Pregenerated sensors for RPL11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059291Ensembl transcript IDs: ENSMUST00000102536.11
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACCACAGCCCACCCACAGGGCACTCAATGCTCAGTCTCAGCTGTaGGGAGACACTGGAGTCCAGGACGCAGGCTGCCGCCGCCACCAG | + |
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Preference number: 1 (lower is better) Translates to: APQPTHRALNAQSQL*GDTGVQDAGCRRHQ Trigger: CTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGCATTGAGTGCCCTGTGGGTGGGCTGTGGTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR CCA 90 bp | CACCCACAGGGCACTCAATGCTCAGTCTCAGCTGTGGGGAGACACTaGAGTCCAGGACGCAGGCTGCCGCCGCCACCAGCAATTCTCATC | + |
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Preference number: 1 (lower is better) Translates to: HPQGTQCSVSAVGRH*SPGRRLPPPPAILI Trigger: GATGAGAATTGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGCATTGAGTGCCCTGTGGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR GCA 90 bp | CACTTAAAGGACCTCTGCACCACAGCCCACCCACAGGGCACTCAATaGTCAGTCTCAGCTGTGGGGAGACACTGGAGTCCAGGACGCAGG | + |
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Preference number: 1 (lower is better) Translates to: HLKDLCTTAHPQGTQ*SVSAVGRHWSPGRR Trigger: CCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGCATTGAGTGCCCTGTGGGTGGGCTGTGGTGCAGAGGTCCTTTAAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR GCA 90 bp | GCTCAGTCTCAGCTGTGGGGAGACACTGGAGTCCAGGACGCAGGCTaGCGCCGCCACCAGCAATTCTCATCGAGGCTTTCTTTAAGTGCT | + |
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Preference number: 1 (lower is better) Translates to: AQSQLWGDTGVQDAG*RRHQQFSSRLSLSA Trigger: AGCACTTAAAGAAAGCCTCGATGAGAATTGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR GCA 90 bp | AGGCTGCCGCCGCCACCAGCAATTCTCATCGAGGCTTTCTTTAAGTaGTTGTGGTCCCAGGATCTGAATGAGGCCACGCGCCTTTCACAA | + |
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Preference number: 1 (lower is better) Translates to: RLPPPPAILIEAFFK*LWSQDLNEATRLSQ Trigger: TTGTGAAAGGCGCGTGGCCTCATTCAGATCCTGGGACCACAAGCACTTAAAGAAAGCCTCGATGAGAATTGCTGGTGGCGGCGGCAGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR CCA 90 bp | CCGCCGCCACCAGCAATTCTCATCGAGGCTTTCTTTAAGTGCTTGTaGTCCCAGGATCTGAATGAGGCCACGCGCCTTTCACAAACACAC | + |
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Preference number: 1 (lower is better) Translates to: PPPPAILIEAFFKCL*SQDLNEATRLSQTH Trigger: GTGTGTTTGTGAAAGGCGCGTGGCCTCATTCAGATCCTGGGACCACAAGCACTTAAAGAAAGCCTCGATGAGAATTGCTGGTGGCGGCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR TCA 90 bp | CAATTCTCATCGAGGCTTTCTTTAAGTGCTTGTGGTCCCAGGATCTaGATGAGGCCACGCGCCTTTCACAAACACACAACTGTAACATGC | + |
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Preference number: 1 (lower is better) Translates to: QFSSRLSLSACGPRI*MRPRAFHKHTTVTC Trigger: GCATGTTACAGTTGTGTGTTTGTGAAAGGCGCGTGGCCTCATTCAGATCCTGGGACCACAAGCACTTAAAGAAAGCCTCGATGAGAATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR-3UTR TCA 90 bp | GGAGTCCAGGACGCAGGCTGCCGCCGCCACCAGCAATTCTCATCGAGGCTTTCTTGTGGTCCCAGGATCTaGATGAGGCCACGCGCCTTT | + |
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Preference number: 2 (lower is better) Translates to: GVQDAGCRRHQQFSSRLSCGPRI*MRPRAF Trigger: AAAGGCGCGTGGCCTCATTCAGATCCTGGGACCACA...AGAAAGCCTCGATGAGAATTGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR CCA 72 bp | GGCACTCAATGCTCAGTCTCAGCTGTGGGGAGACACTaGAGTCCAGGACGCAGGCTGCCGCCGCCACCAGCA | + |
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Preference number: 3 (lower is better) Translates to: GTQCSVSAVGRH*SPGRRLPPPPA Trigger: TGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGCATTGAGTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR CCA 72 bp | CCCACCCACAGGGCACTCAATGCTCAGTCTCAGCTGTaGGGAGACACTGGAGTCCAGGACGCAGGCTGCCGC | + |
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Preference number: 3 (lower is better) Translates to: PTHRALNAQSQL*GDTGVQDAGCR Trigger: GCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGCATTGAGTGCCCTGTGGGTGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR GCA 72 bp | CAGCTGTGGGGAGACACTGGAGTCCAGGACGCAGGCTaGCGCCGCCACCAGCAATTCTCATCGAGGCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: QLWGDTGVQDAG*RRHQQFSSRLS Trigger: AGAAAGCCTCGATGAGAATTGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR GCA 72 bp | GACCTCTGCACCACAGCCCACCCACAGGGCACTCAATaGTCAGTCTCAGCTGTGGGGAGACACTGGAGTCCA | + |
