Pregenerated sensors for RPL21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041453Ensembl transcript IDs: ENSMUST00000035983.12
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCCACTCCCTAATACCAGCATGCTACTATGCACATCATGCAGCCTaGAGATCCCCCTGCCTCGGACTCCTGGTGCTAGGAGTTAGAGCT | + |
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Preference number: 1 (lower is better) Translates to: THSLIPACYYAHHAA*RSPCLGLLVLGVRA Trigger: AGCTCTAACTCCTAGCACCAGGAGTCCGAGGCAGGGGGATCTTCAGGCTGCATGATGTGCATAGTAGCATGCTGGTATTAGGGAGTGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR GCA 90 bp | CACAGATACCCACTCCCTAATACCAGCATGCTACTATGCACATCATaGAGCCTGAAGATCCCCCTGCCTCGGACTCCTGGTGCTAGGAGT | + |
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Preference number: 1 (lower is better) Translates to: HRYPLPNTSMLLCTS*SLKIPLPRTPGARS Trigger: ACTCCTAGCACCAGGAGTCCGAGGCAGGGGGATCTTCAGGCTGCATGATGTGCATAGTAGCATGCTGGTATTAGGGAGTGGGTATCTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR CCA 90 bp | AGGAAAACAATCAGTGCTTTCTCAGCAAGCAGTACCAAATGTCTGTaGCCAGCCCTCTCCTGGCTTAGGTCTGCCCACTTTGGAGAATTT | + |
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Preference number: 1 (lower is better) Translates to: RKTISAFSASSTKCL*PALSWLRSAHFGEF Trigger: AAATTCTCCAAAGTGGGCAGACCTAAGCCAGGAGAGGGCTGGCCACAGACATTTGGTACTGCTTGCTGAGAAAGCACTGATTGTTTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR GCA 90 bp | GTAAATTTCTGTATAGCTGCCACAGCAAGCAAGAATATAGTTATTTaGTTGTCACTGCCGACTCCAACCCTGGGCTACAACCTAAGCACT | + |
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Preference number: 1 (lower is better) Translates to: VNFCIAATASKNIVI*LSLPTPTLGYNLST Trigger: AGTGCTTAGGTTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTTGCTGTGGCAGCTATACAGAAATTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAGAATATAGTTATTTGCTTGTCACTGCCGACTCCAACCCTGGGCTACAAGCACATCATGCAGCCTaGAGATCCCCCTGCCTCGGA | + |
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Preference number: 2 (lower is better) Translates to: KQEYSYLLVTADSNPGLQAHHAA*RSPCLG Trigger: TCCGAGGCAGGGGGATCTTCAGGCTGCATGATGTGC...TTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR CAA 90 bp | CCAAATGTCTGTGGCCAGCCCTCTCCTGGCTTAGGTCTGCCCACTTaGGAGAATTTTGGTTATTTTCAAAGTGGGAACCACAGATACCCA | + |
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Preference number: 2 (lower is better) Translates to: PNVCGQPSPGLGLPT*ENFGYFQSGNHRYP Trigger: TGGGTATCTGTGGTTCCCACTTTGAAAATAACCAAAATTCTCCAAAGTGGGCAGACCTAAGCCAGGAGAGGGCTGGCCACAGACATTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR CCA 90 bp | CAAGCAGTACCAAATGTCTGTGGCCAGCCCTCTCCTGGCTTAGGTCTGCCCACTTCACAGTCCTGGTGCTaGTATTTTATTTCTTTGTGT | + |
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Preference number: 2 (lower is better) Translates to: QAVPNVCGQPSPGLGLPTSQSWC*YFISLC Trigger: ACACAAAGAAATAAAATACCAGCACCAGGACTGTGA...AGTGGGCAGACCTAAGCCAGGAGAGGGCTGGCCACAGACATTTGGTACTGCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR CAA 90 bp | AATTTCTGTATAGCTGCCACAGCAAGCAAGAATATAGTTATTTGCTaGTCACTGCCGACTCCAACCCTGGGCTACAACCTAAGCACTGCC | + |
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Preference number: 2 (lower is better) Translates to: NFCIAATASKNIVIC*SLPTPTLGYNLSTA Trigger: GGCAGTGCTTAGGTTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTTGCTGTGGCAGCTATACAGAAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR CAA 90 bp | CGTAAATTTCTGTATAGCTGCCACAGCAAGCAAGAATATAGTTATTaGCTTGTCACTGCCGACTCCAACCCTGGGCTACAACCTAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: RKFLYSCHSKQEYSY*LVTADSNPGLQPKH Trigger: GTGCTTAGGTTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTTGCTGTGGCAGCTATACAGAAATTTACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAGAATATAGTTATTTGCTTGTCACTGCCGACTCCAACCCTGGGCTACAACAAAGACAAGAAAGGTaGACCAAAGGCCAGTACACA | + |
