Pregenerated sensors for RPIA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053604Ensembl transcript IDs: ENSMUST00000066134.6
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCCACCCATGCCAGCCGTCCACTCTGGCACTGTGGACAGCTACATaGAGGTACATTAAGGCAAAGGCTCCTGGTGAGGCGTGTCCACTG | + |
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Preference number: 1 (lower is better) Translates to: THPCQPSTLALWTAT*RYIKAKAPGEACPL Trigger: CAGTGGACACGCCTCACCAGGAGCCTTTGCCTTAATGTACCTTCATGTAGCTGTCCACAGTGCCAGAGTGGACGGCTGGCATGGGTGGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR CCA 90 bp | GGATTTGACTACCCCCACCCACCCACCCATGCCAGCCGTCCACTCTaGCACTGTGGACAGCTACATGAAGGTACATTAAGGCAAAGGCTC | + |
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Preference number: 1 (lower is better) Translates to: GFDYPHPPTHASRPL*HCGQLHEGTLRQRL Trigger: GAGCCTTTGCCTTAATGTACCTTCATGTAGCTGTCCACAGTGCCAGAGTGGACGGCTGGCATGGGTGGGTGGGTGGGGGTAGTCAAATCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR GCA 90 bp | TCCAACAGCAGCAGGAGCAAAGCCAAGCCAGGATCCAAGAGAAGGTaGATTCTCGCTCACCTGGAGTTTGTACCCACGTCACTACAGCCC | + |
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Preference number: 1 (lower is better) Translates to: SNSSRSKAKPGSKRR*ILAHLEFVPTSLQP Trigger: GGGCTGTAGTGACGTGGGTACAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGCTCCTGCTGCTGTTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR GCA 90 bp | ATTCAAACAACAAAAAGTAAGTGCTTCACATCTCAGACAGTGCTGTaGACTGCCAGCAGGCGCTTCCGCTTCCACCGGGGGCTTCCAACA | + |
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Preference number: 1 (lower is better) Translates to: IQTTKSKCFTSQTVL*TASRRFRFHRGLPT Trigger: TGTTGGAAGCCCCCGGTGGAAGCGGAAGCGCCTGCTGGCAGTGCACAGCACTGTCTGAGATGTGAAGCACTTACTTTTTGTTGTTTGAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR TCA 90 bp | AGTAACGTTTATTTCAACCTTCGAACAGCACAAAGTGACAGCTTCTaGTACCAAATCATACAAGGGTCATCGGAGGAACAAAACGATATT | + |
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Preference number: 1 (lower is better) Translates to: SNVYFNLRTAQSDSF*YQIIQGSSEEQNDI Trigger: AATATCGTTTTGTTCCTCCGATGACCCTTGTATGATTTGGTATCAGAAGCTGTCACTTTGTGCTGTTCGAAGGTTGAAATAAACGTTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR-3UTR TCA 90 bp | TCCGCTTCCACCGGGGGCTTCCAACAGCAGCAGGAGCAAAGCCAAGCCAGGATCCTGTGGACAGCTACATaGAGGTACATTAAGGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: SASTGGFQQQQEQSQARILWTAT*RYIKAK Trigger: CTTTGCCTTAATGTACCTTCATGTAGCTGTCCACAG...GATCCTGGCTTGGCTTTGCTCCTGCTGCTGTTGGAAGCCCCCGGTGGAAGCGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR-3UTR GCA 90 bp | AGCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGAGGCGTGTCCACTGTaGCTGGGCTGGAGACTCAAG | + |
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Preference number: 2 (lower is better) Translates to: SKAKPGSKRRCILAHLEFEACPL*LGWRLK Trigger: CTTGAGTCTCCAGCCCAGGCACAGTGGACACGCCTC...AAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR CCA 72 bp | AAGGCTCCTGGTGAGGCGTGTCCACTGTGCCTGGGCTaGAGACTCAAGGTGAGGACCCTGCTCCTCTCAGGG | + |
