RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPH3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029608

Ensembl transcript IDs: ENSMUST00000079204.9, ENSMUST00000200792.2, ENSMUST00000202326.4, ENSMUST00000202406.4

Found 320 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTGGAGGGGTGGGTATGTGTGTCACGGAGGGCATCAGGGCGCTGTaGGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCAGCATCAGGC +
Preference number: 1 (lower is better)
Translates to: CGGVGMCVTEGIRAL*AGCIPSPEPKPASG
Trigger: GCCTGATGCTGGTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCGTGACACACATACCCACCCCTCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 90 bp AAGGCAGTGGGCATGGTGCATGCACCGGGGGACTTGTGTTCTATGTaGAGGGGTGGGTATGTGTGTCACGGAGGGCATCAGGGCGCTGTG +
Preference number: 1 (lower is better)
Translates to: KAVGMVHAPGDLCSM*RGGYVCHGGHQGAV
Trigger: CACAGCGCCCTGATGCCCTCCGTGACACACATACCCACCCCTCCACATAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR GCA 90 bp GGTCCAGGAGCAAGTCCCCTCATACACAGAGCTCCGTGCCACCTGTaGCCATTTGGGGAGCCAGGGATGAGAAAGAGAGATCCTGTTTCT +
Preference number: 1 (lower is better)
Translates to: GPGASPLIHRAPCHL*PFGEPGMRKRDPVS
Trigger: AGAAACAGGATCTCTCTTTCTCATCCCTGGCTCCCCAAATGGGCACAGGTGGCACGGAGCTCTGTGTATGAGGGGACTTGCTCCTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 90 bp GAGGGTCCTTTGCTCTTTGCAAAGAGTAGAGGAAGGATAGAAGCATaGGGTCCAGGAGCAAGTCCCCTCATACACAGAGCTCCGTGCCAC +
Preference number: 1 (lower is better)
Translates to: EGPLLFAKSRGRIEA*GPGASPLIHRAPCH
Trigger: GTGGCACGGAGCTCTGTGTATGAGGGGACTTGCTCCTGGACCCCATGCTTCTATCCTTCCTCTACTCTTTGCAAAGAGCAAAGGACCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 90 bp GTAAATCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTaGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGAT +
Preference number: 1 (lower is better)
Translates to: VNLFVNVSPHPLPNL*GPERAHIQTLKPRD
Trigger: ATCTCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGATTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR CCA 90 bp ACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTGAGTaGAAGTTTGGGGAGAGGGTCCTTTGCTCTTTGCAAAGAGTAGAG +
Preference number: 1 (lower is better)
Translates to: TGKRVEGRQNRGGSE*KFGERVLCSLQRVE
Trigger: CTCTACTCTTTGCAAAGAGCAAAGGACCCTCTCCCCAAACTTCCACTCAGAGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 90 bp TCAAGAGATGTTGGAAGGAACAAGCAAGACTGTGAGACTTGGGAATaGGAGGGTTTTAGTCTTGGTCTGCCTGACGCTATAGGGAGTAGT +
Preference number: 1 (lower is better)
Translates to: SRDVGRNKQDCETWE*EGFSLGLPDAIGSS
Trigger: ACTACTCCCTATAGCGTCAGGCAGACCAAGACTAAAACCCTCCCATTCCCAAGTCTCACAGTCTTGCTTGTTCCTTCCAACATCTCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 90 bp ATATTCCTACTTTATTTTTGGCTACATCAGTGCAAAGAAAGGCAGTaGGCATGGTGCATGCACCGGGGGACTTGTGTTCTATGTGGAGGG +
Preference number: 1 (lower is better)
Translates to: IFLLYFWLHQCKERQ*AWCMHRGTCVLCGG
Trigger: CCCTCCACATAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCTTTGCACTGATGTAGCCAAAAATAAAGTAGGAATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR TCA 90 bp GACCAAGAGAGTTCTGACCTAATTAAAGCTCTAAATACGGTTATTTaGTCACCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAG +
Preference number: 1 (lower is better)
Translates to: DQESSDLIKALNTVI*SPPGITGKRVEGRQ
Trigger: CTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGGTGATCAAATAACCGTATTTAGAGCTTTAATTAGGTCAGAACTCTCTTGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp TGCCATGCACCCAGGCTGTGCCAGCTGCGGGCCCCAGGCTCAAAGATAGCCAGCTGGCAGGGGAGGCTCTaGAAGGGGAGAGCGGCTGGG +
Preference number: 2 (lower is better)
Translates to: CHAPRLCQLRAPGSKIASWQGRL*KGRAAG
Trigger: CCCAGCCGCTCTCCCCTTTCAGAGCCTCCCCTGCCA...GCTGGCTATCTTTGAGCCTGGGGCCCGCAGCTGGCACAGCCTGGGTGCATGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR GCA 90 bp GTGTGTCACGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGACCAGGCTGTGCCAGCTaGGGGCCCCAGGCTCAAAGA +
