RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPL22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028936

Ensembl transcript IDs: ENSMUST00000139685.8, ENSMUST00000188151.2

Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCTGTAAGCCTCCTGAGCCCTGGGCTTGGAGGGGCTCCACCTACTaGGAACATCTGGAAGCTGTCTCCCTCGCCCTCTGCTGGAGGCTA +
Preference number: 1 (lower is better)
Translates to: PCKPPEPWAWRGSTY*EHLEAVSLALCWRL
Trigger: TAGCCTCCAGCAGAGGGCGAGGGAGACAGCTTCCAGATGTTCCCAGTAGGTGGAGCCCCTCCAAGCCCAGGGCTCAGGAGGCTTACAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR GCA 90 bp AAGACTCGGGCTGGCCGGAGCCCACCACCCAGCCTCTCGTCTACTTaGTCTGTCAGATGCAGCCCCCTAGCCTGGTTCTTCTGTTTGGCC +
Preference number: 1 (lower is better)
Translates to: KTRAGRSPPPSLSST*SVRCSPLAWFFCLA
Trigger: GGCCAAACAGAAGAACCAGGCTAGGGGGCTGCATCTGACAGAGCAAGTAGACGAGAGGCTGGGTGGTGGGCTCCGGCCAGCCCGAGTCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR GCA 90 bp GTGTTTCCTCGGAGGCGCAGCAGCAGAACTTGTGGCCACCTGATGTaGAGGCCTCCAGTGTGGCCACCGGCTGTAAGCGAGCCCTTTAGC +
Preference number: 1 (lower is better)
Translates to: VFPRRRSSRTCGHLM*RPPVWPPAVSEPFS
Trigger: GCTAAAGGGCTCGCTTACAGCCGGTGGCCACACTGGAGGCCTGCACATCAGGTGGCCACAAGTTCTGCTGCTGCGCCTCCGAGGAAACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 90 bp ATCGGAGGACCAAGTGTTTCCTCGGAGGCGCAGCAGCAGAACTTGTaGCCACCTGATGTGCAGGCCTCCAGTGTGGCCACCGGCTGTAAG +
Preference number: 1 (lower is better)
Translates to: IGGPSVSSEAQQQNL*PPDVQASSVATGCK
Trigger: CTTACAGCCGGTGGCCACACTGGAGGCCTGCACATCAGGTGGCCACAAGTTCTGCTGCTGCGCCTCCGAGGAAACACTTGGTCCTCCGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 90 bp ACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTaGAGTTCCCACCCTGTAAGCCTCCTGAGCCCTGGGCTTGGAGGG +
Preference number: 1 (lower is better)
Translates to: TSLSSHQTPSSLHQY*SSHPVSLLSPGLGG
Trigger: CCCTCCAAGCCCAGGGCTCAGGAGGCTTACAGGGTGGGAACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 90 bp TCTCCGGGCACACACAATGGCAAGGGAACCCCATGCCCAGTGCCCTaGAGGTACACACAGCTTGGACTCATTTCTGCAGTGATGGAGATT +
Preference number: 1 (lower is better)
Translates to: SPGTHNGKGTPCPVP*RYTQLGLISAVMEI
Trigger: AATCTCCATCACTGCAGAAATGAGTCCAAGCTGTGTGTACCTCCAGGGCACTGGGCATGGGGTTCCCTTGCCATTGTGTGTGCCCGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CAA 90 bp TCGATCGGAGGACCAAGTGTTTCCTCGGAGGCGCAGCAGCAGAACTaGTGGCCACCTGATGTGCAGGCCTCCAGTGTGGCCACCGGCTGT +
Preference number: 2 (lower is better)
Translates to: SIGGPSVSSEAQQQN*WPPDVQASSVATGC
Trigger: ACAGCCGGTGGCCACACTGGAGGCCTGCACATCAGGTGGCCACAAGTTCTGCTGCTGCGCCTCCGAGGAAACACTTGGTCCTCCGATCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR GCA 90 bp CTGAAGTTGGAAGGAAACGCTAGCGCCTCCTCCCAGGGCAGAGGAGAAAGACAGGAACCCCATGCCCAGTaGCCTGGAGGTACACACAGC +
