Pregenerated sensors for RPL13A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074129Ensembl transcript IDs: ENSMUST00000150350.9, ENSMUST00000210931.3
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCTTTGTGGTCTGCTGGGAAGGAGCAAGGCAGTGCTCCAAGTGTaGACTTGTGAACCCCAGCTCATGTGCAGATCTCATTTTCATAGC | + |
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Preference number: 1 (lower is better) Translates to: LLCGLLGRSKAVLQV*TCEPQLMCRSHFHS Trigger: GCTATGAAAATGAGATCTGCACATGAGCTGGGGTTCACAAGTGCACACTTGGAGCACTGCCTTGCTCCTTCCCAGCAGACCACAAAGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR GCA 90 bp | CCAGAAAAATACTGCTTTGTGGTCTGCTGGGAAGGAGCAAGGCAGTaGTCCAAGTGTGCACTTGTGAACCCCAGCTCATGTGCAGATCTC | + |
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Preference number: 1 (lower is better) Translates to: PEKYCFVVCWEGARQ*SKCALVNPSSCADL Trigger: GAGATCTGCACATGAGCTGGGGTTCACAAGTGCACACTTGGAGCACTGCCTTGCTCCTTCCCAGCAGACCACAAAGCAGTATTTTTCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR GCA 90 bp | CTACTCATTTTCAACACTGAAGCTCAACTGATTCATCCCATGGTTTaGACTTTAATAAAAACTCATGCAGGTGGTGCGCTGTCAGCTCTC | + |
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Preference number: 1 (lower is better) Translates to: LLIFNTEAQLIHPMV*TLIKTHAGGALSAL Trigger: GAGAGCTGACAGCGCACCACCTGCATGAGTTTTTATTAAAGTGCAAACCATGGGATGAATCAGTTGAGCTTCAGTGTTGAAAATGAGTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR CCA 90 bp | AATAATTTATTAGCACATAAAATCCTCCAGAAAAATACTGCTTTGTaGTCTGCTGGGAAGGAGCAAGGCAGTGCTCCAAGTGTGCACTTG | + |
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Preference number: 1 (lower is better) Translates to: NNLLAHKILQKNTAL*SAGKEQGSAPSVHL Trigger: CAAGTGCACACTTGGAGCACTGCCTTGCTCCTTCCCAGCAGACCACAAAGCAGTATTTTTCTGGAGGATTTTATGTGCTAATAAATTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR-3UTR TCA 90 bp | CTAATGTCCCCTCTACCCACAGGAGCAGTGCCTAAGGAACCTTTGGTCCCCACTCAGGCCAGGCAGGCATaGGGCAAACAGTCTTTATTG | + |
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Preference number: 2 (lower is better) Translates to: LMSPLPTGAVPKEPLVPTQARQA*GKQSLL Trigger: CAATAAAGACTGTTTGCCTCATGCCTGCCTGGCCTG...AGTGGGGACCAAAGGTTCCTTAGGCACTGCTCCTGTGGGTAGAGGGGACATTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR-3UTR GCA 90 bp | AGGAGCAAGGCAGTGCTCCAAGTGTGCACTTGTGAACCCCAGCTCATGTGCAGAAACTCATGCAGGTGGTaGGCTGTCAGCTCTCTAATG | + |
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Preference number: 2 (lower is better) Translates to: RSKAVLQVCTCEPQLMCRNSCRW*AVSSLM Trigger: CATTAGAGAGCTGACAGCGCACCACCTGCATGAGTT...TCTGCACATGAGCTGGGGTTCACAAGTGCACACTTGGAGCACTGCCTTGCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR-3UTR TCA 90 bp | AATAGGGTACTTGGTCAGGTGGGTGGGGCAGCCCTGCTACTCATTTTCAACACTCAGGCCAGGCAGGCATaGGGCAAACAGTCTTTATTG | + |
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Preference number: 2 (lower is better) Translates to: NRVLGQVGGAALLLIFNTQARQA*GKQSLL Trigger: CAATAAAGACTGTTTGCCTCATGCCTGCCTGGCCTG...AGTGTTGAAAATGAGTAGCAGGGCTGCCCCACCCACCTGACCAAGTACCCTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR-3UTR GCA 90 bp | ATAGGGTACTTGGTCAGGTGGGTGGGGCAGCCCTGCTACTCATTTTCAACACTGAACTCATGCAGGTGGTaGGCTGTCAGCTCTCTAATG | + |
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Preference number: 2 (lower is better) Translates to: IGYLVRWVGQPCYSFSTLNSCRW*AVSSLM Trigger: CATTAGAGAGCTGACAGCGCACCACCTGCATGAGTT...CAGTGTTGAAAATGAGTAGCAGGGCTGCCCCACCCACCTGACCAAGTACCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR-3UTR GCA 90 bp | GAAGCTCAACTGATTCATCCCATGGTTTGCACTTTAATAAAAACTCATGCAGGTTACCCACAGGAGCAGTaGCTAAGGAACCTTTGGTCC | + |
