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Pregenerated sensors for RPL18A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045128

Ensembl transcript IDs: ENSMUST00000054220.10, ENSMUST00000212796.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATTCTTAGGCCTGAGACAGCAGCACCCTGGAGTCCAGAAACAGACTaGTACCCCTCAGTGTCACAGGCAGGGCTCAGGCTATGTCCTAGA +
Preference number: 1 (lower is better)
Translates to: ILRPETAAPWSPETD*YPSVSQAGLRLCPR
Trigger: TCTAGGACATAGCCTGAGCCCTGCCTGTGACACTGAGGGGTAGCAGTCTGTTTCTGGACTCCAGGGTGCTGCTGTCTCAGGCCTAAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR CCA 90 bp ATTATAGTCATGTCTGGAATTCTTAGGCCTGAGACAGCAGCACCCTaGAGTCCAGAAACAGACTGCTACCCCTCAGTGTCACAGGCAGGG +
Preference number: 1 (lower is better)
Translates to: IIVMSGILRPETAAP*SPETDCYPSVSQAG
Trigger: CCCTGCCTGTGACACTGAGGGGTAGCAGTCTGTTTCTGGACTCCAGGGTGCTGCTGTCTCAGGCCTAAGAATTCCAGACATGACTATAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR CCA 90 bp TATCTTCTAAGTGCCATTCACACATTGCTATCCCTGAAAGTACTCTaGGCCATGTGTAGACATGGAAATGTCTACAAGGGGCCAGAGGCA +
Preference number: 1 (lower is better)
Translates to: YLLSAIHTLLSLKVL*AMCRHGNVYKGPEA
Trigger: TGCCTCTGGCCCCTTGTAGACATTTCCATGTCTACACATGGCCCAGAGTACTTTCAGGGATAGCAATGTGTGAATGGCACTTAGAAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR-3UTR TCA 90 bp CCTGGAGTCCAGAAACAGACTGCTACCCCTCAGTGTCACAGGCAGGGCTCAGGCGCCACTGAGCAAGGCTaGCAGGCAGGTGAGCAGGGC +
Preference number: 2 (lower is better)
Translates to: PGVQKQTATPQCHRQGSGATEQG*QAGEQG
Trigger: GCCCTGCTCACCTGCCTGTCAGCCTTGCTCAGTGGC...GCCTGAGCCCTGCCTGTGACACTGAGGGGTAGCAGTCTGTTTCTGGACTCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR-3UTR TCA 90 bp CCTGGAGTCCAGAAACAGACTGCTACCCCTCAGTGTCACAGGCAGGGCTCAGGCAGGCTGACAGGCAGGTaGGCAGGGCTAGCATGTTGT +
Preference number: 2 (lower is better)
Translates to: PGVQKQTATPQCHRQGSGRLTGR*AGLACC
Trigger: ACAACATGCTAGCCCTGCTCACCTGCCTGTCAGCCT...GCCTGAGCCCTGCCTGTGACACTGAGGGGTAGCAGTCTGTTTCTGGACTCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR-3UTR CCA 90 bp CTCCCTGTGACAGAACAGTCCCAGGAAGCTTCAGGCCTGTGCCCTTTCAAGATTACTGTGGGGCTTGGCTaGCCTCATTTCCACCTAGCT +
Preference number: 2 (lower is better)
Translates to: LPVTEQSQEASGLCPFKITVGLG*PHFHLA
Trigger: AGCTAGGTGGAAATGAGGCCAGCCAAGCCCCACAGT...AATCTTGAAAGGGCACAGGCCTGAAGCTTCCTGGGACTGTTCTGTCACAGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR-3UTR GCA 90 bp CATGGAAATGTCTACAAGGGGCCAGAGGCAAGTCCCTCAGAGGTAGCAATTGTAGAAGCTTCAGGCCTGTaGCCTTTCAAGATTGGGCAC +
Preference number: 2 (lower is better)
Translates to: HGNVYKGPEASPSEVAIVEASGL*PFKIGH
Trigger: GTGCCCAATCTTGAAAGGGCACAGGCCTGAAGCTTC...TACAATTGCTACCTCTGAGGGACTTGCCTCTGGCCCCTTGTAGACATTTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR-3UTR CCA 90 bp GTTTCCTCCATCATTCACCAAAGCGTAACCCTGTCCCCATCTAAAGCTTGCAAGGAGACAGCAGCACCCTaGAGTCCAGAAACAGACTGC +
Preference number: 2 (lower is better)
Translates to: VSSIIHQSVTLSPSKACKETAAP*SPETDC
Trigger: GCAGTCTGTTTCTGGACTCCAGGGTGCTGCTGTCTC...CTTGCAAGCTTTAGATGGGGACAGGGTTACGCTTTGGTGAATGATGGAGGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR GCA 72 bp CCTGAGACAGCAGCACCCTGGAGTCCAGAAACAGACTaGTACCCCTCAGTGTCACAGGCAGGGCTCAGGCTA +
