RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPL27A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046364

Ensembl transcript IDs: ENSMUST00000143107.2, ENSMUST00000156921.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTAGTTCAAAGGTCACAGCTCTGGTTCTACAGTATTCCCAACCAGTaGTGTCCTGTTGCAGGTAGGCATGCTCCCTTGGAACAACACCTA +
Preference number: 1 (lower is better)
Translates to: VVQRSQLWFYSIPNQ*CPVAGRHAPLEQHL
Trigger: TAGGTGTTGTTCCAAGGGAGCATGCCTACCTGCAACAGGACATCACTGGTTGGGAATACTGTAGAACCAGAGCTGTGACCTTTGAACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
3UTR CCA 90 bp TCCCTTGGAACAACACCTAGATGCCACCAACAAAGCGAAGCTGGATaGAACCTACTACCTCCTCCTCCCCTTAAGTTTTCCATGCTAATC +
Preference number: 1 (lower is better)
Translates to: SLGTTPRCHQQSEAG*NLLPPPPLKFSMLI
Trigger: GATTAGCATGGAAAACTTAAGGGGAGGAGGAGGTAGTAGGTTCCATCCAGCTTCGCTTTGTTGGTGGCATCTAGGTGTTGTTCCAAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
3UTR-3UTR GCA 90 bp CTACCTCCTCCTCCCCTTAAGTTTTCCATGCTAATCTGTCCAGTATTAAGTGACGGCAGATTTCCAACATaGAGACAAGGAAGGATGCAA +
Preference number: 2 (lower is better)
Translates to: LPPPPLKFSMLICPVLSDGRFPT*RQGRMQ
Trigger: TTGCATCCTTCCTTGTCTGCATGTTGGAAATCTGCC...GTCACTTAATACTGGACAGATTAGCATGGAAAACTTAAGGGGAGGAGGAGGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
3UTR-3UTR CCA 90 bp AAGGTCACAGCTCTGGTTCTACAGTATTCCCAACCAGTGATGTCCTGTTGCAGGCAGGTTTCTTCACTTTaGACTGAAAGTAATGGCATT +
Preference number: 2 (lower is better)
Translates to: KVTALVLQYSQPVMSCCRQVSSL*TESNGI
Trigger: AATGCCATTACTTTCAGTCCAAAGTGAAGAAACCTG...CCTGCAACAGGACATCACTGGTTGGGAATACTGTAGAACCAGAGCTGTGACCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
3UTR-3UTR GCA 90 bp GCTAGGCAGTTGCTAGCAATCTGGATGGCAAGGTTTTTCAAGAACTTTAGATTTGCAGACAAGGAAGGATaGAAAGACCACATGGAAAAT +
Preference number: 2 (lower is better)
Translates to: ARQLLAIWMARFFKNFRFADKEG*KDHMEN
Trigger: ATTTTCCATGTGGTCTTTGCATCCTTCCTTGTCTGC...AAATCTAAAGTTCTTGAAAAACCTTGCCATCCAGATTGCTAGCAACTGCCTAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
3UTR TCA 72 bp ACTGTGCATAGTTGGGCTACACTTATTCCCACAGACTaGCTCTCAAGGGCCCACACCTCACCTCTTCCTAGA +
Preference number: 3 (lower is better)
Translates to: TVHSWATLIPTD*LSRAHTSPLPR
Trigger: TCTAGGAAGAGGTGAGGTGTGGGCCCTTGAGAGTCAGTCTGTGGGAATAAGTGTAGCCCAACTATGCACAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
3UTR TCA 72 bp AGGTCACAGCTCTGGTTCTACAGTATTCCCAACCAGTaGTGTCCTGTTGCAGGTAGGCATGCTCCCTTGGAA +
Preference number: 3 (lower is better)
Translates to: RSQLWFYSIPNQ*CPVAGRHAPLE
Trigger: TTCCAAGGGAGCATGCCTACCTGCAACAGGACATCACTGGTTGGGAATACTGTAGAACCAGAGCTGTGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
3UTR CCA 72 bp ACAACACCTAGATGCCACCAACAAAGCGAAGCTGGATaGAACCTACTACCTCCTCCTCCCCTTAAGTTTTCC +
Preference number: 3 (lower is better)
Translates to: TTPRCHQQSEAG*NLLPPPPLKFS