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Preference number: 2 (lower is better) Translates to: EAQLIHPMVCTLIKTHAGYPQEQ*LRNLWS Trigger: GGACCAAAGGTTCCTTAGGCACTGCTCCTGTGGGTA...ACCTGCATGAGTTTTTATTAAAGTGCAAACCATGGGATGAATCAGTTGAGCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR CAA 90 bp | TCAAATAATTTATTAGCACATAAAATCCTCCAGAAAAATACTGCTTaGTGGTCTGCTGGGAAGGAGCAAGGCAGTGCTCCAAGTGTGCAC | + |
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Preference number: 2 (lower is better) Translates to: SNNLLAHKILQKNTA*WSAGKEQGSAPSVH Trigger: GTGCACACTTGGAGCACTGCCTTGCTCCTTCCCAGCAGACCACAAAGCAGTATTTTTCTGGAGGATTTTATGTGCTAATAAATTATTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR-3UTR GCA 90 bp | GCACATAAAATCCTCCAGAAAAATACTGCTTTGTGGTCTGCTGGGAAGGAGCAATCTCATTTTCATAGCTaGAGAATAGGGTACTTGGTC | + |
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Preference number: 2 (lower is better) Translates to: AHKILQKNTALWSAGKEQSHFHS*RIGYLV Trigger: GACCAAGTACCCTATTCTGCAGCTATGAAAATGAGA...TTGCTCCTTCCCAGCAGACCACAAAGCAGTATTTTTCTGGAGGATTTTATGTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR GCA 72 bp | TACTGCTTTGTGGTCTGCTGGGAAGGAGCAAGGCAGTaGTCCAAGTGTGCACTTGTGAACCCCAGCTCATGT | + |
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Preference number: 3 (lower is better) Translates to: YCFVVCWEGARQ*SKCALVNPSSC Trigger: ACATGAGCTGGGGTTCACAAGTGCACACTTGGAGCACTGCCTTGCTCCTTCCCAGCAGACCACAAAGCAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR TCA 72 bp | GGTGGGTGGGGCAGCCCTGCTACTCATTTTCAACACTaGAGCTCAACTGATTCATCCCATGGTTTGCACTTT | + |
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Preference number: 3 (lower is better) Translates to: GGWGSPATHFQH*SSTDSSHGLHF Trigger: AAAGTGCAAACCATGGGATGAATCAGTTGAGCTTCAGTGTTGAAAATGAGTAGCAGGGCTGCCCCACCCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR GCA 72 bp | GTGCTCCAAGTGTGCACTTGTGAACCCCAGCTCATGTaGAGATCTCATTTTCATAGCTGCAGAATAGGGTAC | + |
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Preference number: 3 (lower is better) Translates to: VLQVCTCEPQLM*RSHFHSCRIGY Trigger: GTACCCTATTCTGCAGCTATGAAAATGAGATCTGCACATGAGCTGGGGTTCACAAGTGCACACTTGGAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR CCA 72 bp | TCCCATGGTTTGCACTTTAATAAAAACTCATGCAGGTaGTGCGCTGTCAGCTCTCTAATGTCCCCTCTACCC | + |
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Preference number: 3 (lower is better) Translates to: SHGLHFNKNSCR*CAVSSLMSPLP Trigger: GGGTAGAGGGGACATTAGAGAGCTGACAGCGCACCACCTGCATGAGTTTTTATTAAAGTGCAAACCATGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR-3UTR CAA 90 bp | GCACATAAAATCCTCCAGAAAAATACTGCTTTGTGGTCTGCTGGGAAGGAGCAAGTGCCTAAGGAACCTTaGGTCCCCACTTCCCTAGTT | + |
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Preference number: 3 (lower is better) Translates to: AHKILQKNTALWSAGKEQVPKEP*VPTSLV Trigger: AACTAGGGAAGTGGGGACCAAAGGTTCCTTAGGCAC...TTGCTCCTTCCCAGCAGACCACAAAGCAGTATTTTTCTGGAGGATTTTATGTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR GCA 72 bp | CATGGTTTGCACTTTAATAAAAACTCATGCAGGTGGTaGGCTGTCAGCTCTCTAATGTCCCCTCTACCCACA | + |
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Preference number: 3 (lower is better) Translates to: HGLHFNKNSCRW*AVSSLMSPLPT Trigger: TGTGGGTAGAGGGGACATTAGAGAGCTGACAGCGCACCACCTGCATGAGTTTTTATTAAAGTGCAAACCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR GCA 72 bp | GATTCATCCCATGGTTTGCACTTTAATAAAAACTCATaGAGGTGGTGCGCTGTCAGCTCTCTAATGTCCCCT | + |