Preference number: 2 (lower is better)
Translates to: VCHGGHQGAVSRLHSESRPGCAS*GPQAQR
Trigger: TCTTTGAGCCTGGGGCCCGCAGCTGGCACAGCCTGG...TCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCGTGACACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp CGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCAGCTTCATCCAGCTTaGGAGGTTGCTGGCCAGGCT +
Preference number: 2 (lower is better)
Translates to: RRASGRCEQAAFRVQSQNQLHPA*EVAGQA
Trigger: AGCCTGGCCAGCAACCTCCCAAGCTGGATGAAGCTG...GTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGTGGCAGGGGAGGCTCTaGAAGGGGAGAGCGGCTGGG +
Preference number: 2 (lower is better)
Translates to: SLCKCLPTPTTQPLGTREWQGRL*KGRAAG
Trigger: CCCAGCCGCTCTCCCCTTTCAGAGCCTCCCCTGCCA...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR-3UTR GCA 90 bp CCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTCCAGGCTGTGCCAGCTaGGGGCCCCAGGCTCAAAGA +
Preference number: 2 (lower is better)
Translates to: PPGITGKRVEGRQNRGGSPGCAS*GPQAQR
Trigger: TCTTTGAGCCTGGGGCCCGCAGCTGGCACAGCCTGG...AGAGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp CACCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTGGTTGCTGGCCAGGCTaGCAAGGGGCACATGGGGAG +
Preference number: 2 (lower is better)
Translates to: HHQESRGREWKVDRTEVAGCWPG*QGAHGE
Trigger: CTCCCCATGTGCCCCTTGCCAGCCTGGCCAGCAACC...AGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTGGCAGGGGAGGCTCTaGAAGGGGAGAGCGGCTGGG +
Preference number: 2 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPWQGRL*KGRAAG
Trigger: CCCAGCCGCTCTCCCCTTTCAGAGCCTCCCCTGCCA...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp GCTTGGGCGACTCAGCCAGCATGCTTTCTCCTAAAGGTGACCATGACAGGGAAGCAATGGACAGCTTCCTaGAAGGGTGGGGGAGGGGCA +
Preference number: 2 (lower is better)
Translates to: AWATQPACFLLKVTMTGKQWTAS*KGGGGA
Trigger: TGCCCCTCCCCCACCCTTTCAGGAAGCTGTCCATTG...CTTCCCTGTCATGGTCACCTTTAGGAGAAAGCATGCTGGCTGAGTCGCCCAAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp TCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGACCGTGAGGAAGATGGCCTaGCTCCAGCCTCAGGTGTAC +
Preference number: 2 (lower is better)
Translates to: SPKGDHDREVGKWAEHQTVRKMA*LQPQVY
Trigger: GTACACCTGAGGCTGGAGTCAGGCCATCTTCCTCAC...GGTCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp TCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGACCTTGCATCCCCCACTGTaGAGGTGGGAGAAGAGGGGA +
Preference number: 2 (lower is better)
Translates to: SPKGDHDREVGKWAEHQTLHPPL*RWEKRG
Trigger: TCCCCTCTTCTCCCACCTCCACAGTGGGGGATGCAA...GGTCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CAA 90 bp TCAGTGCAAAGAAAGGCAGTGGGCATGGTGCATGCACCGGGGGACTaGTGTTCTATGTGGAGGGGTGGGTATGTGTGTCACGGAGGGCAT +
Preference number: 2 (lower is better)
Translates to: SVQRKAVGMVHAPGD*CSMWRGGYVCHGGH
Trigger: ATGCCCTCCGTGACACACATACCCACCCCTCCACATAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCTTTGCACTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp ACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAATTCTGTAGCAGGACCTaGAGTGGGGGAGACATGAAA +
Preference number: 2 (lower is better)
Translates to: TPTTQPLGTREGSHPDPEFCSRT*SGGDMK
Trigger: TTTCATGTCTCCCCCACTTCAGGTCCTGCTACAGAA...TTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR-3UTR GCA 90 bp AGATGTGGGGCCCAGCTTCATCCAGCTTGGGAGGTTGCTGGCCAGGCTGGCAAGTTTTTCTTCCTGGAGTaGTTTGGATGGACAGAGGCA +
Preference number: 2 (lower is better)
Translates to: RCGAQLHPAWEVAGQAGKFFFLE*FGWTEA
Trigger: TGCCTCTGTCCATCCAAAGCACTCCAGGAAGAAAAA...CTTGCCAGCCTGGCCAGCAACCTCCCAAGCTGGATGAAGCTGGGCCCCACATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR GCA 90 bp ATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCACGAGTTACTGAGAGCAGGGGGGAGGCTCTGCCTTaGATCCCCCACTGTGGAGGT +
