Pregenerated sensors for RPL23 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071415Ensembl transcript IDs: ENSMUST00000103146.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACTTTATTTTAGGGACCCAAAACCCAAAGATAATTTACCATATGTaGATGGTTTGCTCTAATATTTATCTGTGTTATGTGTACCTGGTC | + |
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Preference number: 1 (lower is better) Translates to: HFILGTQNPKIIYHM*MVCSNIYLCYVYLV Trigger: GACCAGGTACACATAACACAGATAAATATTAGAGCAAACCATGCACATATGGTAAATTATCTTTGGGTTTTGGGTCCCTAAAATAAAGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| 3UTR-3UTR TCA 90 bp | ACACCACTTTATTTTAGGGACCCAAAACCCAAAGATAATTTACCATATGTGCATAGTTCTGCAAGGTCATaGAGGTCATGCCCTGAACTG | + |
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Preference number: 2 (lower is better) Translates to: TPLYFRDPKPKDNLPYVHSSARS*RSCPEL Trigger: CAGTTCAGGGCATGACCTTCATGACCTTGCAGAACT...ATGCACATATGGTAAATTATCTTTGGGTTTTGGGTCCCTAAAATAAAGTGGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| 3UTR-3UTR TCA 90 bp | CACCACTTTATTTTAGGGACCCAAAACCCAAAGATAATTTACCATATGTGCATGGTCCCAGCAAAGACCTaGAAAGAATGCGTGTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: HHFILGTQNPKIIYHMCMVPAKT*KECVFC Trigger: ACAAAACACGCATTCTTTTCAGGTCTTTGCTGGGAC...CATGCACATATGGTAAATTATCTTTGGGTTTTGGGTCCCTAAAATAAAGTGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| 3UTR-3UTR CCA 90 bp | TTTACCATATGTGCATGGTTTGCTCTAATATTTATCTGTGTTATGTGTACCTGGTTCTCTGTGTATTCCTaGCTGTCCTGGAACTCACTC | + |
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Preference number: 2 (lower is better) Translates to: FTICAWFALIFICVMCTWFSVYS*LSWNSL Trigger: GAGTGAGTTCCAGGACAGCCAGGAATACACAGAGAA...CCAGGTACACATAACACAGATAAATATTAGAGCAAACCATGCACATATGGTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| 3UTR-3UTR CAA 90 bp | CACCACTTTATTTTAGGGACCCAAAACCCAAAGATAATTTACCATATGTGCATGTCTGCAAAGCTGATATaGGAAAAGGTGTCAAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: HHFILGTQNPKIIYHMCMSAKLI*EKVSRR Trigger: TCTTCTTGACACCTTTTCCAATATCAGCTTTGCAGA...CATGCACATATGGTAAATTATCTTTGGGTTTTGGGTCCCTAAAATAAAGTGGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| CDS-3UTR TCA 90 bp | TGCAAAGCTGATATTGGAAAAGGTGTCAAGAAGACCAGCTCTCAGAGCAGAGACTGTTGTCTGCACAGTTaGTCACAGCTCCGACCGGAA | + |
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Preference number: 4 (lower is better) Translates to: CKADIGKGVKKTSSQSRDCCLHS*SQLRPE Trigger: TTCCGGTCGGAGCTGTGATCAACTGTGCAGACAACA...GTCTCTGCTCTGAGAGCTGGTCTTCTTGACACCTTTTCCAATATCAGCTTTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| CDS-3UTR GCA 90 bp | TTTACCATATGTGCATGGTTTGCTCTAATATTTATCTGTGTTATGTGTACCTGGGCTGCCTGCGTTGGATaGAATTCTGGGCCACAAGTC | + |
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Preference number: 4 (lower is better) Translates to: FTICAWFALIFICVMCTWAACVG*NSGPQV Trigger: GACTTGTGGCCCAGAATTGCATCCAACGCAGGCAGC...CCAGGTACACATAACACAGATAAATATTAGAGCAAACCATGCACATATGGTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| CDS-3UTR TCA 90 bp | TGCAAAGCTGATATTGGAAAAGGTGTCAAGAAGACCAGCTCTCAGAGCAGAGACCTTTATTGTTTACTATaGCCCCTGCGTTATCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: CKADIGKGVKKTSSQSRDLYCLL*PLRYLQ Trigger: TTGAAGATAACGCAGGGGTCATAGTAAACAATAAAG...GTCTCTGCTCTGAGAGCTGGTCTTCTTGACACCTTTTCCAATATCAGCTTTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| CDS-3UTR GCA 90 bp | GGTGTCAAGAAGACCAGCTCTCAGAGCAGAGACTTTAATGAATATATTTTACAATCATGCAATGCTGCCTaGGTTGGATGCAATTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GVKKTSSQSRDFNEYILQSCNAA*VGCNSG Trigger: CCCAGAATTGCATCCAACGCAGGCAGCATTGCATGA...TTGTAAAATATATTCATTAAAGTCTCTGCTCTGAGAGCTGGTCTTCTTGACACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| CDS-3UTR CAA 90 bp | TGCAAAGCTGATATTGGAAAAGGTGTCAAGAAGACCAGCTCTCAGAGCAGAGACGCAATGCTGCCTGCGTaGGATGCAATTCTGGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: CKADIGKGVKKTSSQSRDAMLPA*DAILGH Trigger: GTGGCCCAGAATTGCATCCAACGCAGGCAGCATTGC...GTCTCTGCTCTGAGAGCTGGTCTTCTTGACACCTTTTCCAATATCAGCTTTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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| CDS-3UTR CAA 90 bp | GGTGTCAAGAAGACCAGCTCTCAGAGCAGAGACTTTAATGAATATATTTTACAATTCCTTAGTTCTGGTTaGCCTTTCTTAACTGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: GVKKTSSQSRDFNEYILQFLSSG*PFLTVA Trigger: GGCCACAGTTAAGAAAGGCAAACCAGAACTAAGGAA...TTGTAAAATATATTCATTAAAGTCTCTGCTCTGAGAGCTGGTCTTCTTGACACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103146.5 |
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