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Preference number: 2 (lower is better) Translates to: KQEYSYLLVTADSNPGLQQRQER*TKGQYT Trigger: TGTGTACTGGCCTTTGGTTCACCTTTCTTGTCTTTG...TTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR CCA 90 bp | AAGCAATCTCTTTCACTAAGACAGGTAGTACTTCTAGAGAACCCTCTTACCTATAGTACCAAATGTCTGTaGCCAGCCCTCTCCTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: KQSLSLRQVVLLENPLTYSTKCL*PALSWL Trigger: AAGCCAGGAGAGGGCTGGCCACAGACATTTGGTACT...ATAGGTAAGAGGGTTCTCTAGAAGTACTACCTGTCTTAGTGAAAGAGATTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR GCA 90 bp | AAGCAATCTCTTTCACTAAGACAGGTAGTACTTCTAGAGAACCCTCTTACCTATACCAGCATGCTACTATaGACATCATGCAGCCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: KQSLSLRQVVLLENPLTYTSMLL*TSCSLK Trigger: CTTCAGGCTGCATGATGTGCATAGTAGCATGCTGGT...ATAGGTAAGAGGGTTCTCTAGAAGTACTACCTGTCTTAGTGAAAGAGATTGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR GCA 90 bp | AAGCAAGAATATAGTTATTTGCTTGTCACTGCCGACTCCAACCCTGGGCTACAACAAGAGGATATTTTCTaGACACTAAGCTGTATCATT | + |
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Preference number: 2 (lower is better) Translates to: KQEYSYLLVTADSNPGLQQEDIF*TLSCII Trigger: AATGATACAGCTTAGTGTGCAGAAAATATCCTCTTG...TTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR CCA 90 bp | CCCACTTTGGAGAATTTTGGTTATTTTCAAAGTGGGAACCACAGATACCCACTCAACACTTCACAGTCCTaGTGCTGGTATTTTATTTCT | + |
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Preference number: 2 (lower is better) Translates to: PTLENFGYFQSGNHRYPLNTSQS*CWYFIS Trigger: AGAAATAAAATACCAGCACCAGGACTGTGAAGTGTT...GAGTGGGTATCTGTGGTTCCCACTTTGAAAATAACCAAAATTCTCCAAAGTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR CCA 90 bp | AAGCAAGAATATAGTTATTTGCTTGTCACTGCCGACTCCAACCCTGGGCTACAAACATTGTTTCAAAGATaGTATGGTGGGCCATATATA | + |
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Preference number: 2 (lower is better) Translates to: KQEYSYLLVTADSNPGLQTLFQR*YGGPYI Trigger: TATATATGGCCCACCATACCATCTTTGAAACAATGT...TTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR-3UTR GCA 90 bp | TTTAGGTTAGGAAAACAATCAGTGCTTTCTCAGCAAGCAGTACCAAATGTCTGTACTTCACAGTCCTGGTaGTGGTATTTTATTTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: FRLGKQSVLSQQAVPNVCTSQSW*WYFISL Trigger: CAAAGAAATAAAATACCAGCACCAGGACTGTGAAGT...ACAGACATTTGGTACTGCTTGCTGAGAAAGCACTGATTGTTTTCCTAACCTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR GCA 72 bp | CCACTCCCTAATACCAGCATGCTACTATGCACATCATaGAGCCTGAAGATCCCCCTGCCTCGGACTCCTGGT | + |
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Preference number: 3 (lower is better) Translates to: PLPNTSMLLCTS*SLKIPLPRTPG Trigger: ACCAGGAGTCCGAGGCAGGGGGATCTTCAGGCTGCATGATGTGCATAGTAGCATGCTGGTATTAGGGAGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR TCA 72 bp | CTAATACCAGCATGCTACTATGCACATCATGCAGCCTaGAGATCCCCCTGCCTCGGACTCCTGGTGCTAGGA | + |
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Preference number: 3 (lower is better) Translates to: LIPACYYAHHAA*RSPCLGLLVLG Trigger: TCCTAGCACCAGGAGTCCGAGGCAGGGGGATCTTCAGGCTGCATGATGTGCATAGTAGCATGCTGGTATTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR GCA 72 bp | CACAGATACCCACTCCCTAATACCAGCATGCTACTATaGACATCATGCAGCCTGAAGATCCCCCTGCCTCGG | + |
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Preference number: 3 (lower is better) Translates to: HRYPLPNTSMLL*TSCSLKIPLPR Trigger: CCGAGGCAGGGGGATCTTCAGGCTGCATGATGTGCATAGTAGCATGCTGGTATTAGGGAGTGGGTATCTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR CCA 72 bp | ATCAGTGCTTTCTCAGCAAGCAGTACCAAATGTCTGTaGCCAGCCCTCTCCTGGCTTAGGTCTGCCCACTTT | + |
