Pregenerated sensors for RPL31 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073702Ensembl transcript IDs: ENSMUST00000086535.12, ENSMUST00000194746.6
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCACCCACGCATCCTGCCCCAGCTGGAGGCCACTGCACAACCCATaGCCTGTGCCGCCCTTCCCAGCAACCTCTGTACTATCTTCCCCC | + |
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Preference number: 1 (lower is better) Translates to: STHASCPSWRPLHNP*PVPPFPATSVLSSP Trigger: GGGGGAAGATAGTACAGAGGTTGCTGGGAAGGGCGGCACAGGCCATGGGTTGTGCAGTGGCCTCCAGCTGGGGCAGGATGCGTGGGTGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194746.6 |
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| 3UTR CCA 90 bp | GGGCAGACACATCCCAGAGATGAGCTACTGGTTGGCAAAGATGGCTaGAAAGGCAGAGTTGATGTCCCAGGTCCAATTCCTGGGACCCAC | + |
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Preference number: 1 (lower is better) Translates to: GQTHPRDELLVGKDG*KGRVDVPGPIPGTH Trigger: GTGGGTCCCAGGAATTGGACCTGGGACATCAACTCTGCCTTTCCAGCCATCTTTGCCAACCAGTAGCTCATCTCTGGGATGTGTCTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| 3UTR-3UTR TCA 90 bp | GATGGCTGGAAAGGCAGAGTTGATGTCCCAGGTCCAATTCCTGGGACCCACACAAGGCAGGTGGATTTCTaGGTTCAAGGCCACCCTATT | + |
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Preference number: 2 (lower is better) Translates to: DGWKGRVDVPGPIPGTHTRQVDF*VQGHPI Trigger: AATAGGGTGGCCTTGAACTCAGAAATCCACCTGCCT...TGTGTGGGTCCCAGGAATTGGACCTGGGACATCAACTCTGCCTTTCCAGCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| 3UTR-3UTR TCA 90 bp | GAGGGCAGACACATCCCAGAGATGAGCTACTGGTTGGCAAAGATGGCTGGAAAGCAAAAATTCCACCCATaGGGCAGACAACAGAAAGGA | + |
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Preference number: 2 (lower is better) Translates to: EGRHIPEMSYWLAKMAGKQKFHP*GRQQKG Trigger: TCCTTTCTGTTGTCTGCCTCATGGGTGGAATTTTTG...CTTTCCAGCCATCTTTGCCAACCAGTAGCTCATCTCTGGGATGTGTCTGCCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| 3UTR-3UTR TCA 90 bp | AAATGTCATTTTGAGGGCAGACACATCCCAGAGATGAGCTACTGGTTGGCAAAGCTGGAAAGGCAGAGTTaGTGTCCCAGGTCCAATTCC | + |
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Preference number: 2 (lower is better) Translates to: KCHFEGRHIPEMSYWLAKLERQS*CPRSNS Trigger: GGAATTGGACCTGGGACATCAACTCTGCCTTTCCAG...CTTTGCCAACCAGTAGCTCATCTCTGGGATGTGTCTGCCCTCAAAATGACATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| 3UTR-3UTR TCA 90 bp | ATGTTTCACGTATTTCTAATTTCCCATGTACCCAGAACAGAGATTCTCAGATTAAGGAAAACCAAACCCTaGAGGCAGTTCTGCAACTTT | + |
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Preference number: 2 (lower is better) Translates to: MFHVFLISHVPRTEILRLRKTKP*RQFCNF Trigger: AAAGTTGCAGAACTGCCTTCAGGGTTTGGTTTTCCT...TAATCTGAGAATCTCTGTTCTGGGTACATGGGAAATTAGAAATACGTGAAACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| 3UTR CCA 72 bp | CATCCCAGAGATGAGCTACTGGTTGGCAAAGATGGCTaGAAAGGCAGAGTTGATGTCCCAGGTCCAATTCCT | + |
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Preference number: 3 (lower is better) Translates to: HPRDELLVGKDG*KGRVDVPGPIP Trigger: AGGAATTGGACCTGGGACATCAACTCTGCCTTTCCAGCCATCTTTGCCAACCAGTAGCTCATCTCTGGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| CDS-3UTR CCA 90 bp | GCTGGAGGCCACTGCACAACCCATGGCCTGTGCCGCCCTTCCCAGCAACCTCTGTACTCGGATGCGATATaGAACGTTCCTTATTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: AGGHCTTHGLCRPSQQPLYSDAI*NVPYSL Trigger: AAGGGAATAAGGAACGTTCCATATCGCATCCGAGTA...CAGAGGTTGCTGGGAAGGGCGGCACAGGCCATGGGTTGTGCAGTGGCCTCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194746.6 |
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| 3UTR CAA 72 bp | AGCTACTGGTTGGCAAAGATGGCTGGAAAGGCAGAGTaGATGTCCCAGGTCCAATTCCTGGGACCCACACAA | + |
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Preference number: 4 (lower is better) Translates to: SYWLAKMAGKAE*MSQVQFLGPTQ Trigger: TTGTGTGGGTCCCAGGAATTGGACCTGGGACATCAACTCTGCCTTTCCAGCCATCTTTGCCAACCAGTAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| 3UTR CAA 72 bp | TTTGAGGGCAGACACATCCCAGAGATGAGCTACTGGTaGGCAAAGATGGCTGGAAAGGCAGAGTTGATGTCC | + |
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Preference number: 4 (lower is better) Translates to: FEGRHIPEMSYW*AKMAGKAELMS Trigger: GGACATCAACTCTGCCTTTCCAGCCATCTTTGCCAACCAGTAGCTCATCTCTGGGATGTGTCTGCCCTCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| CDS-3UTR CCA 90 bp | GCCACCCTATTCTATAGAACAAGCAGTGCCACAAGAAACCCTGTTTCAAAACCATACTCGGATGCGATATaGAACGTTCCTTATTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: ATLFYRTSSATRNPVSKPYSDAI*NVPYSL Trigger: AAGGGAATAAGGAACGTTCCATATCGCATCCGAGTA...TGGTTTTGAAACAGGGTTTCTTGTGGCACTGCTTGTTCTATAGAATAGGGTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086535.12 |
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| CDS-3UTR CAA 90 bp | CCGCCCTTCCCAGCAACCTCTGTACTATCTTCCCCCAGCCAGTTAGTTTTTAAGCTGGGATACTTACTTTaGAATGTGGTAACAGGCACG | + |
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Preference number: 5 (lower is better) Translates to: PPFPATSVLSSPSQLVFKLGYLL*NVVTGT Trigger: CGTGCCTGTTACCACATTCAAAAGTAAGTATCCCAG...CTTAAAAACTAACTGGCTGGGGGAAGATAGTACAGAGGTTGCTGGGAAGGGCGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000194746.6 |
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