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Pregenerated sensors for RPL10A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037805

Ensembl transcript IDs: ENSMUST00000129935.8, ENSMUST00000233895.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGCGTGGGGTGGACTTGAGCCCGGAGCTCTGGGCAACACTAGCCTaGCTTCTCAGGCTAGGCGGCGGGCTCGGCCGAGGCCTCCCCACG +
Preference number: 1 (lower is better)
Translates to: GRGVDLSPELWATLA*LLRLGGGLGRGLPT
Trigger: CGTGGGGAGGCCTCGGCCGAGCCCGCCGCCTAGCCTGAGAAGCCAGGCTAGTGTTGCCCAGAGCTCCGGGCTCAAGTCCACCCCACGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR GCA 90 bp CCTGCAGCAGGGCTCCTGAACTACCCTGGCACGTCAGTGTCCCCGTaGCCGCCTAGGGCGCGGCCAGGCCACACGGGAACACTGAGGGCT +
Preference number: 1 (lower is better)
Translates to: PAAGLLNYPGTSVSP*PPRARPGHTGTLRA
Trigger: AGCCCTCAGTGTTCCCGTGTGGCCTGGCCGCGCCCTAGGCGGGCACGGGGACACTGACGTGCCAGGGTAGTTCAGGAGCCCTGCTGCAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR-3UTR GCA 90 bp TTGGGGCGTGGGGTGGACTTGAGCCCGGAGCTCTGGGCAACACTAGCCTGGCTTGGGGTCCGTCCAGCCTaGCTGCCTGCAGCAGGGCTC +
Preference number: 2 (lower is better)
Translates to: LGRGVDLSPELWATLAWLGVRPA*LPAAGL
Trigger: GAGCCCTGCTGCAGGCAGGCAGGCTGGACGGACCCC...AAGCCAGGCTAGTGTTGCCCAGAGCTCCGGGCTCAAGTCCACCCCACGCCCCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR-3UTR GCA 90 bp TTGGGGCGTGGGGTGGACTTGAGCCCGGAGCTCTGGGCAACACTAGCCTGGCTTTCCAGCCTGCCTGCCTaGAGCAGGGCTCCTGAACTA +
Preference number: 2 (lower is better)
Translates to: LGRGVDLSPELWATLAWLSSLPA*SRAPEL
Trigger: TAGTTCAGGAGCCCTGCTGCAGGCAGGCAGGCTGGA...AAGCCAGGCTAGTGTTGCCCAGAGCTCCGGGCTCAAGTCCACCCCACGCCCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR-3UTR CCA 90 bp TTGGGGCGTGGGGTGGACTTGAGCCCGGAGCTCTGGGCAACACTAGCCTGGCTTGCTCCTGAACTACCCTaGCACGTCAGTGTCCCCGTG +
Preference number: 2 (lower is better)
Translates to: LGRGVDLSPELWATLAWLAPELP*HVSVPV
Trigger: CACGGGGACACTGACGTGCCAGGGTAGTTCAGGAGC...AAGCCAGGCTAGTGTTGCCCAGAGCTCCGGGCTCAAGTCCACCCCACGCCCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR-3UTR CCA 90 bp AGTGGCAGCAGTGAGGTTTATTGGAGCATCCTAATACAGACGCTGGGGCTTGCCCGAGAACTTGGGGCGTaGGGTGGACTTGAGCCCGGA +
Preference number: 2 (lower is better)
Translates to: SGSSEVYWSILIQTLGLARELGA*GGLEPG
Trigger: TCCGGGCTCAAGTCCACCCCACGCCCCAAGTTCTCG...GGCAAGCCCCAGCGTCTGTATTAGGATGCTCCAATAAACCTCACTGCTGCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR-3UTR TCA 90 bp AGTGGCAGCAGTGAGGTTTATTGGAGCATCCTAATACAGACGCTGGGGCTTGCCTCTTCATCTGGAACTTaGTTGTCGATTTCACCTCAT +
Preference number: 2 (lower is better)
Translates to: SGSSEVYWSILIQTLGLASSSGT*LSISPH
Trigger: ATGAGGTGAAATCGACAATCAAGTTCCAGATGAAGA...GGCAAGCCCCAGCGTCTGTATTAGGATGCTCCAATAAACCTCACTGCTGCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR CCA 72 bp GTGGACTTGAGCCCGGAGCTCTGGGCAACACTAGCCTaGCTTCTCAGGCTAGGCGGCGGGCTCGGCCGAGGC +
Preference number: 3 (lower is better)
Translates to: VDLSPELWATLA*LLRLGGGLGRG
Trigger: GCCTCGGCCGAGCCCGCCGCCTAGCCTGAGAAGCCAGGCTAGTGTTGCCCAGAGCTCCGGGCTCAAGTCCAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR GCA 72 bp AAGACCCAGGGTGGGGGTCCGTCCAGCCTGCCTGCCTaGAGCAGGGCTCCTGAACTACCCTGGCACGTCAGT +
Preference number: 3 (lower is better)
Translates to: KTQGGGPSSLPA*SRAPELPWHVS
Trigger: ACTGACGTGCCAGGGTAGTTCAGGAGCCCTGCTGCAGGCAGGCAGGCTGGACGGACCCCCACCCTGGGTCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
3UTR-3UTR CAA 90 bp AGTGGCAGCAGTGAGGTTTATTGGAGCATCCTAATACAGACGCTGGGGCTTGCCGGGCGTGGGGTGGACTaGAGCCCGGAGCTCTGGGCA +
Preference number: 3 (lower is better)
Translates to: SGSSEVYWSILIQTLGLAGRGVD*SPELWA
Trigger: TGCCCAGAGCTCCGGGCTCAAGTCCACCCCACGCCC...GGCAAGCCCCAGCGTCTGTATTAGGATGCTCCAATAAACCTCACTGCTGCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
CDS-3UTR TCA 90 bp TTGGGGCGTGGGGTGGACTTGAGCCCGGAGCTCTGGGCAACACTAGCCTGGCTTAGAGCGGTGCCAACCTaGCGGTGCCCGAGAAACGTT +
Preference number: 4 (lower is better)
Translates to: LGRGVDLSPELWATLAWLRAVPT*RCPRNV
Trigger: AACGTTTCTCGGGCACCGTCAGGTTGGCACCGCTCT...AAGCCAGGCTAGTGTTGCCCAGAGCTCCGGGCTCAAGTCCACCCCACGCCCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129935.8
CDS CAA 72 bp GGCCAACAGCGACGGCCAAACACAGCACCCAGCTTCTaGACCAACTTCTTGTTTTTGTTAAGCTTCTTGAGC +
Preference number: 6 (lower is better)
Translates to: GQQRRPNTAPSF*TNFLFLLSFLS
Trigger: GCTCAAGAAGCTTAACAAAAACAAGAAGTTGGTCAAGAAGCTGGGTGCTGTGTTTGGCCGTCGCTGTTGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233895.2