Preference number: 2 (lower is better)
Translates to: ISGKHKSPSGTARVTESRGEALP*IPHCGG
Trigger: ACCTCCACAGTGGGGGATGCAAGGCAGAGCCTCCCC...CCTGCTCTCAGTAACTCGTGCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAAT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR GCA 90 bp CACCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTTCTATAGTGCTGCCATaGACCCAGGCTGTGCCAGCT +
Preference number: 2 (lower is better)
Translates to: HHQESRGREWKVDRTEVASIVLP*TQAVPA
Trigger: AGCTGGCACAGCCTGGGTGCATGGCAGCACTATAGA...AGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR GCA 90 bp GGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCTTACTGAGAGCAGGGTaGATCTCAAGAGATGTTGGA +
Preference number: 2 (lower is better)
Translates to: GGHQGAVSRLHSESRAKTLLRAG*ISRDVG
Trigger: TCCAACATCTCTTGAGATGCACCCTGCTCTCAGTAA...GGTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp CGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCAAGACTGTGAGACTTaGGAATGGGAGGGTTTTAGT +
Preference number: 2 (lower is better)
Translates to: RRASGRCEQAAFRVQSQNQDCET*EWEGFS
Trigger: ACTAAAACCCTCCCATTCCCAAGTCTCACAGTCTTG...GTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp CAGTGCAAAGAAAGGCAGTGGGCATGGTGCATGCACCGGGGGACTTGTGTTCTAGAACAAGCAAGACTGTaGGACTTGGGAATGGGAGGG +
Preference number: 2 (lower is better)
Translates to: QCKERQWAWCMHRGTCVLEQARL*DLGMGG
Trigger: CCCTCCCATTCCCAAGTCTCACAGTCTTGCTTGTTC...TAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCTTTGCACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp CAGTGCAAAGAAAGGCAGTGGGCATGGTGCATGCACCGGGGGACTTGTGTTCTACTGGAGTGCTTTGGATaGACAGAGGCAGCCTCAATG +
Preference number: 2 (lower is better)
Translates to: QCKERQWAWCMHRGTCVLLECFG*TEAASM
Trigger: CATTGAGGCTGCCTCTGTCCATCCAAAGCACTCCAG...TAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCTTTGCACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp GAGTTACTGAGAGCAGGGTGCATCTCAAGAGATGTTGGAAGGAACAAGCAAGACAGCTTCCTGAAAGGGTaGGGGAGGGGCAGGCCCTCT +
Preference number: 2 (lower is better)
Translates to: ELLRAGCISRDVGRNKQDSFLKG*GRGRPS
Trigger: AGAGGGCCTGCCCCTCCCCCACCCTTTCAGGAAGCT...GTCTTGCTTGTTCCTTCCAACATCTCTTGAGATGCACCCTGCTCTCAGTAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp CTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCGGTTGCTGGCCAGGCTaGCAAGGGGCACATGGGGAG +
Preference number: 2 (lower is better)
Translates to: LILEESHFRETQESLRNSGCWPG*QGAHGE
Trigger: CTCCCCATGTGCCCCTTGCCAGCCTGGCCAGCAACC...GCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp CAGTGCAAAGAAAGGCAGTGGGCATGGTGCATGCACCGGGGGACTTGTGTTCTAGAAGTGGGGGAGACATaGAAGGTTCATAGTTGGCAG +
Preference number: 2 (lower is better)
Translates to: QCKERQWAWCMHRGTCVLEVGET*KVHSWQ
Trigger: CTGCCAACTATGAACCTTTCATGTCTCCCCCACTTC...TAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCTTTGCACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp AGTAGAGGAAGGATAGAAGCATGGGGTCCAGGAGCAAGTCCCCTCATACACAGACTTCCTGGAGTGCTTTaGATGGACAGAGGCAGCCTC +
Preference number: 2 (lower is better)
Translates to: SRGRIEAWGPGASPLIHRLPGVL*MDRGSL
Trigger: GAGGCTGCCTCTGTCCATCCAAAGCACTCCAGGAAG...TCTGTGTATGAGGGGACTTGCTCCTGGACCCCATGCTTCTATCCTTCCTCTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp AGTAGAGGAAGGATAGAAGCATGGGGTCCAGGAGCAAGTCCCCTCATACACAGACCACCTGTGCCCATTTaGGGAGCCAGGGATGAGAAA +
Preference number: 2 (lower is better)
Translates to: SRGRIEAWGPGASPLIHRPPVPI*GARDEK
Trigger: TTTCTCATCCCTGGCTCCCCAAATGGGCACAGGTGG...TCTGTGTATGAGGGGACTTGCTCCTGGACCCCATGCTTCTATCCTTCCTCTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp GCTTGGGCGACTCAGCCAGCATGCTTTCTCCTAAAGGTGACCATGACAGGGAAGCCTCTGGATTTGTCATaGACCAAGAGAGTTCTGACC +
Preference number: 2 (lower is better)