Preference number: 2 (lower is better)
Translates to: LKLEGNASASSQGRGERQEPHAQ*PGGTHS
Trigger: GCTGTGTGTACCTCCAGGGCACTGGGCATGGGGTTC...CTGTCTTTCTCCTCTGCCCTGGGAGGAGGCGCTAGCGTTTCCTTCCAACTTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR GCA 90 bp CTGAAGTTGGAAGGAAACGCTAGCGCCTCCTCCCAGGGCAGAGGAGAAAGACAGTGTGGCCACCTGATGTaGAGGCCTCCAGTGTGGCCA +
Preference number: 2 (lower is better)
Translates to: LKLEGNASASSQGRGERQCGHLM*RPPVWP
Trigger: TGGCCACACTGGAGGCCTGCACATCAGGTGGCCACA...CTGTCTTTCTCCTCTGCCCTGGGAGGAGGCGCTAGCGTTTCCTTCCAACTTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CAA 90 bp AACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATaGGAGTTCCCACCCTGTAAGCCTCCTGAGCCCTGGGCTTGGAGG +
Preference number: 2 (lower is better)
Translates to: NFPIFPSNALLPPPV*EFPPCKPPEPWAWR
Trigger: CCTCCAAGCCCAGGGCTCAGGAGGCTTACAGGGTGGGAACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR GCA 90 bp ACCACCAGCTCTAAGACTCGGGCTGGCCGGAGCCCACCACCCAGCCTCTCGTCTCTTCTGTTTGGCCATTaGTACTGGAGAACTCAAGTT +
Preference number: 2 (lower is better)
Translates to: TTSSKTRAGRSPPPSLSSLLFGH*YWRTQV
Trigger: AACTTGAGTTCTCCAGTAGCAATGGCCAAACAGAAG...AGACGAGAGGCTGGGTGGTGGGCTCCGGCCAGCCCGAGTCTTAGAGCTGGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CCA 90 bp ACCACCAGCTCTAAGACTCGGGCTGGCCGGAGCCCACCACCCAGCCTCTCGTCTTTTGGCCATTGCTACTaGAGAACTCAAGTTTCTGAG +
Preference number: 2 (lower is better)
Translates to: TTSSKTRAGRSPPPSLSSFGHCY*RTQVSE
Trigger: CTCAGAAACTTGAGTTCTCCAGTAGCAATGGCCAAA...AGACGAGAGGCTGGGTGGTGGGCTCCGGCCAGCCCGAGTCTTAGAGCTGGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CCA 90 bp CTCCTCCCTCCACCAGTATTGGAGTTCCCACCCTGTAAGCCTCCTGAGCCCTGGCCTGGTTCTTCTGTTTaGCCATTGCTACTGGAGAAC +
Preference number: 2 (lower is better)
Translates to: LLPPPVLEFPPCKPPEPWPGSSV*PLLLEN
Trigger: GTTCTCCAGTAGCAATGGCCAAACAGAAGAACCAGG...CCAGGGCTCAGGAGGCTTACAGGGTGGGAACTCCAATACTGGTGGAGGGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR GCA 90 bp CTGAAGTTGGAAGGAAACGCTAGCGCCTCCTCCCAGGGCAGAGGAGAAAGACAGAAACACTGGAGCCTTTaGCACAGGGGGATTGCAAAG +
Preference number: 2 (lower is better)
Translates to: LKLEGNASASSQGRGERQKHWSL*HRGIAK
Trigger: CTTTGCAATCCCCCTGTGGCAAAGGCTCCAGTGTTT...CTGTCTTTCTCCTCTGCCCTGGGAGGAGGCGCTAGCGTTTCCTTCCAACTTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CCA 90 bp CTCCTCCCTCCACCAGTATTGGAGTTCCCACCCTGTAAGCCTCCTGAGCCCTGGACTAGTGCTCAGACCTaGACACAAAAGTCCCTGAAA +
Preference number: 2 (lower is better)
Translates to: LLPPPVLEFPPCKPPEPWTSAQT*TQKSLK
Trigger: TTTCAGGGACTTTTGTGTCCAGGTCTGAGCACTAGT...CCAGGGCTCAGGAGGCTTACAGGGTGGGAACTCCAATACTGGTGGAGGGAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CCA 90 bp CTGAAGTTGGAAGGAAACGCTAGCGCCTCCTCCCAGGGCAGAGGAGAAAGACAGAGAAATAGAAAACACTaGAGCCTTTGCCACAGGGGG +
