Pregenerated sensors for RPL28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030432Ensembl transcript IDs: ENSMUST00000032597.12, ENSMUST00000126794.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCCTGAAGTCATTTACCCTCACTCCTGTTTCCACAGGAATCAACTaGATGTCCTGCACAAGCCGCTCTCACTCCTGTTGGTACCCAGAT | + |
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Preference number: 1 (lower is better) Translates to: TLKSFTLTPVSTGIN*MSCTSRSHSCWYPD Trigger: ATCTGGGTACCAACAGGAGTGAGAGCGGCTTGTGCAGGACATTCAGTTGATTCCTGTGGAAACAGGAGTGAGGGTAAATGACTTCAGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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| 3UTR CCA 90 bp | ACTAAAGACAGCGCAGAGCCACAGCTCAATGAGCACAAAACATTTTaGAGGCCTAATGGAAGTCAGTGGACTCTTTATTGCTTCGGGCGT | + |
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Preference number: 1 (lower is better) Translates to: TKDSAEPQLNEHKTF*RPNGSQWTLYCFGR Trigger: ACGCCCGAAGCAATAAAGAGTCCACTGACTTCCATTAGGCCTCCAAAATGTTTTGTGCTCATTGAGCTGTGGCTCTGCGCTGTCTTTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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| 3UTR-3UTR CCA 90 bp | ATGTCCTGCACAAGCCGCTCTCACTCCTGTTGGTACCCAGATGGCCCTGAACAGGAGCACAAAACATTTTaGAGGCCTAATGGAAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: MSCTSRSHSCWYPDGPEQEHKTF*RPNGSQ Trigger: CTGACTTCCATTAGGCCTCCAAAATGTTTTGTGCTC...CTGTTCAGGGCCATCTGGGTACCAACAGGAGTGAGAGCGGCTTGTGCAGGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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| 3UTR TCA 72 bp | AAGCCGCTCTCACTCCTGTTGGTACCCAGATGGCCCTaGACAGCTTCTATCCCCAACAACCCTCACTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: KPLSLLLVPRWP*TASIPNNPHSR Trigger: TCTGGAGTGAGGGTTGTTGGGGATAGAAGCTGTTCAGGGCCATCTGGGTACCAACAGGAGTGAGAGCGGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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| 3UTR TCA 72 bp | TCATTTACCCTCACTCCTGTTTCCACAGGAATCAACTaGATGTCCTGCACAAGCCGCTCTCACTCCTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: SFTLTPVSTGIN*MSCTSRSHSCW Trigger: CCAACAGGAGTGAGAGCGGCTTGTGCAGGACATTCAGTTGATTCCTGTGGAAACAGGAGTGAGGGTAAATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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| CDS-3UTR CCA 90 bp | ATGTCCTGCACAAGCCGCTCTCACTCCTGTTGGTACCCAGATGGCCCTGAACAGCACTGGCCCTGCGGATaGCCGCCATACGCAGATCAG | + |
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Preference number: 4 (lower is better) Translates to: MSCTSRSHSCWYPDGPEQHWPCG*PPYADQ Trigger: CTGATCTGCGTATGGCGGCCATCCGCAGGGCCAGTG...CTGTTCAGGGCCATCTGGGTACCAACAGGAGTGAGAGCGGCTTGTGCAGGACAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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| CDS-3UTR GCA 90 bp | TTTTGGAGGCCTAATGGAAGTCAGTGGACTCTTTATTGCTTCGGGCGTGTGGGGGGATGGCACTGGCCCTaGGGATGGCCGCCATACGCA | + |
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Preference number: 4 (lower is better) Translates to: FWRPNGSQWTLYCFGRVGGWHWP*GWPPYA Trigger: TGCGTATGGCGGCCATCCGCAGGGCCAGTGCCATCC...CCCCACACGCCCGAAGCAATAAAGAGTCCACTGACTTCCATTAGGCCTCCAAAA 58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000032597.12 ENSMUST00000126794.2 |
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| CDS-3UTR CCA 90 bp | TTTGGAGGCCTAATGGAAGTCAGTGGACTCTTTATTGCTTCGGGCGTGTGGGGCCACTGGCCCTGCGGATaGCCGCCATACGCAGATCAG | + |
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Preference number: 4 (lower is better) Translates to: FGGLMEVSGLFIASGVWGHWPCG*PPYADQ Trigger: CTGATCTGCGTATGGCGGCCATCCGCAGGGCCAGTG...GCCCCACACGCCCGAAGCAATAAAGAGTCCACTGACTTCCATTAGGCCTCCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032597.12 ENSMUST00000126794.2 |
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| CDS-3UTR GCA 90 bp | TCAGGAGTATCACTGTTTCACACATCAGAGCATCTGATAACTGAAGACTTCACTGGATGGCACTGGCCCTaGGGATGGCCGCCATACGCA | + |
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Preference number: 4 (lower is better) Translates to: SGVSLFHTSEHLITEDFTGWHWP*GWPPYA Trigger: TGCGTATGGCGGCCATCCGCAGGGCCAGTGCCATCC...AGTGAAGTCTTCAGTTATCAGATGCTCTGATGTGTGAAACAGTGATACTCCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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| CDS-3UTR GCA 90 bp | TCAGGAGTATCACTGTTTCACACATCAGAGCATCTGATAACTGAAGACTTCACTGATTATTTGGCTCCGTaGTGTACGTCTGCTTATTCC | + |
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Preference number: 4 (lower is better) Translates to: SGVSLFHTSEHLITEDFTDYLAP*CTSAYS Trigger: GGAATAAGCAGACGTACAGCACGGAGCCAAATAATC...AGTGAAGTCTTCAGTTATCAGATGCTCTGATGTGTGAAACAGTGATACTCCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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| CDS-3UTR CAA 90 bp | AGGTCAGCAATTCACACTGAAATTCTACTGCAGCAGCACAAAGTCCCAGCTGACGGGCTTTCAGATTATTaGGCTCCGTGCTGTACGTCT | + |
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Preference number: 5 (lower is better) Translates to: RSAIHTEILLQQHKVPADGLSDY*APCCTS Trigger: AGACGTACAGCACGGAGCCAAATAATCTGAAAGCCC...GTCAGCTGGGACTTTGTGCTGCTGCAGTAGAATTTCAGTGTGAATTGCTGACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032597.12 |
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