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Preference number: 3 (lower is better) Translates to: DSSHGLHFNKNS*RWCAVSSLMSP Trigger: AGGGGACATTAGAGAGCTGACAGCGCACCACCTGCATGAGTTTTTATTAAAGTGCAAACCATGGGATGAATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR CCA 72 bp | TTAGCACATAAAATCCTCCAGAAAAATACTGCTTTGTaGTCTGCTGGGAAGGAGCAAGGCAGTGCTCCAAGT | + |
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Preference number: 3 (lower is better) Translates to: LAHKILQKNTAL*SAGKEQGSAPS Trigger: ACTTGGAGCACTGCCTTGCTCCTTCCCAGCAGACCACAAAGCAGTATTTTTCTGGAGGATTTTATGTGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| 3UTR CAA 72 bp | TCCCCTCTACCCACAGGAGCAGTGCCTAAGGAACCTTaGGTCCCCACTTCCCTAGTTGGCGGCGGAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SPLPTGAVPKEP*VPTSLVGGGGR Trigger: CCTTCCTCCGCCGCCAACTAGGGAAGTGGGGACCAAAGGTTCCTTAGGCACTGCTCCTGTGGGTAGAGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| CDS-3UTR TCA 90 bp | CCCACAGGAGCAGTGCCTAAGGAACCTTTGGTCCCCACTTCCCTAGTTGGCGGCTCAGCCGAACAACCTTaGGAGCAGCAGGGACCACCA | + |
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Preference number: 4 (lower is better) Translates to: PTGAVPKEPLVPTSLVGGSAEQP*EQQGPP Trigger: TGGTGGTCCCTGCTGCTCTCAAGGTTGTTCGGCTGA...GCCGCCAACTAGGGAAGTGGGGACCAAAGGTTCCTTAGGCACTGCTCCTGTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| CDS-3UTR GCA 90 bp | CTAATGTCCCCTCTACCCACAGGAGCAGTGCCTAAGGAACCTTTGGTCCCCACTCAGTGCGCCAGAAAATaGGGCTGGGGGCTCGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: LMSPLPTGAVPKEPLVPTQCARK*GWGLGS Trigger: ACTTCCGAGCCCCCAGCCGCATTTTCTGGCGCACTG...AGTGGGGACCAAAGGTTCCTTAGGCACTGCTCCTGTGGGTAGAGGGGACATTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| CDS-3UTR TCA 90 bp | AGAATAGGGTACTTGGTCAGGTGGGTGGGGCAGCCCTGCTACTCATTTTCAACATCAGCCGAACAACCTTaGGAGCAGCAGGGACCACCA | + |
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Preference number: 4 (lower is better) Translates to: RIGYLVRWVGQPCYSFSTSAEQP*EQQGPP Trigger: TGGTGGTCCCTGCTGCTCTCAAGGTTGTTCGGCTGA...TGTTGAAAATGAGTAGCAGGGCTGCCCCACCCACCTGACCAAGTACCCTATTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR CAA 72 bp | TGCAGATCTCATTTTCATAGCTGCAGAATAGGGTACTaGGTCAGGTGGGTGGGGCAGCCCTGCTACTCATTT | + |
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Preference number: 4 (lower is better) Translates to: CRSHFHSCRIGY*VRWVGQPCYSF Trigger: AAATGAGTAGCAGGGCTGCCCCACCCACCTGACCAAGTACCCTATTCTGCAGCTATGAAAATGAGATCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150350.9 ENSMUST00000210931.3 |
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| 3UTR CAA 72 bp | TTATTAGCACATAAAATCCTCCAGAAAAATACTGCTTaGTGGTCTGCTGGGAAGGAGCAAGGCAGTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LLAHKILQKNTA*WSAGKEQGSAP Trigger: TGGAGCACTGCCTTGCTCCTTCCCAGCAGACCACAAAGCAGTATTTTTCTGGAGGATTTTATGTGCTAATAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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| CDS-3UTR CAA 90 bp | GGAGCAGTGCCTAAGGAACCTTTGGTCCCCACTTCCCTAGTTGGCGGCGGAGGAATCCCATCCAACACCTaGAGGCGCTCCAGGGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: GAVPKEPLVPTSLVGGGGIPSNT*RRSRAA Trigger: GGCTGCCCTGGAGCGCCTCAAGGTGTTGGATGGGAT...TCCTCCGCCGCCAACTAGGGAAGTGGGGACCAAAGGTTCCTTAGGCACTGCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150350.9 |
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