Translates to: AWATQPACFLLKVTMTGKPLDLS*TKRVLT
Trigger: GGTCAGAACTCTCTTGGTCCATGACAAATCCAGAGG...CTTCCCTGTCATGGTCACCTTTAGGAGAAAGCATGCTGGCTGAGTCGCCCAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp AATCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGTTCTGTAGCAGGACCTaGAGTGGGGGAGACATGAAA +
Preference number: 2 (lower is better)
Translates to: NLFVNVSPHPLPNLWGPEFCSRT*SGGDMK
Trigger: TTTCATGTCTCCCCCACTTCAGGTCCTGCTACAGAA...CTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp ATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCACGAGTTACTGAGAGCAGGCTGGAGTGCTTTGGATaGACAGAGGCAGCCTCAATG +
Preference number: 2 (lower is better)
Translates to: ISGKHKSPSGTARVTESRLECFG*TEAASM
Trigger: CATTGAGGCTGCCTCTGTCCATCCAAAGCACTCCAG...CCTGCTCTCAGTAACTCGTGCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp TGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACTTCTGTAGCAGGACCTaGAGTGGGGGAGACATGAAA +
Preference number: 2 (lower is better)
Translates to: WTEAASMYNFCPPPGPYNFCSRT*SGGDMK
Trigger: TTTCATGTCTCCCCCACTTCAGGTCCTGCTACAGAA...GTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp GAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGCTCACATCCAGACCCTaGAGCCCAGAGATTCTTCTT +
Preference number: 2 (lower is better)
Translates to: EAASMYNFCPPPGPYNLWLTSRP*SPEILL
Trigger: AAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTGAG...CCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp TGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTCACATCCAGACCCTaGAGCCCAGAGATTCTTCTT +
Preference number: 2 (lower is better)
Translates to: WTEAASMYNFCPPPGPYNLTSRP*SPEILL
Trigger: AAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTGAG...GTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR-3UTR TCA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTGAAGTGGGGGAGACATaGAAGGTTCATAGTTGGCAG +
Preference number: 2 (lower is better)
Translates to: QCIISALLLVLTTYGFTSEVGET*KVHSWQ
Trigger: CTGCCAACTATGAACCTTTCATGTCTCCCCCACTTC...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp TCTGGATTTGTCATGGACCAAGAGAGTTCTGACCTAATTAAAGCTCTAAATACGCAGCTTCATCCAGCTTaGGAGGTTGCTGGCCAGGCT +
Preference number: 2 (lower is better)
Translates to: SGFVMDQESSDLIKALNTQLHPA*EVAGQA
Trigger: AGCCTGGCCAGCAACCTCCCAAGCTGGATGAAGCTG...CGTATTTAGAGCTTTAATTAGGTCAGAACTCTCTTGGTCCATGACAAATCCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp ATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCACGAGTTACTGAGAGCAGGCATCTCAAGAGATGTTaGAAGGAACAAGCAAGACTG +
Preference number: 2 (lower is better)
Translates to: ISGKHKSPSGTARVTESRHLKRC*KEQARL
Trigger: CAGTCTTGCTTGTTCCTTCCAACATCTCTTGAGATG...CCTGCTCTCAGTAACTCGTGCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp TCTGGATTTGTCATGGACCAAGAGAGTTCTGACCTAATTAAAGCTCTAAATACGAGAGGTGGCTCTGAGTaGAAGTTTGGGGAGAGGGTC +
Preference number: 2 (lower is better)
Translates to: SGFVMDQESSDLIKALNTRGGSE*KFGERV
Trigger: GACCCTCTCCCCAAACTTCCACTCAGAGCCACCTCT...CGTATTTAGAGCTTTAATTAGGTCAGAACTCTCTTGGTCCATGACAAATCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp TCTGGATTTGTCATGGACCAAGAGAGTTCTGACCTAATTAAAGCTCTAAATACGTCACGGGGAAGAGAGTaGAAGGTAGACAGAACAGAG +
Preference number: 2 (lower is better)
Translates to: SGFVMDQESSDLIKALNTSRGRE*KVDRTE
Trigger: CTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGA...CGTATTTAGAGCTTTAATTAGGTCAGAACTCTCTTGGTCCATGACAAATCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CCA 90 bp CTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCGCAAAACTATCAAGATaGGAAAAACCAGACTTGCCT +
Preference number: 2 (lower is better)
Translates to: LILEESHFRETQESLRNSAKLSR*EKPDLP
Trigger: AGGCAAGTCTGGTTTTTCCCATCTTGATAGTTTTGC...GCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CAA 90 bp AGGAGCAAGTCCCCTCATACACAGAGCTCCGTGCCACCTGTGCCCATTTGGGGATGGGGAGGCTCTGCCTaGCATCCCCCACTGTGGAGG +
