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Pregenerated sensors for RPL12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038900

Ensembl transcript IDs: ENSMUST00000102811.10, ENSMUST00000126610.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCAGGATGGGGAGGATCCAGAGCAAGCTTTAGTGTATCATCCATCTaGCTTAAGACTCATAGCTCTGAACCTCCCAGCCACGCCCACAGA +
Preference number: 1 (lower is better)
Translates to: PGWGGSRASFSVSSI*LKTHSSEPPSHAHR
Trigger: TCTGTGGGCGTGGCTGGGAGGTTCAGAGCTATGAGTCTTAAGTCAGATGGATGATACACTAAAGCTTGCTCTGGATCCTCCCCATCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR GCA 90 bp GCAAAGGTCACAAAGCATTATTTTCCCTTGTGTTGTTACTGCTACTaGCATTGGTCCAGGTTTACGCTGCTCTTTCAATATGCCCTGCTG +
Preference number: 1 (lower is better)
Translates to: AKVTKHYFPLCCYCY*HWSRFTLLFQYALL
Trigger: CAGCAGGGCATATTGAAAGAGCAGCGTAAACCTGGACCAATGGCAGTAGCAGTAACAACACAAGGGAAAATAATGCTTTGTGACCTTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR GCA 90 bp AAAAATGCAAAGGTCACAAAGCATTATTTTCCCTTGTGTTGTTACTaGTACTGCCATTGGTCCAGGTTTACGCTGCTCTTTCAATATGCC +
Preference number: 1 (lower is better)
Translates to: KNAKVTKHYFPLCCY*YCHWSRFTLLFQYA
Trigger: GGCATATTGAAAGAGCAGCGTAAACCTGGACCAATGGCAGTAGCAGTAACAACACAAGGGAAAATAATGCTTTGTGACCTTTGCATTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR-3UTR CCA 90 bp TTTCCCTTGTGTTGTTACTGCTACTGCCATTGGTCCAGGTTTACGCTGCTCTTTACTGTACCTCCAGGATaGGGAGGATCCAGAGCAAGC +
Preference number: 2 (lower is better)
Translates to: FPLCCYCYCHWSRFTLLFTVPPG*GGSRAS
Trigger: GCTTGCTCTGGATCCTCCCCATCCTGGAGGTACAGT...AAAGAGCAGCGTAAACCTGGACCAATGGCAGTAGCAGTAACAACACAAGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR CAA 90 bp TTATTGGAAAAATGCAAAGGTCACAAAGCATTATTTTCCCTTGTGTaGTTACTGCTACTGCCATTGGTCCAGGTTTACGCTGCTCTTTCA +
Preference number: 2 (lower is better)
Translates to: LLEKCKGHKALFSLV*LLLLPLVQVYAALS
Trigger: TGAAAGAGCAGCGTAAACCTGGACCAATGGCAGTAGCAGTAACAACACAAGGGAAAATAATGCTTTGTGACCTTTGCATTTTTCCAATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR CCA 72 bp AATTGCTATGCCAGAGATCCCACTGTACCTCCAGGATaGGGAGGATCCAGAGCAAGCTTTAGTGTATCATCC +
Preference number: 3 (lower is better)
Translates to: NCYARDPTVPPG*GGSRASFSVSS
Trigger: GGATGATACACTAAAGCTTGCTCTGGATCCTCCCCATCCTGGAGGTACAGTGGGATCTCTGGCATAGCAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR CCA 72 bp CATTATTTTCCCTTGTGTTGTTACTGCTACTGCCATTaGTCCAGGTTTACGCTGCTCTTTCAATATGCCCTG +
Preference number: 3 (lower is better)
Translates to: HYFPLCCYCYCH*SRFTLLFQYAL
Trigger: CAGGGCATATTGAAAGAGCAGCGTAAACCTGGACCAATGGCAGTAGCAGTAACAACACAAGGGAAAATAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR GCA 72 bp AAGGTCACAAAGCATTATTTTCCCTTGTGTTGTTACTaGTACTGCCATTGGTCCAGGTTTACGCTGCTCTTT +
Preference number: 3 (lower is better)
Translates to: KVTKHYFPLCCY*YCHWSRFTLLF
Trigger: AAAGAGCAGCGTAAACCTGGACCAATGGCAGTAGCAGTAACAACACAAGGGAAAATAATGCTTTGTGACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR CAA 72 bp AGTGCCTTTCCTTCTAGGCTGTACTACCCCAGGACTTaGAATCAGTGCTTTCTAGATCCTGCTACCACAGCC +
Preference number: 4 (lower is better)
Translates to: SAFPSRLYYPRT*NQCFLDPATTA
Trigger: GGCTGTGGTAGCAGGATCTAGAAAGCACTGATTCAAAGTCCTGGGGTAGTACAGCCTAGAAGGAAAGGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
CDS-3UTR GCA 90 bp ACGCTGCTCTTTCAATATGCCCTGCTGTACTTAGTAGCTTTTGTTAATTGTAGAGACCGGTGTCTCATCTaGCGGGCAATGTTGACAATC +
Preference number: 4 (lower is better)
Translates to: TLLFQYALLYLVAFVNCRDRCLI*RAMLTI
Trigger: GATTGTCAACATTGCCCGGCAGATGAGACACCGGTC...TCTACAATTAACAAAAGCTACTAAGTACAGCAGGGCATATTGAAAGAGCAGCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
3UTR CAA 72 bp AAATGCAAAGGTCACAAAGCATTATTTTCCCTTGTGTaGTTACTGCTACTGCCATTGGTCCAGGTTTACGCT +
Preference number: 4 (lower is better)
Translates to: KCKGHKALFSLV*LLLLPLVQVYA
Trigger: AGCGTAAACCTGGACCAATGGCAGTAGCAGTAACAACACAAGGGAAAATAATGCTTTGTGACCTTTGCATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126610.2
CDS CCA 72 bp CGCCAGAGCGTCGGGCTCCCTCCCCTCTTACACACGTaGCAGCCAAGGCCCAAGGGAGACCCGCCAGGCCCC +
Preference number: 6 (lower is better)
Translates to: RQSVGLPPLLHT*QPRPKGDPPGP
Trigger: GGGGCCTGGCGGGTCTCCCTTGGGCCTTGGCTGCCACGTGTGTAAGAGGGGAGGGAGCCCGACGCTCTGGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102811.10