Preference number: 2 (lower is better)
Translates to: LKLEGNASASSQGRGERQRNRKH*SLCHRG
Trigger: CCCCCTGTGGCAAAGGCTCCAGTGTTTTCTATTTCT...CTGTCTTTCTCCTCTGCCCTGGGAGGAGGCGCTAGCGTTTCCTTCCAACTTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR TCA 90 bp GGACTCATTTCTGCAGTGATGGAGATTAAACCTGGAGCACACCAGGCTAGCATTCAGAACATGCAGCAGTaGGACTCAAAGACCCCTGCC +
Preference number: 2 (lower is better)
Translates to: GLISAVMEIKPGAHQASIQNMQQ*DSKTPA
Trigger: GGCAGGGGTCTTTGAGTCTCACTGCTGCATGTTCTG...AATGCTAGCCTGGTGTGCTCCAGGTTTAATCTCCATCACTGCAGAAATGAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR GCA 90 bp CTGAAGTTGGAAGGAAACGCTAGCGCCTCCTCCCAGGGCAGAGGAGAAAGACAGCTTCTGTTTGGCCATTaGTACTGGAGAACTCAAGTT +
Preference number: 2 (lower is better)
Translates to: LKLEGNASASSQGRGERQLLFGH*YWRTQV
Trigger: AACTTGAGTTCTCCAGTAGCAATGGCCAAACAGAAG...CTGTCTTTCTCCTCTGCCCTGGGAGGAGGCGCTAGCGTTTCCTTCCAACTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR TCA 90 bp CAACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTGGAGTTGCCATGGGCTTTGTTTaGGTTGTCTATAAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: QLPYLPIKRPPPSTSIGVAMGFV*VVYKPL
Trigger: CAAGGGCTTATAGACAACTCAAACAAAGCCCATGGC...AACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR TCA 90 bp GGACTCATTTCTGCAGTGATGGAGATTAAACCTGGAGCACACCAGGCTAGCATTTCTATAAGCCCTTGTTaGCCTCTATCTCAGACACCC +
Preference number: 2 (lower is better)
Translates to: GLISAVMEIKPGAHQASISISPC*PLSQTP
Trigger: GGGTGTCTGAGATAGAGGTCAACAAGGGCTTATAGA...AATGCTAGCCTGGTGTGCTCCAGGTTTAATCTCCATCACTGCAGAAATGAGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR TCA 90 bp GGACTCATTTCTGCAGTGATGGAGATTAAACCTGGAGCACACCAGGCTAGCATTGCCATGGGCTTTGTTTaGGTTGTCTATAAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: GLISAVMEIKPGAHQASIAMGFV*VVYKPL
Trigger: CAAGGGCTTATAGACAACTCAAACAAAGCCCATGGC...AATGCTAGCCTGGTGTGCTCCAGGTTTAATCTCCATCACTGCAGAAATGAGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CCA 90 bp CAACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTGGAGTTTTTGGCCATTGCTACTaGAGAACTCAAGTTTCTGAG +
Preference number: 2 (lower is better)
Translates to: QLPYLPIKRPPPSTSIGVFGHCY*RTQVSE
Trigger: CTCAGAAACTTGAGTTCTCCAGTAGCAATGGCCAAA...AACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CCA 90 bp GGACTCATTTCTGCAGTGATGGAGATTAAACCTGGAGCACACCAGGCTAGCATTGACTTGCTCAAGCCATaGGCTTTGTTTGAGTTGTCT +
Preference number: 2 (lower is better)
Translates to: GLISAVMEIKPGAHQASIDLLKP*ALFELS
Trigger: AGACAACTCAAACAAAGCCCATGGCTTGAGCAAGTC...AATGCTAGCCTGGTGTGCTCCAGGTTTAATCTCCATCACTGCAGAAATGAGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CCA 90 bp AAGACCCCTGCCATTTCAATAGGAAGGAAGAAGGTTAGTACACACAACTGTGAGACTAGTGCTCAGACCTaGACACAAAAGTCCCTGAAA +