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Preference number: 3 (lower is better) Translates to: DLCTTAHPQGTQ*SVSAVGRHWSP Trigger: TGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGCATTGAGTGCCCTGTGGGTGGGCTGTGGTGCAGAGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR GCA 72 bp | AACCCAATACCTCTCAAAACCCACTTAAAGGACCTCTaGACCACAGCCCACCCACAGGGCACTCAATGCTCA | + |
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Preference number: 3 (lower is better) Translates to: NPIPLKTHLKDL*TTAHPQGTQCS Trigger: TGAGCATTGAGTGCCCTGTGGGTGGGCTGTGGTGCAGAGGTCCTTTAAGTGGGTTTTGAGAGGTATTGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR CCA 72 bp | CCAGCAATTCTCATCGAGGCTTTCTTTAAGTGCTTGTaGTCCCAGGATCTGAATGAGGCCACGCGCCTTTCA | + |
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Preference number: 3 (lower is better) Translates to: PAILIEAFFKCL*SQDLNEATRLS Trigger: TGAAAGGCGCGTGGCCTCATTCAGATCCTGGGACCACAAGCACTTAAAGAAAGCCTCGATGAGAATTGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| 3UTR TCA 72 bp | TCGAGGCTTTCTTTAAGTGCTTGTGGTCCCAGGATCTaGATGAGGCCACGCGCCTTTCACAAACACACAACT | + |
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Preference number: 3 (lower is better) Translates to: SRLSLSACGPRI*MRPRAFHKHTT Trigger: AGTTGTGTGTTTGTGAAAGGCGCGTGGCCTCATTCAGATCCTGGGACCACAAGCACTTAAAGAAAGCCTCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| CDS-3UTR GCA 90 bp | GGGAGACACTGGAGTCCAGGACGCAGGCTGCCGCCGCCACCAGCAATTCTCATCTGGCTCCGCGGACTGTaGAGTGAACAGCAATCTTCT | + |
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Preference number: 4 (lower is better) Translates to: GRHWSPGRRLPPPPAILIWLRGL*SEQQSS Trigger: AGAAGATTGCTGTTCACTGCACAGTCCGCGGAGCCA...GATGAGAATTGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| CDS-3UTR GCA 90 bp | ACCTCTGCACCACAGCCCACCCACAGGGCACTCAATGCTCAGTCTCAGCTGTGGCTCCAGAATTTCCTCTaGCTTGGCTCCGCGGACTGT | + |
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Preference number: 4 (lower is better) Translates to: TSAPQPTHRALNAQSQLWLQNFL*LGSADC Trigger: ACAGTCCGCGGAGCCAAGGCAGAGGAAATTCTGGAG...CCACAGCTGAGACTGAGCATTGAGTGCCCTGTGGGTGGGCTGTGGTGCAGAGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| CDS-3UTR GCA 90 bp | GAGTCCAGGACGCAGGCTGCCGCCGCCACCAGCAATTCTCATCGAGGCTTTCTTATTCCATCGTACTTCTaGTGGAACCAGCGCATGGCC | + |
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Preference number: 4 (lower is better) Translates to: ESRTQAAAATSNSHRGFLIPSYF*WNQRMA Trigger: GGCCATGCGCTGGTTCCAGCAGAAGTACGATGGAAT...AAGAAAGCCTCGATGAGAATTGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| CDS-3UTR CCA 90 bp | TGGAGTCCAGGACGCAGGCTGCCGCCGCCACCAGCAATTCTCATCGAGGCTTTCGTAGATCCCAATGCTTaGGTCGTATTTGATGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: WSPGRRLPPPPAILIEAFVDPNA*VVFDAQ Trigger: CTGGGCATCAAATACGACCCAAGCATTGGGATCTAC...GAAAGCCTCGATGAGAATTGCTGGTGGCGGCGGCAGCCTGCGTCCTGGACTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| CDS-3UTR CAA 90 bp | GCTCAGTCTCAGCTGTGGGGAGACACTGGAGTCCAGGACGCAGGCTGCCGCCGCAGAATTTCCTCTGCCTaGGCTCCGCGGACTGTGCAG | + |
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Preference number: 5 (lower is better) Translates to: AQSQLWGDTGVQDAGCRRRISSA*APRTVQ Trigger: CTGCACAGTCCGCGGAGCCAAGGCAGAGGAAATTCT...GCGGCGGCAGCCTGCGTCCTGGACTCCAGTGTCTCCCCACAGCTGAGACTGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| CDS-3UTR CAA 90 bp | CAGCCCACCCACAGGGCACTCAATGCTCAGTCTCAGCTGTGGGGAGACACTGGAACAGTGTATCTAGCTTaGGAGAACACCGGGGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: QPTHRALNAQSQLWGDTGTVYLA*ENTGVW Trigger: CCAGACCCCGGTGTTCTCCAAAGCTAGATACACTGT...TCCAGTGTCTCCCCACAGCTGAGACTGAGCATTGAGTGCCCTGTGGGTGGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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| CDS-3UTR CAA 90 bp | ATTCTCATCGAGGCTTTCTTTAAGTGCTTGTGGTCCCAGGATCTGAATGAGGCCCCTGTTCTGCGCTTCTaGTCTGCGATGCTGAACCCT | + |
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Preference number: 5 (lower is better) Translates to: ILIEAFFKCLWSQDLNEAPVLRF*SAMLNP Trigger: AGGGTTCAGCATCGCAGACAAGAAGCGCAGAACAGG...GGCCTCATTCAGATCCTGGGACCACAAGCACTTAAAGAAAGCCTCGATGAGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102536.11 |
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