Pregenerated sensors for RPL39L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039209

Ensembl transcript IDs: ENSMUST00000044103.6, ENSMUST00000121292.8

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	CATTTAGAAGGCCGAGGAAGGAAGATCGTGAGTTTTAGGGCAGTCTaGACTTGTCTCAACCCCAAACTACACAAACAAGATCCAGGATAT	+
Preference number: 1 (lower is better) Translates to: HLEGRGRKIVSFRAV*TCLNPKLHKQDPGY Trigger: ATATCCTGGATCTTGTTTGTGTAGTTTGGGGTTGAGACAAGTCCAGACTGCCCTAAAACTCACGATCTTCCTTCCTCGGCCTTCTAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044103.6
3UTR CCA 72 bp	GGCCGAGGAAGGAAGATCGTGAGTTTTAGGGCAGTCTaGACTTGTCTCAACCCCAAACTACACAAACAAGAT	+
Preference number: 3 (lower is better) Translates to: GRGRKIVSFRAV*TCLNPKLHKQD Trigger: ATCTTGTTTGTGTAGTTTGGGGTTGAGACAAGTCCAGACTGCCCTAAAACTCACGATCTTCCTTCCTCGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044103.6
3UTR CAA 72 bp	AAACAAGATCCAGGATATCGCTCACTGATAGAATACTaGTCTATTATGCAGATGATCCTGAACCATAAAACA	+
Preference number: 4 (lower is better) Translates to: KQDPGYRSLIEY*SIMQMILNHKT Trigger: TGTTTTATGGTTCAGGATCATCTGCATAATAGACAAGTATTCTATCAGTGAGCGATATCCTGGATCTTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044103.6
CDS-3UTR CAA 90 bp	AAACTTATATTCCTAAGAAACACACTCAGCTGTCCAGACAGCGGTAACGCTGTATGTCTCCGCTTGGAGTaGTACATGATTTTATTGCCA	+
Preference number: 5 (lower is better) Translates to: KLIFLRNTLSCPDSGNAVCLRLE*YMILLP Trigger: TGGCAATAAAATCATGTACAACTCCAAGCGGAGACA...TACAGCGTTACCGCTGTCTGGACAGCTGAGTGTGTTTCTTAGGAATATAAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044103.6 ENSMUST00000121292.8
CDS-3UTR CAA 90 bp	GATCCAGGATATCGCTCACTGATAGAATACTTGTCTATTATGCAGATGATCCTGTGTCTCCGCTTGGAGTaGTACATGATTTTATTGCCA	+
Preference number: 5 (lower is better) Translates to: DPGYRSLIEYLSIMQMILCLRLE*YMILLP Trigger: TGGCAATAAAATCATGTACAACTCCAAGCGGAGACA...CAGGATCATCTGCATAATAGACAAGTATTCTATCAGTGAGCGATATCCTGGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044103.6

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