGGCAAGAAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS GCA 90 bp | CTTCTCTGGAACAACCTTCTCGGATTTGGTTGCCAGTGCAGTAGCTaGTGCTTCCAGCTTTTTCACACGAAGTTTGTGATTTCTGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: LLWNNLLGFGCQCSS*CFQLFHTKFVISGL Trigger: CAGGCCAGAAATCACAAACTTCGTGTGAAAAAGCTGGAAGCAGCAGCTACTGCACTGGCAACCAAATCCGAGAAGGTTGTTCCAGAGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR CAA 90 bp | TCTCACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGAAACCCTACCGCTGGCTTCTaGTCTGCAGTCCCCTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: SHILPLVLQKVNFKGLGNPTAGF*SAVPFS Trigger: AGAGAAGGGGACTGCAGACAAGAAGCCAGCGGTAGG...GTTTCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR CAA 90 bp | TCTCACATCTTGCCACTTGTTCTTCAAAAGGTTAATTTCAAGGGGCTTGGAAACGGTCGAATGGGAGCTTaGAACACAGCTGGCAAAGTG | + |
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Preference number: 5 (lower is better) Translates to: SHILPLVLQKVNFKGLGNGRMGA*NTAGKV Trigger: CACTTTGCCAGCTGTGTTCAAAGCTCCCATTCGACC...GTTTCCAAGCCCCTTGAAATTAACCTTTTGAAGAACAAGTGGCAAGATGTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS-3UTR CAA 90 bp | AAGAGTCACACAAGGGTTTGTCACCACATGTTTGATTTATTGAAATATGCGGTCGCAGGCTTCTGCTTCTaGGCATCCACCTTCTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: KSHTRVCHHMFDLLKYAVAGFCF*ASTFFP Trigger: AGGAAAGAAGGTGGATGCCAAGAAGCAGAAGCCTGC...GACCGCATATTTCAATAAATCAAACATGTGGTGACAAACCCTTGTGTGACTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS CCA 72 bp | GCCTACCGCTGGCTTCTTGTCTGCAGTCCCCTTCTCTaGAACAACCTTCTCGGATTTGGTTGCCAGTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: AYRWLLVCSPLL*NNLLGFGCQCS Trigger: ACTGCACTGGCAACCAAATCCGAGAAGGTTGTTCCAGAGAAGGGGACTGCAGACAAGAAGCCAGCGGTAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS CAA 72 bp | TCTGCAGTCCCCTTCTCTGGAACAACCTTCTCGGATTaGGTTGCCAGTGCAGTAGCTGCTGCTTCCAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: SAVPFSGTTFSD*VASAVAAASSF Trigger: AAAGCTGGAAGCAGCAGCTACTGCACTGGCAACCAAATCCGAGAAGGTTGTTCCAGAGAAGGGGACTGCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS GCA 72 bp | CTTCTCTGGAACAACCTTCTCGGATTTGGTTGCCAGTaGAGTAGCTGCTGCTTCCAGCTTTTTCACACGAAG | + |
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Preference number: 6 (lower is better) Translates to: LLWNNLLGFGCQ*SSCCFQLFHTK Trigger: CTTCGTGTGAAAAAGCTGGAAGCAGCAGCTACTGCACTGGCAACCAAATCCGAGAAGGTTGTTCCAGAGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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| CDS GCA 72 bp | AACAACCTTCTCGGATTTGGTTGCCAGTGCAGTAGCTaGTGCTTCCAGCTTTTTCACACGAAGTTTGTGATT | + |
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Preference number: 6 (lower is better) Translates to: NNLLGFGCQCSS*CFQLFHTKFVI Trigger: AATCACAAACTTCGTGTGAAAAAGCTGGAAGCAGCAGCTACTGCACTGGCAACCAAATCCGAGAAGGTTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034966.9 |
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