Preference number: 3 (lower is better)
Translates to: RSKSPHTQSSVPPVPIWGWGGSA*HPPLWR
Trigger: CCTCCACAGTGGGGGATGCAAGGCAGAGCCTCCCCA...TCCCCAAATGGGCACAGGTGGCACGGAGCTCTGTGTATGAGGGGACTTGCTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CAA 90 bp GGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCGGAAGGTTAGCCACCTaGGGGCAGGCAGAGCCTGAT +
Preference number: 3 (lower is better)
Translates to: GGHQGAVSRLHSESRAKTGRLAT*GQAEPD
Trigger: ATCAGGCTCTGCCTGCCCCAAGGTGGCTAACCTTCC...GGTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CAA 90 bp GTGTGTCACGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGATCTTCCTGGAGTGCTTaGGATGGACAGAGGCAGCCT +
Preference number: 3 (lower is better)
Translates to: VCHGGHQGAVSRLHSESRSSWSA*DGQRQP
Trigger: AGGCTGCCTCTGTCCATCCAAAGCACTCCAGGAAGA...TCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCGTGACACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR TCA 72 bp GTGGGTATGTGTGTCACGGAGGGCATCAGGGCGCTGTaGGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCA +
Preference number: 3 (lower is better)
Translates to: VGMCVTEGIRAL*AGCIPSPEPKP
Trigger: TGGTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCGTGACACACATACCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR GCA 72 bp GAGATCCTGTTTCTCAGGATATCTATAGTGCTGCCATaGACCCAGGCTGTGCCAGCTGCGGGCCCCAGGCTC +
Preference number: 3 (lower is better)
Translates to: EILFLRISIVLP*TQAVPAAGPRL
Trigger: GAGCCTGGGGCCCGCAGCTGGCACAGCCTGGGTGCATGGCAGCACTATAGATATCCTGAGAAACAGGATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 72 bp GGCATGGTGCATGCACCGGGGGACTTGTGTTCTATGTaGAGGGGTGGGTATGTGTGTCACGGAGGGCATCAG +
Preference number: 3 (lower is better)
Translates to: GMVHAPGDLCSM*RGGYVCHGGHQ
Trigger: CTGATGCCCTCCGTGACACACATACCCACCCCTCCACATAGAACACAAGTCCCCCGGTGCATGCACCATGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CAA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGAATCCAGCTTGGGAGGTaGCTGGCCAGGCTGGCAAGG +
Preference number: 3 (lower is better)
Translates to: FLLKVTMTGKWASGRSIRIQLGR*LARLAR
Trigger: CCTTGCCAGCCTGGCCAGCAACCTCCCAAGCTGGAT...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CAA 90 bp CGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACAGGGTCCTTTGCTCTTaGCAAAGAGTAGAGGAAGGA +
Preference number: 3 (lower is better)
Translates to: RRASGRCEQAAFRVQSQNRVLCS*QRVEEG
Trigger: TCCTTCCTCTACTCTTTGCAAAGAGCAAAGGACCCT...GTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CAA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGAGGAAGGTTAGCCACCTaGGGGCAGGCAGAGCCTGAT +
Preference number: 3 (lower is better)
Translates to: FLLKVTMTGKWASGRSIRGRLAT*GQAEPD
Trigger: ATCAGGCTCTGCCTGCCCCAAGGTGGCTAACCTTCC...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR GCA 72 bp GCAAGTCCCCTCATACACAGAGCTCCGTGCCACCTGTaGCCATTTGGGGAGCCAGGGATGAGAAAGAGAGAT +
Preference number: 3 (lower is better)
Translates to: ASPLIHRAPCHL*PFGEPGMRKRD
Trigger: ATCTCTCTTTCTCATCCCTGGCTCCCCAAATGGGCACAGGTGGCACGGAGCTCTGTGTATGAGGGGACTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR GCA 72 bp TACATCAGTGCAAAGAAAGGCAGTGGGCATGGTGCATaGACCGGGGGACTTGTGTTCTATGTGGAGGGGTGG +
Preference number: 3 (lower is better)
Translates to: YISAKKGSGHGA*TGGLVFYVEGW
Trigger: CCACCCCTCCACATAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCTTTGCACTGATGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 72 bp TTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTaGGGACCAGAGAGGGCTCACATCCAGACCCTGAAG +
Preference number: 3 (lower is better)
Translates to: FVNVSPHPLPNL*GPERAHIQTLK
Trigger: CTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR TCA 72 bp AGGGGAGGGAGGGTGGGTGAGGAGGTACTGATAAGATaGGCAAGGAGCAAGGAGGAAGTTAGTTTTACTAGG +