Preference number: 2 (lower is better)
Translates to: KTPAISIGRKKVSTHNCETSAQT*TQKSLK
Trigger: TTTCAGGGACTTTTGTGTCCAGGTCTGAGCACTAGT...CTCACAGTTGTGTGTACTAACCTTCTTCCTTCCTATTGAAATGGCAGGGGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR GCA 72 bp GCTGGCCGGAGCCCACCACCCAGCCTCTCGTCTACTTaGTCTGTCAGATGCAGCCCCCTAGCCTGGTTCTTC +
Preference number: 3 (lower is better)
Translates to: AGRSPPPSLSST*SVRCSPLAWFF
Trigger: GAAGAACCAGGCTAGGGGGCTGCATCTGACAGAGCAAGTAGACGAGAGGCTGGGTGGTGGGCTCCGGCCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 72 bp CCAAGTGTTTCCTCGGAGGCGCAGCAGCAGAACTTGTaGCCACCTGATGTGCAGGCCTCCAGTGTGGCCACC +
Preference number: 3 (lower is better)
Translates to: PSVSSEAQQQNL*PPDVQASSVAT
Trigger: GGTGGCCACACTGGAGGCCTGCACATCAGGTGGCCACAAGTTCTGCTGCTGCGCCTCCGAGGAAACACTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR GCA 72 bp AGTTCTCCGGGCACACACAATGGCAAGGGAACCCCATaGCCAGTGCCCTGGAGGTACACACAGCTTGGACTC +
Preference number: 3 (lower is better)
Translates to: SSPGTHNGKGTP*PVPWRYTQLGL
Trigger: GAGTCCAAGCTGTGTGTACCTCCAGGGCACTGGGCATGGGGTTCCCTTGCCATTGTGTGTGCCCGGAGAACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 72 bp GTATTGGAGTTCCCACCCTGTAAGCCTCCTGAGCCCTaGGCTTGGAGGGGCTCCACCTACTGGGAACATCTG +
Preference number: 3 (lower is better)
Translates to: VLEFPPCKPPEP*AWRGSTYWEHL
Trigger: CAGATGTTCCCAGTAGGTGGAGCCCCTCCAAGCCCAGGGCTCAGGAGGCTTACAGGGTGGGAACTCCAATAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CAA 90 bp ACCACCAGCTCTAAGACTCGGGCTGGCCGGAGCCCACCACCCAGCCTCTCGTCTTCTTCTGTTTGGCCATaGCTACTGGAGAACTCAAGT +
Preference number: 3 (lower is better)
Translates to: TTSSKTRAGRSPPPSLSSSSVWP*LLENSS
Trigger: ACTTGAGTTCTCCAGTAGCAATGGCCAAACAGAAGA...AGACGAGAGGCTGGGTGGTGGGCTCCGGCCAGCCCGAGTCTTAGAGCTGGTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 72 bp AGAACTTGTGGCCACCTGATGTGCAGGCCTCCAGTGTaGCCACCGGCTGTAAGCGAGCCCTTTAGCATTGCA +
Preference number: 3 (lower is better)
Translates to: RTCGHLMCRPPV*PPAVSEPFSIA
Trigger: TGCAATGCTAAAGGGCTCGCTTACAGCCGGTGGCCACACTGGAGGCCTGCACATCAGGTGGCCACAAGTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 72 bp ACACACAATGGCAAGGGAACCCCATGCCCAGTGCCCTaGAGGTACACACAGCTTGGACTCATTTCTGCAGTG +
Preference number: 3 (lower is better)
Translates to: THNGKGTPCPVP*RYTQLGLISAV
Trigger: CACTGCAGAAATGAGTCCAAGCTGTGTGTACCTCCAGGGCACTGGGCATGGGGTTCCCTTGCCATTGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CAA 90 bp CTGAAGTTGGAAGGAAACGCTAGCGCCTCCTCCCAGGGCAGAGGAGAAAGACAGTTTGCCACAGGGGGATaGCAAAGCCTCAACAGGTTA +
Preference number: 3 (lower is better)
Translates to: LKLEGNASASSQGRGERQFATGG*QSLNRL
Trigger: TAACCTGTTGAGGCTTTGCAATCCCCCTGTGGCAAA...CTGTCTTTCTCCTCTGCCCTGGGAGGAGGCGCTAGCGTTTCCTTCCAACTTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 72 bp TCGTCTACTTGCTCTGTCAGATGCAGCCCCCTAGCCTaGTTCTTCTGTTTGGCCATTGCTACTGGAGAACTC +