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Preference number: 3 (lower is better) Translates to: KAPGEACPLCLG*RLKVRTLLLSG Trigger: CCCTGAGAGGAGCAGGGTCCTCACCTTGAGTCTCCAGCCCAGGCACAGTGGACACGCCTCACCAGGAGCCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR GCA 72 bp | ATTAAGGCAAAGGCTCCTGGTGAGGCGTGTCCACTGTaGCTGGGCTGGAGACTCAAGGTGAGGACCCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: IKAKAPGEACPL*LGWRLKVRTLL Trigger: GAGCAGGGTCCTCACCTTGAGTCTCCAGCCCAGGCACAGTGGACACGCCTCACCAGGAGCCTTTGCCTTAAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR TCA 72 bp | TGCCAGCCGTCCACTCTGGCACTGTGGACAGCTACATaGAGGTACATTAAGGCAAAGGCTCCTGGTGAGGCG | + |
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Preference number: 3 (lower is better) Translates to: CQPSTLALWTAT*RYIKAKAPGEA Trigger: CGCCTCACCAGGAGCCTTTGCCTTAATGTACCTTCATGTAGCTGTCCACAGTGCCAGAGTGGACGGCTGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR GCA 72 bp | ACAAAAAGTAAGTGCTTCACATCTCAGACAGTGCTGTaGACTGCCAGCAGGCGCTTCCGCTTCCACCGGGGG | + |
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Preference number: 3 (lower is better) Translates to: TKSKCFTSQTVL*TASRRFRFHRG Trigger: CCCCCGGTGGAAGCGGAAGCGCCTGCTGGCAGTGCACAGCACTGTCTGAGATGTGAAGCACTTACTTTTTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR-3UTR CAA 90 bp | AGCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTTTCATAAGACTGGATTaGACTACCCCCACCCACCCA | + |
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Preference number: 3 (lower is better) Translates to: SKAKPGSKRRCILAHLEFFIRLD*TTPTHP Trigger: TGGGTGGGTGGGGGTAGTCAAATCCAGTCTTATGAA...AAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR GCA 72 bp | CACCTGGAGTTTGTACCCACGTCACTACAGCCCCGCTaGTCCATTCACAATTCCCTACACCTGATCTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: HLEFVPTSLQPR*SIHNSLHLILK Trigger: TTTTAAGATCAGGTGTAGGGAATTGTGAATGGAGCAGCGGGGCTGTAGTGACGTGGGTACAAACTCCAGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| 3UTR TCA 72 bp | TATTTCAACCTTCGAACAGCACAAAGTGACAGCTTCTaGTACCAAATCATACAAGGGTCATCGGAGGAACAA | + |
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Preference number: 3 (lower is better) Translates to: YFNLRTAQSDSF*YQIIQGSSEEQ Trigger: TTGTTCCTCCGATGACCCTTGTATGATTTGGTATCAGAAGCTGTCACTTTGTGCTGTTCGAAGGTTGAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR GCA 90 bp | TGCCAGCAGGCGCTTCCGCTTCCACCGGGGGCTTCCAACAGCAGCAGGAGCAAAGCACGCCCCGGCAACTaGACGTGGGAACCCGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: CQQALPLPPGASNSSRSKARPGN*TWEPER Trigger: CCTCTCGGGTTCCCACGTGCAGTTGCCGGGGCGTGC...TTTGCTCCTGCTGCTGTTGGAAGCCCCCGGTGGAAGCGGAAGCGCCTGCTGGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR TCA 90 bp | GCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGGCCCGTAGAGGGTGCTaGAGGGCCCGGGGCGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: AKPSQDPREGAFSLTWSLARRGC*RARGAA Trigger: TGCAGCGCCCCGGGCCCTTCAGCACCCTCTACGGGC...CAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CCA 90 bp | GCAAAGGCTCCTGGTGAGGCGTGTCCACTGTGCCTGGGCTGGAGACTCAAGGTGCACAGCCCGGCTCACTaGGACGTAGGCCATTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: AKAPGEACPLCLGWRLKVHSPAH*DVGHWD Trigger: ATCCCAATGGCCTACGTCCCAGTGAGCCGGGCTGTG...CACCTTGAGTCTCCAGCCCAGGCACAGTGGACACGCCTCACCAGGAGCCTTTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CCA 90 bp | GCAAAGGCTCCTGGTGAGGCGTGTCCACTGTGCCTGGGCTGGAGACTCAAGGTGTCACCCCCAAACTTCTaGGCCACAGCCCGGCTCACT | + |
