Pregenerated sensors for RPL15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000012405Ensembl transcript IDs: ENSMUST00000080281.14
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTTGGGAAACTACTCCAAGGCATCGCACAAATAGAAATAAAAGTGTaGTTAAGTATGGCCTTTGTGAAATGTCAACATCCAGGCAGTTAC | + |
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Preference number: 1 (lower is better) Translates to: FGKLLQGIAQIEIKV*LSMAFVKCQHPGSY Trigger: GTAACTGCCTGGATGTTGACATTTCACAAAGGCCATACTTAACCACACTTTTATTTCTATTTGTGCGATGCCTTGGAGTAGTTTCCCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| 3UTR CCA 90 bp | ACTCTAGATCCAACAGAAAGTGAAACCTCTTCCAACAAATTTACCTaGTCTTCTGAAAATAACACTGGATTCAATTCTCAAAATGTGGGT | + |
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Preference number: 1 (lower is better) Translates to: TLDPTESETSSNKFT*SSENNTGFNSQNVG Trigger: ACCCACATTTTGAGAATTGAATCCAGTGTTATTTTCAGAAGACCAGGTAAATTTGTTGGAAGAGGTTTCACTTTCTGTTGGATCTAGAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| 3UTR-3UTR TCA 90 bp | AGAAAATTTCTCTATATTGTAGGTAGTCCTGGAACCAGAGAGCCATCTGCCTCTGCACAAAACAGGTTTTaGAACCCTCTCTTCCTACAC | + |
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Preference number: 2 (lower is better) Translates to: RKFLYIVGSPGTREPSASAQNRF*NPLFLH Trigger: GTGTAGGAAGAGAGGGTTTCAAAACCTGTTTTGTGC...AGAGGCAGATGGCTCTCTGGTTCCAGGACTACCTACAATATAGAGAAATTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| 3UTR-3UTR GCA 90 bp | GTACTCATCAAACTCCCAAGCAGCCACTTCAGTGAACCAAAAGATGCCATCGTAAGATATGCCATCACCTaGAGTTTTCAATTATTGCAC | + |
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Preference number: 2 (lower is better) Translates to: VLIKLPSSHFSEPKDAIVRYAIT*SFQLLH Trigger: GTGCAATAATTGAAAACTGCAGGTGATGGCATATCT...TACGATGGCATCTTTTGGTTCACTGAAGTGGCTGCTTGGGAGTTTGATGAGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| 3UTR-3UTR GCA 90 bp | ATAAAAGTGTGGTTAAGTATGGCCTTTGTGAAATGTCAACATCCAGGCAGTTACGTAGATTCTATCTCATaGACCAACACATCCAGGGTC | + |
|
Preference number: 2 (lower is better) Translates to: IKVWLSMAFVKCQHPGSYVDSIS*TNTSRV Trigger: GACCCTGGATGTGTTGGTGCATGAGATAGAATCTAC...GTAACTGCCTGGATGTTGACATTTCACAAAGGCCATACTTAACCACACTTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| 3UTR-3UTR GCA 90 bp | ATAAAAGTGTGGTTAAGTATGGCCTTTGTGAAATGTCAACATCCAGGCAGTTACTGGTTGATATTAACTTaGAACCACAACCAAGTTTAC | + |
|
Preference number: 2 (lower is better) Translates to: IKVWLSMAFVKCQHPGSYWLILT*NHNQVY Trigger: GTAAACTTGGTTGTGGTTGCAAGTTAATATCAACCA...GTAACTGCCTGGATGTTGACATTTCACAAAGGCCATACTTAACCACACTTTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| 3UTR GCA 72 bp | AAAAGATGCCATCGTAAAGCTGTAGATTCTATCTCATaGACCAACACATCCAGGGTCAGTTTCAGGACTTTT | + |
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Preference number: 3 (lower is better) Translates to: KRCHRKAVDSIS*TNTSRVSFRTF Trigger: AAAAGTCCTGAAACTGACCCTGGATGTGTTGGTGCATGAGATAGAATCTACAGCTTTACGATGGCATCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| 3UTR-3UTR CAA 90 bp | ATAAAAGTGTGGTTAAGTATGGCCTTTGTGAAATGTCAACATCCAGGCAGTTACTGCACAAAACAGGTTTaGAAACCCTCTCTTCCTACA | + |
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Preference number: 3 (lower is better) Translates to: IKVWLSMAFVKCQHPGSYCTKQV*KPSLPT Trigger: TGTAGGAAGAGAGGGTTTCAAAACCTGTTTTGTGCA...GTAACTGCCTGGATGTTGACATTTCACAAAGGCCATACTTAACCACACTTTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| 3UTR CCA 72 bp | CCAACAGAAAGTGAAACCTCTTCCAACAAATTTACCTaGTCTTCTGAAAATAACACTGGATTCAATTCTCAA | + |
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Preference number: 3 (lower is better) Translates to: PTESETSSNKFT*SSENNTGFNSQ Trigger: TTGAGAATTGAATCCAGTGTTATTTTCAGAAGACCAGGTAAATTTGTTGGAAGAGGTTTCACTTTCTGTTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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| CDS-3UTR CCA 90 bp | TTCAACCTTCATCTCCAAATCCATACTCTAGATCCAACAGAAAGTGAAACCTCTCTCAAAGCCCCACAATaGCGCCCAGCTCTCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: FNLHLQIHTLDPTESETSLKAPQ*RPALSS Trigger: TGAGGAGAGAGCTGGGCGCCATTGTGGGGCTTTGAG...AGAGGTTTCACTTTCTGTTGGATCTAGAGTATGGATTTGGAGATGAAGGTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080281.14 |
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