Preference number: 3 (lower is better)
Translates to: PETAAPWSPETD*YPSVSQAGLRL
Trigger: TAGCCTGAGCCCTGCCTGTGACACTGAGGGGTAGCAGTCTGTTTCTGGACTCCAGGGTGCTGCTGTCTCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR GCA 72 bp ATTCACCAAAGCGTAACCCTGTCCCCATCTAAAGCTTaGAAGCTCACTGTGGGGCTTGGCTGGCCTCATTTC +
Preference number: 3 (lower is better)
Translates to: IHQSVTLSPSKA*KLTVGLGWPHF
Trigger: GAAATGAGGCCAGCCAAGCCCCACAGTGAGCTTGCAAGCTTTAGATGGGGACAGGGTTACGCTTTGGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
3UTR CAA 72 bp AGCAAGGCTGACAGGCAGGTGAGCAGGGCTAGCATGTaGTTAGGGACGGGACCAACTGGGACCTCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: SKADRQVSRASM*LGTGPTGTSPG
Trigger: CCCTGGAGAGGTCCCAGTTGGTCCCGTCCCTAACAACATGCTAGCCCTGCTCACCTGCCTGTCAGCCTTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
CDS-3UTR GCA 90 bp TGCAGTAGGTTCCTCCCTGTGACAGAACAGTCCCAGGAAGCTTCAGGCCTGTGCGTAGCACTGTGTGACTaGACCAGCAGTGGTCAGGTC +
Preference number: 4 (lower is better)
Translates to: CSRFLPVTEQSQEASGLCVALCD*TSSGQV
Trigger: GACCTGACCACTGCTGGTGCAGTCACACAGTGCTAC...GCACAGGCCTGAAGCTTCCTGGGACTGTTCTGTCACAGGGAGGAACCTACTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
CDS-3UTR GCA 90 bp AAAGCTTGCAAGCTCACTGTGGGGCTTGGCTGGCCTCATTTCCACCTAGCTGAACTGGCCGGCGGCACTTaGCAGCTGCAATCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: KACKLTVGLGWPHFHLAELAGGT*QLQSLP
Trigger: TGGAAGAGATTGCAGCTGGCAAGTGCCGCCGGCCAG...TTCAGCTAGGTGGAAATGAGGCCAGCCAAGCCCCACAGTGAGCTTGCAAGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
CDS-3UTR TCA 90 bp CTCCCTGTGACAGAACAGTCCCAGGAAGCTTCAGGCCTGTGCCCTTTCAAGATTCTCGGTAGCACTGTGTaGCTGCACCAGCAGTGGTCA +
Preference number: 4 (lower is better)
Translates to: LPVTEQSQEASGLCPFKILGSTV*LHQQWS
Trigger: TGACCACTGCTGGTGCAGTCACACAGTGCTACCGAG...AATCTTGAAAGGGCACAGGCCTGAAGCTTCCTGGGACTGTTCTGTCACAGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
CDS-3UTR CCA 90 bp AAAGCTTGCAAGCTCACTGTGGGGCTTGGCTGGCCTCATTTCCACCTAGCTGAATACAGTGGTGGTGTGTaGCATTTTGGGGTTGGCAAG +
Preference number: 4 (lower is better)
Translates to: KACKLTVGLGWPHFHLAEYSGGV*HFGVGK
Trigger: CTTGCCAACCCCAAAATGCCACACACCACCACTGTA...TTCAGCTAGGTGGAAATGAGGCCAGCCAAGCCCCACAGTGAGCTTGCAAGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
CDS-3UTR CAA 90 bp CTGAGACAGCAGCACCCTGGAGTCCAGAAACAGACTGCTACCCCTCAGTGTCACGCTGGCCGGCGGCACTaGCCAGCTGCAATCTCTTCC +
Preference number: 5 (lower is better)
Translates to: LRQQHPGVQKQTATPQCHAGRRH*PAAISS
Trigger: GGAAGAGATTGCAGCTGGCAAGTGCCGCCGGCCAGC...GTGACACTGAGGGGTAGCAGTCTGTTTCTGGACTCCAGGGTGCTGCTGTCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054220.10
CDS GCA 72 bp GGGAGGGAAGCAATCAGTGTCCAGAGACTGTCCGTGTaGAACCACCCCCTGCAGCCCTGCGTCAGCCCCACA +
Preference number: 6 (lower is better)
Translates to: GREAISVQRLSV*NHPLQPCVSPT
Trigger: TGTGGGGCTGACGCAGGGCTGCAGGGGGTGGTTGCACACGGACAGTCTCTGGACACTGATTGCTTCCCTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212796.2