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Preference number: 4 (lower is better) Translates to: AKAPGEACPLCLGWRLKVSPPNF*ATARLT Trigger: AGTGAGCCGGGCTGTGGCCCAGAAGTTTGGGGGTGA...CACCTTGAGTCTCCAGCCCAGGCACAGTGGACACGCCTCACCAGGAGCCTTTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CCA 90 bp | GCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGTTCTCCACCGCCGTGTaGCTCGCCAGCTTCTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: AKPSQDPREGAFSLTWSLFSTAV*LASFLA Trigger: GGCTAAGAAGCTGGCGAGCCACACGGCGGTGGAGAA...CAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR TCA 90 bp | GCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGCTCCCGCACGTTCACTaGGCCATCCTGCATCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: AKPSQDPREGAFSLTWSLLPHVH*AILHPK Trigger: TTTGGGATGCAGGATGGCTCAGTGAACGTGCGGGAG...CAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR GCA 90 bp | AGCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTCGTCACCACTGGCCCTaGCTTGTTGACAGCCATTCG | + |
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Preference number: 4 (lower is better) Translates to: SKAKPGSKRRCILAHLEFRHHWP*LVDSHS Trigger: CGAATGGCTGTCAACAAGGCAGGGCCAGTGGTGACG...AAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CCA 90 bp | GCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGGTTATCCGTCACCACTaGCCCTGCCTTGTTGACAGC | + |
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Preference number: 4 (lower is better) Translates to: AKPSQDPREGAFSLTWSLVIRHH*PCLVDS Trigger: GCTGTCAACAAGGCAGGGCCAGTGGTGACGGATAAC...CAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR TCA 90 bp | CAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGTCTGGCCCTGCCTTGTTaGCAGCCATTCGAAGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: QSQARIQEKVHSRSPGVCLALPC*QPFEVP Trigger: TGGAACTTCGAATGGCTGTCAACAAGGCAGGGCCAG...ACAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR GCA 90 bp | TCCGCTTCCACCGGGGGCTTCCAACAGCAGCAGGAGCAAAGCCAAGCCAGGATCAGGTCCAGATTCTCTTaGTTCACTCTTTCAGCTATT | + |
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Preference number: 4 (lower is better) Translates to: SASTGGFQQQQEQSQARIRSRFS*FTLSAI Trigger: AATAGCTGAAAGAGTGAAGCAAGAGAATCTGGACCT...GATCCTGGCTTGGCTTTGCTCCTGCTGCTGTTGGAAGCCCCCGGTGGAAGCGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR TCA 90 bp | AGCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTCGTAGGCCATTGGGATaGCTTCAATGGGAATCCCCT | + |
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Preference number: 4 (lower is better) Translates to: SKAKPGSKRRCILAHLEFRRPLG*LQWESP Trigger: AGGGGATTCCCATTGAAGTCATCCCAATGGCCTACG...AAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR TCA 90 bp | AGCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGTTGATCCAGGTCACTaGGGGTTAAGCCATACTGCA | + |
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Preference number: 4 (lower is better) Translates to: SKAKPGSKRRCILAHLEFVDPGH*GLSHTA Trigger: TGCAGTATGGCTTAACCCTCAGTGACCTGGATCAAC...AAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CCA 90 bp | CAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGTTGGGACGTAGGCCATTaGGATGACTTCAATGGGAAT | + |