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Preference number: 3 (lower is better) Translates to: ISAFSASSTKCL*PALSWLRSAHF Trigger: AAAGTGGGCAGACCTAAGCCAGGAGAGGGCTGGCCACAGACATTTGGTACTGCTTGCTGAGAAAGCACTGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR GCA 72 bp | TGTATAGCTGCCACAGCAAGCAAGAATATAGTTATTTaGTTGTCACTGCCGACTCCAACCCTGGGCTACAAC | + |
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Preference number: 3 (lower is better) Translates to: CIAATASKNIVI*LSLPTPTLGYN Trigger: GTTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTTGCTGTGGCAGCTATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR TCA 72 bp | TGCACCCACCAAGTACAACTTCAAAGACAAGAAAGGTaGACCAAAGGCCAGTACACATTGTTTCAAAGATGG | + |
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Preference number: 3 (lower is better) Translates to: CTHQVQLQRQER*TKGQYTLFQRW Trigger: CCATCTTTGAAACAATGTGTACTGGCCTTTGGTTCACCTTTCTTGTCTTTGAAGTTGTACTTGGTGGGTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR GCA 72 bp | GAACCCTCTTACCTATACCGTAAATTTCTGTATAGCTaGCACAGCAAGCAAGAATATAGTTATTTGCTTGTC | + |
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Preference number: 3 (lower is better) Translates to: EPSYLYRKFLYS*HSKQEYSYLLV Trigger: GACAAGCAAATAACTATATTCTTGCTTGCTGTGGCAGCTATACAGAAATTTACGGTATAGGTAAGAGGGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| CDS-3UTR CCA 90 bp | CAAGCAGTACCAAATGTCTGTGGCCAGCCCTCTCCTGGCTTAGGTCTGCCCACTCTGGGTGGCGCAGGCTaGCGCTTCAGCTGCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: QAVPNVCGQPSPGLGLPTLGGAG*RFSCTQ Trigger: CTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAG...AGTGGGCAGACCTAAGCCAGGAGAGGGCTGGCCACAGACATTTGGTACTGCTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| CDS-3UTR CCA 90 bp | CAAGCAGTACCAAATGTCTGTGGCCAGCCCTCTCCTGGCTTAGGTCTGCCCACTGCTTCCTTTTTCTTCTaGTCATTCTCCTTCACCCGC | + |
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Preference number: 4 (lower is better) Translates to: QAVPNVCGQPSPGLGLPTASFFF*SFSFTR Trigger: GCGGGTGAAGGAGAATGACCAGAAGAAAAAGGAAGC...AGTGGGCAGACCTAAGCCAGGAGAGGGCTGGCCACAGACATTTGGTACTGCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR CAA 72 bp | ATAGCTGCCACAGCAAGCAAGAATATAGTTATTTGCTaGTCACTGCCGACTCCAACCCTGGGCTACAACCTA | + |
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Preference number: 4 (lower is better) Translates to: IAATASKNIVIC*SLPTPTLGYNL Trigger: TAGGTTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTTGCTGTGGCAGCTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| 3UTR CAA 72 bp | CTGTATAGCTGCCACAGCAAGCAAGAATATAGTTATTaGCTTGTCACTGCCGACTCCAACCCTGGGCTACAA | + |
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Preference number: 4 (lower is better) Translates to: LYSCHSKQEYSY*LVTADSNPGLQ Trigger: TTGTAGCCCAGGGTTGGAGTCGGCAGTGACAAGCAAATAACTATATTCTTGCTTGCTGTGGCAGCTATACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| CDS-3UTR GCA 90 bp | TGGAGAATTTTGGTTATTTTCAAAGTGGGAACCACAGATACCCACTCCCTAATATTTGAGTGCTTGATGTaGTCAATCCGCACATTGATC | + |
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Preference number: 4 (lower is better) Translates to: WRILVIFKVGTTDTHSLIFECLM*SIRTLI Trigger: GATCAATGTGCGGATTGAGCACATCAAGCACTCAAA...TATTAGGGAGTGGGTATCTGTGGTTCCCACTTTGAAAATAACCAAAATTCTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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| CDS-3UTR CAA 90 bp | GCACCCACCAAGTACAACTTCAAAGACAAGAAAGGTGAACCAAAGGCCAGTACACTCTTGGCCAGAATTTaGCCCTTAACCTGCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: APTKYNFKDKKGEPKASTLLARI*PLTCLL Trigger: CAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAG...TGTACTGGCCTTTGGTTCACCTTTCTTGTCTTTGAAGTTGTACTTGGTGGGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035983.12 |
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