Trigger: GGAAAACTTAAGGGGAGGAGGAGGTAGTAGGTTCCATCCAGCTTCGCTTTGTTGGTGGCATCTAGGTGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
3UTR GCA 72 bp TCACCTCTTCCTAGAATGTTAGGCAGATTTCCAACATaGAGACAAGGAAGGATGCAAAGACCACATGGAAAA +
Preference number: 3 (lower is better)
Translates to: SPLPRMLGRFPT*RQGRMQRPHGK
Trigger: TTTTCCATGTGGTCTTTGCATCCTTCCTTGTCTGCATGTTGGAAATCTGCCTAACATTCTAGGAAGAGGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
CDS-3UTR TCA 90 bp AGCCGAGGCCGGGACTCAGAGCGTGCTCAGCCGCCCGGGCCCGCACGTCCACGCACCATAGCAAGCAGCTaGAAGGCTGGGAAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: SRGRDSERAQPPGPARPRTIASS*KAGKQS
Trigger: GCTCTGCTTCCCAGCCTTTCAGCTGCTTGCTATGGT...GCGTGGACGTGCGGGCCCGGGCGGCTGAGCACGCTCTGAGTCCCGGCCTCGGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156921.2
CDS-3UTR GCA 90 bp AGGGCCCACACCTCACCTCTTCCTAGAATGTTAGGCAGATTTCCAACATGCAGACCTGGGTGCTTGCGGTaGTTACCGATGCGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: RAHTSPLPRMLGRFPTCRPGCLR*LPMRPW
Trigger: CCACGGCCGCATCGGTAAGCACCGCAAGCACCCAGG...TCTGCATGTTGGAAATCTGCCTAACATTCTAGGAAGAGGTGAGGTGTGGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
CDS-3UTR GCA 90 bp CAACAAAGCGAAGCTGGATGGAACCTACTACCTCCTCCTCCCCTTAAGTTTTCCTCCTGTGGTGGTGCATaGCTCCAGCATTCCCGCGGC +
Preference number: 4 (lower is better)
Translates to: QQSEAGWNLLPPPPLKFSSCGGA*LQHSRG
Trigger: GCCGCGGGAATGCTGGAGGCATGCACCACCACAGGA...GGAAAACTTAAGGGGAGGAGGAGGTAGTAGGTTCCATCCAGCTTCGCTTTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
CDS-3UTR TCA 90 bp AGATGCCACCAACAAAGCGAAGCTGGATGGAACCTACTACCTCCTCCTCCCCTTCCCGTGTCTGCTCGCTaGCCAATGTCCACAGTTTAT +
Preference number: 4 (lower is better)
Translates to: RCHQQSEAGWNLLPPPPLPVSAR*PMSTVY
Trigger: ATAAACTGTGGACATTGGTCAGCGAGCAGACACGGG...AAGGGGAGGAGGAGGTAGTAGGTTCCATCCAGCTTCGCTTTGTTGGTGGCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
CDS-3UTR GCA 90 bp TGTAGGAATTTACAACTGTGCATAGTTGGGCTACACTTATTCCCACAGACTGACGGCCGCCTGGGTGCTTaGGGTGCTTACCGATGCGGC +
Preference number: 4 (lower is better)
Translates to: CRNLQLCIVGLHLFPQTDGRLGA*GAYRCG
Trigger: GCCGCATCGGTAAGCACCGCAAGCACCCAGGCGGCC...GTCAGTCTGTGGGAATAAGTGTAGCCCAACTATGCACAGTTGTAAATTCCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
CDS-3UTR GCA 90 bp AGGGCCCACACCTCACCTCTTCCTAGAATGTTAGGCAGATTTCCAACATGCAGAGCATTGACCCGTGTCTaGTCGCTGACCAATGTCCAC +
Preference number: 4 (lower is better)
Translates to: RAHTSPLPRMLGRFPTCRALTRV*SLTNVH
Trigger: GTGGACATTGGTCAGCGAGCAGACACGGGTCAATGC...TCTGCATGTTGGAAATCTGCCTAACATTCTAGGAAGAGGTGAGGTGTGGGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143107.2
CDS TCA 72 bp CAGCCATGGAGACCCACTAGGACCATAGCAAGCAGCTaGAAGGCTGGGAAGCAGAGCCCCGACCCTCCGCGA +
Preference number: 6 (lower is better)
Translates to: QPWRPTRTIASS*KAGKQSPDPPR
Trigger: TCGCGGAGGGTCGGGGCTCTGCTTCCCAGCCTTTCAGCTGCTTGCTATGGTCCTAGTGGGTCTCCATGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156921.2