Preference number: 3 (lower is better)
Translates to: SSTCSVRCSPLA*FFCLAIATGEL
Trigger: GAGTTCTCCAGTAGCAATGGCCAAACAGAAGAACCAGGCTAGGGGGCTGCATCTGACAGAGCAAGTAGACGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CAA 90 bp GCAACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTGGAGTCTCAAGCCATGGGCTTaGTTTGAGTTGTCTATAAGC +
Preference number: 3 (lower is better)
Translates to: ATSLSSHQTPSSLHQYWSLKPWA*FELSIS
Trigger: GCTTATAGACAACTCAAACAAAGCCCATGGCTTGAG...ACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CAA 90 bp CAACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTGGAGTTTCTTCTGTTTGGCCATaGCTACTGGAGAACTCAAGT +
Preference number: 3 (lower is better)
Translates to: QLPYLPIKRPPPSTSIGVSSVWP*LLENSS
Trigger: ACTTGAGTTCTCCAGTAGCAATGGCCAAACAGAAGA...AACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR-3UTR CAA 90 bp CAACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTGGAGTTCTCAAGCCATGGGCTTaGTTTGAGTTGTCTATAAGC +
Preference number: 3 (lower is better)
Translates to: QLPYLPIKRPPPSTSIGVLKPWA*FELSIS
Trigger: GCTTATAGACAACTCAAACAAAGCCCATGGCTTGAG...AACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR TCA 72 bp CCATGGGCTTTGTTTGAGTTGTCTATAAGCCCTTGTTaGCCTCTATCTCAGACACCCTATAGAGAGCCCCCT +
Preference number: 3 (lower is better)
Translates to: PWALFELSISPC*PLSQTPYREPP
Trigger: AGGGGGCTCTCTATAGGGTGTCTGAGATAGAGGTCAACAAGGGCTTATAGACAACTCAAACAAAGCCCATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR GCA 72 bp ATGCAGCCCCCTAGCCTGGTTCTTCTGTTTGGCCATTaGTACTGGAGAACTCAAGTTTCTGAGCAGGAAAAA +
Preference number: 3 (lower is better)
Translates to: MQPPSLVLLFGH*YWRTQVSEQEK
Trigger: TTTTTCCTGCTCAGAAACTTGAGTTCTCCAGTAGCAATGGCCAAACAGAAGAACCAGGCTAGGGGGCTGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR TCA 72 bp TTATTAGAGAGCAAGCAGATGCCTCTGCATAGGTTTTaGCAACAGGAGCACCCTACAGTGTTGGGACCTCTT +
Preference number: 3 (lower is better)
Translates to: LLESKQMPLHRF*QQEHPTVLGPL
Trigger: AAGAGGTCCCAACACTGTAGGGTGCTCCTGTTGTCAAAACCTATGCAGAGGCATCTGCTTGCTCTCTAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR TCA 72 bp GCTTGTTGCAGACTTGCTCAAGCCATGGGCTTTGTTTaGGTTGTCTATAAGCCCTTGTTGACCTCTATCTCA +
Preference number: 3 (lower is better)
Translates to: ACCRLAQAMGFV*VVYKPLLTSIS
Trigger: TGAGATAGAGGTCAACAAGGGCTTATAGACAACTCAAACAAAGCCCATGGCTTGAGCAAGTCTGCAACAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CCA 72 bp CCAGCAAGTTTCCATTTTATTACAAGTCGCAGAATCTaGGACCATCTTTTAGAAGCATATGCTAATCAACCC +
Preference number: 3 (lower is better)
Translates to: PASFHFITSRRI*DHLLEAYANQP