Preference number: 3 (lower is better)
Translates to: RGGRVGEEVLIR*ARSKEEVSFTR
Trigger: CCTAGTAAAACTAACTTCCTCCTTGCTCCTTGCTCATCTTATCAGTACCTCCTCACCCACCCTCCCTCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR GCA 72 bp GTCCCTCAGGAACAGCACGAGTTACTGAGAGCAGGGTaGATCTCAAGAGATGTTGGAAGGAACAAGCAAGAC +
Preference number: 3 (lower is better)
Translates to: VPQEQHELLRAG*ISRDVGRNKQD
Trigger: GTCTTGCTTGTTCCTTCCAACATCTCTTGAGATGCACCCTGCTCTCAGTAACTCGTGCTGTTCCTGAGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 72 bp AGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTGAGTaGAAGTTTGGGGAGAGGGTCCTTTGCTCTTTGCAA +
Preference number: 3 (lower is better)
Translates to: RVEGRQNRGGSE*KFGERVLCSLQ
Trigger: TTGCAAAGAGCAAAGGACCCTCTCCCCAAACTTCCACTCAGAGCCACCTCTGTTCTGTCTACCTTCCACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR TCA 72 bp CTATCAAGATGGGAAAAACCAGACTTGCCTCTCATGTaGGGAAGATGGCCTGACTCCAGCCTCAGGTGTACA +
Preference number: 3 (lower is better)
Translates to: LSRWEKPDLPLM*GRWPDSSLRCT
Trigger: TGTACACCTGAGGCTGGAGTCAGGCCATCTTCCTCACATGAGAGGCAAGTCTGGTTTTTCCCATCTTGATAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR GCA 72 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTaGCCTCCTCCTGGTCCTTACAACCTATGGGTTCAC +
Preference number: 3 (lower is better)
Translates to: FGWTEAASMYNF*PPPGPYNLWVH
Trigger: GTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR CCA 72 bp GTTGGAAGGAACAAGCAAGACTGTGAGACTTGGGAATaGGAGGGTTTTAGTCTTGGTCTGCCTGACGCTATA +
Preference number: 3 (lower is better)
Translates to: VGRNKQDCETWE*EGFSLGLPDAI
Trigger: TATAGCGTCAGGCAGACCAAGACTAAAACCCTCCCATTCCCAAGTCTCACAGTCTTGCTTGTTCCTTCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CCA 72 bp AGAGATGTTGGAAGGAACAAGCAAGACTGTGAGACTTaGGAATGGGAGGGTTTTAGTCTTGGTCTGCCTGAC +
Preference number: 3 (lower is better)
Translates to: RDVGRNKQDCET*EWEGFSLGLPD
Trigger: GTCAGGCAGACCAAGACTAAAACCCTCCCATTCCCAAGTCTCACAGTCTTGCTTGTTCCTTCCAACATCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR-3UTR CAA 90 bp TCTGGATTTGTCATGGACCAAGAGAGTTCTGACCTAATTAAAGCTCTAAATACGGCTCTGAGTGGAAGTTaGGGGAGAGGGTCCTTTGCT +
Preference number: 3 (lower is better)
Translates to: SGFVMDQESSDLIKALNTALSGS*GRGSFA
Trigger: AGCAAAGGACCCTCTCCCCAAACTTCCACTCAGAGC...CGTATTTAGAGCTTTAATTAGGTCAGAACTCTCTTGGTCCATGACAAATCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR TCA 72 bp AGTTCTGACCTAATTAAAGCTCTAAATACGGTTATTTaGTCACCACCAGGAATCACGGGGAAGAGAGTGGAA +
Preference number: 3 (lower is better)
Translates to: SSDLIKALNTVI*SPPGITGKRVE
Trigger: TTCCACTCTCTTCCCCGTGATTCCTGGTGGTGATCAAATAACCGTATTTAGAGCTTTAATTAGGTCAGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCTGCTGGGCTTGGCACTaGGGCTGGGGCAGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: GGHQGAVSRLHSESRAKTCWAWH*GWGRAG
Trigger: GCCCGCCCTGCCCCAGCCCCAGTGCCAAGCCCAGCA...GGTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGTCCTGGCCCAGGAGTaGCCCTGCTGCCCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRVLAQE*PCCPQG
Trigger: CCCCTGGGGGCAGCAGGGCCACTCCTGGGCCAGGAC...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AGGAGCAAGTCCCCTCATACACAGAGCTCCGTGCCACCTGTGCCCATTTGGGGAGCTTGGCACTGGGGCTaGGGCAGGGCGGGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: RSKSPHTQSSVPPVPIWGAWHWG*GRAGCL
Trigger: CAGGCAGCCCGCCCTGCCCCAGCCCCAGTGCCAAGC...TCCCCAAATGGGCACAGGTGGCACGGAGCTCTGTGTATGAGGGGACTTGCTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp ACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAATGCTGGGCTTGGCACTaGGGCTGGGGCAGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: TPTTQPLGTREGSHPDPECWAWH*GWGRAG
Trigger: GCCCGCCCTGCCCCAGCCCCAGTGCCAAGCCCAGCA...TTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACACCGGCTGAGGAGGTaGTGGGCTTGGCACTGGGGC +