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Preference number: 4 (lower is better) Translates to: QSQARIQEKVHSRSPGVCWDVGH*DDFNGN Trigger: ATTCCCATTGAAGTCATCCCAATGGCCTACGTCCCA...ACAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CCA 90 bp | CAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGTTGTGTCCACCACGCCTaGAGTCATTTTGATAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: QSQARIQEKVHSRSPGVCCVHHA*SHFDSC Trigger: ACAGCTATCAAAATGACTCCAGGCGTGGTGGACACA...ACAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR TCA 90 bp | ACAAGGTTTCCCATAAGGCATCAGGAGACCTGCACCAGCTTAGAAAAACGTTCTATGTGGGGATGCAGATaGGGTCCAGATTCTCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: TRFPIRHQETCTSLEKRSMWGCR*GPDSLA Trigger: AGCAAGAGAATCTGGACCTCATCTGCATCCCCACAT...AGAACGTTTTTCTAAGCTGGTGCAGGTCTCCTGATGCCTTATGGGAAACCTTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR GCA 90 bp | CTTCAGAAGGTTAACCAGCAGGTCCAGTCAAAGCTTTCAGAGACAGTCCTGATCCTTTCAGCTATTCGCTaGACAGCGTGGACAATTGTA | + |
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Preference number: 4 (lower is better) Translates to: LQKVNQQVQSKLSETVLILSAIR*TAWTIV Trigger: TACAATTGTCCACGCTGTGCAGCGAATAGCTGAAAG...GATCAGGACTGTCTCTGAAAGCTTTGACTGGACCTGCTGGTTAACCTTCTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS GCA 90 bp | GCCGCCCGCGCTCGAGCCTCCCTTGTCGCCGCGGGTCTCCGAATGTaGACGCCCCGGCAACTGCACGTGGGAACCCGAGAGGCCCCAGTT | + |
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Preference number: 5 (lower is better) Translates to: AARARASLVAAGLRM*TPRQLHVGTREAPV Trigger: AACTGGGGCCTCTCGGGTTCCCACGTGCAGTTGCCGGGGCGTGCACATTCGGAGACCCGCGGCGACAAGGGAGGCTCGAGCGCGGGCGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CAA 90 bp | TGCCAGCAGGCGCTTCCGCTTCCACCGGGGGCTTCCAACAGCAGCAGGAGCAAAACTGGCCCTGCCTTGTaGACAGCCATTCGAAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: CQQALPLPPGASNSSRSKTGPAL*TAIRSS Trigger: GGAACTTCGAATGGCTGTCAACAAGGCAGGGCCAGT...TTTGCTCCTGCTGCTGTTGGAAGCCCCCGGTGGAAGCGGAAGCGCCTGCTGGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CAA 90 bp | TCCGCTTCCACCGGGGGCTTCCAACAGCAGCAGGAGCAAAGCCAAGCCAGGATCCAGCCTCCTCCACCCTaGATGAGATTGAGCTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: SASTGGFQQQQEQSQARIQPPPP*MRLSSA Trigger: TGCTGAGCTCAATCTCATCAAGGGTGGAGGAGGCTG...GATCCTGGCTTGGCTTTGCTCCTGCTGCTGTTGGAAGCCCCCGGTGGAAGCGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CAA 90 bp | TCCGCTTCCACCGGGGGCTTCCAACAGCAGCAGGAGCAAAGCCAAGCCAGGATCACCACTGGCCCTGCCTaGTTGACAGCCATTCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: SASTGGFQQQQEQSQARITTGPA*LTAIRS Trigger: ACTTCGAATGGCTGTCAACAAGGCAGGGCCAGTGGT...GATCCTGGCTTGGCTTTGCTCCTGCTGCTGTTGGAAGCCCCCGGTGGAAGCGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CAA 90 bp | TCCGCTTCCACCGGGGGCTTCCAACAGCAGCAGGAGCAAAGCCAAGCCAGGATCACGCCTGGAGTCATTTaGATAGCTGTGTTCACTTCA | + |
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Preference number: 5 (lower is better) Translates to: SASTGGFQQQQEQSQARITPGVI*IAVFTS Trigger: TGAAGTGAACACAGCTATCAAAATGACTCCAGGCGT...GATCCTGGCTTGGCTTTGCTCCTGCTGCTGTTGGAAGCCCCCGGTGGAAGCGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CAA 90 bp | AGCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGTCAATCTCTGGGTGTaGATCCAGGTCACTGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: SKAKPGSKRRCILAHLEFVNLWV*IQVTEG Trigger: ACCCTCAGTGACCTGGATCAACACCCAGAGATTGAC...AAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CAA 90 bp | GCAAAGCCAAGCCAGGATCCAAGAGAAGGTGCATTCTCGCTCACCTGGAGTTTGGAGGTCCAGATTCTCTaGCTTCACTCTTTCAGCTAT | + |