Trigger: GGGTTGATTAGCATATGCTTCTAAAAGATGGTCCCAGATTCTGCGACTTGTAATAAAATGGAAACTTGCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CAA 72 bp GGCTGGCCGGAGCCCACCACCCAGCCTCTCGTCTACTaGCTCTGTCAGATGCAGCCCCCTAGCCTGGTTCTT +
Preference number: 4 (lower is better)
Translates to: GWPEPTTQPLVY*LCQMQPPSLVL
Trigger: AAGAACCAGGCTAGGGGGCTGCATCTGACAGAGCAAGTAGACGAGAGGCTGGGTGGTGGGCTCCGGCCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CAA 72 bp GGACCAAGTGTTTCCTCGGAGGCGCAGCAGCAGAACTaGTGGCCACCTGATGTGCAGGCCTCCAGTGTGGCC +
Preference number: 4 (lower is better)
Translates to: GPSVSSEAQQQN*WPPDVQASSVA
Trigger: GGCCACACTGGAGGCCTGCACATCAGGTGGCCACAAGTTCTGCTGCTGCGCCTCCGAGGAAACACTTGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
3UTR CAA 72 bp TCTGTCAGATGCAGCCCCCTAGCCTGGTTCTTCTGTTaGGCCATTGCTACTGGAGAACTCAAGTTTCTGAGC +
Preference number: 4 (lower is better)
Translates to: SVRCSPLAWFFC*AIATGELKFLS
Trigger: GCTCAGAAACTTGAGTTCTCCAGTAGCAATGGCCAAACAGAAGAACCAGGCTAGGGGGCTGCATCTGACAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
CDS-3UTR TCA 90 bp CAACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTGGAGTTCTTTCCCATTCACCTTaGTTCTCTCCTGGAGGAACT +
Preference number: 4 (lower is better)
Translates to: QLPYLPIKRPPPSTSIGVLSHSP*FSPGGT
Trigger: AGTTCCTCCAGGAGAGAATCAAGGTGAATGGGAAAG...AACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
CDS-3UTR CCA 90 bp GCAACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTGGAGTACCTTGATTCTCTCCTaGAGGAACTGCTCAAAATTG +
Preference number: 4 (lower is better)
Translates to: ATSLSSHQTPSSLHQYWSTLILS*RNCSKL
Trigger: CAATTTTGAGCAGTTCCTCCAGGAGAGAATCAAGGT...ACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
CDS-3UTR TCA 90 bp GGACTCATTTCTGCAGTGATGGAGATTAAACCTGGAGCACACCAGGCTAGCATTCTTTCCCATTCACCTTaGTTCTCTCCTGGAGGAACT +
Preference number: 4 (lower is better)
Translates to: GLISAVMEIKPGAHQASILSHSP*FSPGGT
Trigger: AGTTCCTCCAGGAGAGAATCAAGGTGAATGGGAAAG...AATGCTAGCCTGGTGTGCTCCAGGTTTAATCTCCATCACTGCAGAAATGAGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
CDS-3UTR CAA 90 bp ACCACCAGCTCTAAGACTCGGGCTGGCCGGAGCCCACCACCCAGCCTCTCGTCTGAAGTGACAGTGATCTaGCTCTTGCTGCGTTCGATG +
Preference number: 5 (lower is better)
Translates to: TTSSKTRAGRSPPPSLSSEVTVI*LLLRSM
Trigger: CATCGAACGCAGCAAGAGCAAGATCACTGTCACTTC...AGACGAGAGGCTGGGTGGTGGGCTCCGGCCAGCCCGAGTCTTAGAGCTGGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2
CDS-3UTR CAA 90 bp GCAACTTCCCTATCTTCCCATCAAACGCCCTCCTCCCTCCACCAGTATTGGAGTGAAGTGACAGTGATCTaGCTCTTGCTGCGTTCGATG +
Preference number: 5 (lower is better)
Translates to: ATSLSSHQTPSSLHQYWSEVTVI*LLLRSM
Trigger: CATCGAACGCAGCAAGAGCAAGATCACTGTCACTTC...ACTCCAATACTGGTGGAGGGAGGAGGGCGTTTGATGGGAAGATAGGGAAGTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139685.8
ENSMUST00000188151.2