Pregenerated sensors for RPL29 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048758Ensembl transcript IDs: ENSMUST00000059802.7, ENSMUST00000098994.7, ENSMUST00000150576.8, ENSMUST00000213448.2, ENSMUST00000214067.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTGCCTGAGTTTATTTGTAAGAACAGCATAGGACACTaGTCATCTGCAAATAGTGTGTGGGGAGGTGTGTCA | + |
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Preference number: 3 (lower is better) Translates to: LPEFICKNSIGH*SSANSVWGGVS Trigger: TGACACACCTCCCCACACACTATTTGCAGATGACCAGTGTCCTATGCTGTTCTTACAAATAAACTCAGGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059802.7 ENSMUST00000150576.8 ENSMUST00000214067.2 |
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| CDS CAA 72 bp | CTGGGCCTTAGCTGGAGCTTTGGCCCCTGCCTTGGTTaGGACCTTAGGCTTCGGTTGGCAGAGCCTCTGACC | + |
|
Preference number: 6 (lower is better) Translates to: LGLSWSFGPCLG*DLRLRLAEPLT Trigger: GGTCAGAGGCTCTGCCAACCGAAGCCTAAGGTCCAAACCAAGGCAGGGGCCAAAGCTCCAGCTAAGGCCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059802.7 ENSMUST00000098994.7 ENSMUST00000150576.8 ENSMUST00000213448.2 |
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| CDS CAA 90 bp | AGCTGGAGCTTTGGCCCCTGCCTTGGTTTGGACCTTAGGCTTCGGTaGGCAGAGCCTCTGACCCTTGGCCATGTAGCTTCGAATCCGCTT | + |
|
Preference number: 6 (lower is better) Translates to: SWSFGPCLGLDLRLR*AEPLTLGHVASNPL Trigger: AAGCGGATTCGAAGCTACATGGCCAAGGGTCAGAGGCTCTGCCAACCGAAGCCTAAGGTCCAAACCAAGGCAGGGGCCAAAGCTCCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059802.7 ENSMUST00000098994.7 ENSMUST00000150576.8 ENSMUST00000213448.2 |
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| CDS CAA 72 bp | TTTGGCCCCTGCCTTGGTTTGGACCTTAGGCTTCGGTaGGCAGAGCCTCTGACCCTTGGCCATGTAGCTTCG | + |
|
Preference number: 6 (lower is better) Translates to: FGPCLGLDLRLR*AEPLTLGHVAS Trigger: CGAAGCTACATGGCCAAGGGTCAGAGGCTCTGCCAACCGAAGCCTAAGGTCCAAACCAAGGCAGGGGCCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059802.7 ENSMUST00000098994.7 ENSMUST00000150576.8 ENSMUST00000213448.2 |
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