Preference number: 4 (lower is better)
Translates to: SPHTHYPTSGDQRGLTSRHRLRR*WAWHWG
Trigger: GCCCCAGTGCCAAGCCCAGCACCTCCTCAGCCGGTG...TCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp ATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCCACCGGCTGAGGAGGTaGTGGGCTTGGCACTGGGGC +
Preference number: 4 (lower is better)
Translates to: MSPHTHYPTSGDQRGLTSHRLRR*WAWHWG
Trigger: GCCCCAGTGCCAAGCCCAGCACCTCCTCAGCCGGTG...GGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGACCGCTTGGCACTGGGGCTaGGGCAGGGCGGGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: SPKGDHDREVGKWAEHQTAWHWG*GRAGCL
Trigger: CAGGCAGCCCGCCCTGCCCCAGCCCCAGTGCCAAGC...GGTCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp TGCCATGCACCCAGGCTGTGCCAGCTGCGGGCCCCAGGCTCAAAGATAGCCAGCGCTGCGTGCTGTACATaGGGGACACCAGGATCTTGC +
Preference number: 4 (lower is better)
Translates to: CHAPRLCQLRAPGSKIASAACCT*GTPGSC
Trigger: GCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGC...GCTGGCTATCTTTGAGCCTGGGGCCCGCAGCTGGCACAGCCTGGGTGCATGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACGGAGCCCTGGCTGGATaGCTGGACTCAGGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: LPTPTTQPLGTREGSHPDGALAG*LDSGVG
Trigger: GCCTACACCTGAGTCCAGGCATCCAGCCAGGGCTCC...GTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp ACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAACTGGCGAGCAGGGGCTaGCTGGGAATAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: TPTTQPLGTREGSHPDPELASRG*LGIGGC
Trigger: GCAGCCCCCTATTCCCAGGCAGCCCCTGCTCGCCAG...TTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GTGTGTCACGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGACCAGTACCCCCACCATaGGCATGGTCCCAGCCCTCA +
Preference number: 4 (lower is better)
Translates to: VCHGGHQGAVSRLHSESRPVPPP*AWSQPS
Trigger: TGAGGGCTGGGACCATGCCCATGGTGGGGGTACTGG...TCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCGTGACACAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TGCCATGCACCCAGGCTGTGCCAGCTGCGGGCCCCAGGCTCAAAGATAGCCAGCACGTGGTTCTCGTTCTaGAGTTGGTGCCAGCGCTCA +
Preference number: 4 (lower is better)
Translates to: CHAPRLCQLRAPGSKIASTWFSF*SWCQRS
Trigger: TGAGCGCTGGCACCAACTGCAGAACGAGAACCACGT...GCTGGCTATCTTTGAGCCTGGGGCCCGCAGCTGGCACAGCCTGGGTGCATGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AGATGTGGGGCCCAGCTTCATCCAGCTTGGGAGGTTGCTGGCCAGGCTGGCAAGAGCTGGAGCCCTGGCTaGATGCCTGGACTCAGGTGT +
Preference number: 4 (lower is better)
Translates to: RCGAQLHPAWEVAGQAGKSWSPG*MPGLRC
Trigger: ACACCTGAGTCCAGGCATCCAGCCAGGGCTCCAGCT...CTTGCCAGCCTGGCCAGCAACCTCCCAAGCTGGATGAAGCTGGGCCCCACATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GTGTGTCACGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAAGCTGGAGCCCTGGCTaGATGCCTGGACTCAGGTGT +
Preference number: 4 (lower is better)
Translates to: VCHGGHQGAVSRLHSESRSWSPG*MPGLRC
Trigger: ACACCTGAGTCCAGGCATCCAGCCAGGGCTCCAGCT...TCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCGTGACACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AGGAGCAAGTCCCCTCATACACAGAGCTCCGTGCCACCTGTGCCCATTTGGGGACGCGTGGGAGGCCCATaGCTTCCTCTCCCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: RSKSPHTQSSVPPVPIWGRVGGP*LPLPGA
Trigger: TGCTCCTGGGAGAGGAAGCCATGGGCCTCCCACGCG...TCCCCAAATGGGCACAGGTGGCACGGAGCTCTGTGTATGAGGGGACTTGCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGACCCCCACCATGGGCATaGTCCCAGCCCTCAGAATCC +
Preference number: 4 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRPPPWA*SQPSES
Trigger: GGATTCTGAGGGCTGGGACCATGCCCATGGTGGGGG...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp ATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGGGGGCTTGGCACTGGGGCTaGGGCAGGGCGGGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: IQTLKPRDSSSVAGPEVGAWHWG*GRAGCL