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Preference number: 5 (lower is better) Translates to: AKPSQDPREGAFSLTWSLEVQIL*LHSFSY Trigger: ATAGCTGAAAGAGTGAAGCAAGAGAATCTGGACCTC...CAAACTCCAGGTGAGCGAGAATGCACCTTCTCTTGGATCCTGGCTTGGCTTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS-3UTR CAA 90 bp | CTTCAGAAGGTTAACCAGCAGGTCCAGTCAAAGCTTTCAGAGACAGTCCTGATCCCACCCTTGATGAGATaGAGCTCAGCATCCACTTCG | + |
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Preference number: 5 (lower is better) Translates to: LQKVNQQVQSKLSETVLIPPLMR*SSASTS Trigger: CGAAGTGGATGCTGAGCTCAATCTCATCAAGGGTGG...GATCAGGACTGTCTCTGAAAGCTTTGACTGGACCTGCTGGTTAACCTTCTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS GCA 72 bp | TCGCCGCGGGTCTCCGAATGTGCACGCCCCGGCAACTaGACGTGGGAACCCGAGAGGCCCCAGTTGTTCCCG | + |
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Preference number: 6 (lower is better) Translates to: SPRVSECARPGN*TWEPERPQLFP Trigger: CGGGAACAACTGGGGCCTCTCGGGTTCCCACGTGCAGTTGCCGGGGCGTGCACATTCGGAGACCCGCGGCGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS GCA 72 bp | GCTCGAGCCTCCCTTGTCGCCGCGGGTCTCCGAATGTaGACGCCCCGGCAACTGCACGTGGGAACCCGAGAG | + |
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Preference number: 6 (lower is better) Translates to: ARASLVAAGLRM*TPRQLHVGTRE Trigger: CTCTCGGGTTCCCACGTGCAGTTGCCGGGGCGTGCACATTCGGAGACCCGCGGCGACAAGGGAGGCTCGAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS CCA 72 bp | CTCACCCCCAAACTTCTGGGCCACAGCCCGGCTCACTaGGACGTAGGCCATTGGGATGACTTCAATGGGAAT | + |
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Preference number: 6 (lower is better) Translates to: LTPKLLGHSPAH*DVGHWDDFNGN Trigger: ATTCCCATTGAAGTCATCCCAATGGCCTACGTCCCAGTGAGCCGGGCTGTGGCCCAGAAGTTTGGGGGTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS CCA 72 bp | AGGGTTAAGCCATACTGCAAGATAAGCTGCCTGGCCTaGAAAGATGTGGGGATGCAGATGAGGTCCAGATTC | + |
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Preference number: 6 (lower is better) Translates to: RVKPYCKISCLA*KDVGMQMRSRF Trigger: GAATCTGGACCTCATCTGCATCCCCACATCTTTCCAGGCCAGGCAGCTTATCTTGCAGTATGGCTTAACCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS CAA 72 bp | GAAAGATGTGGGGATGCAGATGAGGTCCAGATTCTCTaGCTTCACTCTTTCAGCTATTCGCTGCACAGCGTG | + |
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Preference number: 6 (lower is better) Translates to: ERCGDADEVQIL*LHSFSYSLHSV Trigger: CACGCTGTGCAGCGAATAGCTGAAAGAGTGAAGCAAGAGAATCTGGACCTCATCTGCATCCCCACATCTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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| CDS GCA 72 bp | ATCTTTCCTGAAATCAGCAATCACAATGAAACGACTTaGATAACCAGCCACGATCTTCTCCTGGGTCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: IFPEISNHNETT*ITSHDLLLGQA Trigger: TGCCTGACCCAGGAGAAGATCGTGGCTGGTTATGCAAGTCGTTTCATTGTGATTGCTGATTTCAGGAAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066134.6 |
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