Trigger: CAGGCAGCCCGCCCTGCCCCAGCCCCAGTGCCAAGC...CCCCACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGAGTCCTGGCCCAGGAGTaGCCCTGCTGCCCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: FLLKVTMTGKWASGRSIRVLAQE*PCCPQG
Trigger: CCCCTGGGGGCAGCAGGGCCACTCCTGGGCCAGGAC...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp TGCCATGCACCCAGGCTGTGCCAGCTGCGGGCCCCAGGCTCAAAGATAGCCAGCCTTGACAAAGGGGTCTaGGTAGCCGTTGGCATCCAT +
Preference number: 4 (lower is better)
Translates to: CHAPRLCQLRAPGSKIASLDKGV*VAVGIH
Trigger: ATGGATGCCAACGGCTACTCAGACCCCTTTGTCAAG...GCTGGCTATCTTTGAGCCTGGGGCCCGCAGCTGGCACAGCCTGGGTGCATGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTTCAGGGCCTGGCTTCTaGCCTGGGGGCCTCCTGTCC +
Preference number: 4 (lower is better)
Translates to: PPGITGKRVEGRQNRGGSSGPGF*PGGLLS
Trigger: GGACAGGAGGCCCCCAGGGCAGAAGCCAGGCCCTGA...AGAGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACACAATGAGGCCGCCCTaGTGCGTGCTGTACATGAGG +
Preference number: 4 (lower is better)
Translates to: RRASGRCEQAAFRVQSQNTMRPP*CVLYMR
Trigger: CCTCATGTACAGCACGCAGCAGGGCGGCCTCATTGT...GTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAAGCTGGAGCCCTGGCTaGATGCCTGGACTCAGGTGT +
Preference number: 4 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRSWSPG*MPGLRC
Trigger: ACACCTGAGTCCAGGCATCCAGCCAGGGCTCCAGCT...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GCCATGGAAGTGGGAAGGTTAGCCACCTTGGGGCAGGCAGAGCCTGATTCTAGAGCCTGGCTTCTGCCCTaGGGGCCTCCTGTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: AMEVGRLATLGQAEPDSRAWLLP*GPPVLH
Trigger: ATGGAGGACAGGAGGCCCCCAGGGCAGAAGCCAGGC...TCTAGAATCAGGCTCTGCCTGCCCCAAGGTGGCTAACCTTCCCACTTCCATGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AATCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGGTCCTGGCCCAGGAGTaGCCCTGCTGCCCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: NLFVNVSPHPLPNLWGPEVLAQE*PCCPQG
Trigger: CCCCTGGGGGCAGCAGGGCCACTCCTGGGCCAGGAC...CTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGATCCGCAGGTGGTGGCTaGCGAGCAGGGGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: FLLKVTMTGKWASGRSIRSAGGG*RAGAAW
Trigger: CCAGGCAGCCCCTGCTCGCCAGCCACCACCTGCGGA...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GACCTGAAGTGGGGGAGACATGAAAGGTTCATAGTTGGCAGGGGAGGCTCTGAACTCCTCCTCCGCAGGTaGTGGCTGGCGAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: DLKWGRHERFIVGRGGSELLLRR*WLASRG
Trigger: GCCCCTGCTCGCCAGCCACCACCTGCGGAGGAGGAG...TTCAGAGCCTCCCCTGCCAACTATGAACCTTTCATGTCTCCCCCACTTCAGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTACTCCTCCTCCGCAGGTaGTGGCTGGCGAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: GPERAHIQTLKPRDSSSVLLLRR*WLASRG
Trigger: GCCCCTGCTCGCCAGCCACCACCTGCGGAGGAGGAG...TACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACATGGACGGACCATCCTaGCTGCAGCTGTTCCTTGTC +
Preference number: 4 (lower is better)
Translates to: RRASGRCEQAAFRVQSQNMDGPS*LQLFLV
Trigger: GACAAGGAACAGCTGCAGGCAGGATGGTCCGTCCAT...GTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGACCACCAGGCGCCCAATaGGTTCCTGTTCCATGGCTT +
Preference number: 4 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRPPGAQ*VPVPWL
Trigger: AAGCCATGGAACAGGAACGCATTGGGCGCCTGGTGG...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GACCTGAAGTGGGGGAGACATGAAAGGTTCATAGTTGGCAGGGGAGGCTCTGAATCAGGGCCTGGCTTCTaGCCTGGGGGCCTCCTGTCC +
Preference number: 4 (lower is better)
Translates to: DLKWGRHERFIVGRGGSESGPGF*PGGLLS
Trigger: GGACAGGAGGCCCCCAGGGCAGAAGCCAGGCCCTGA...TTCAGAGCCTCCCCTGCCAACTATGAACCTTTCATGTCTCCCCCACTTCAGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGTCAGGGCCTGGCTTCTaGCCTGGGGGCCTCCTGTCC +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTRESGPGF*PGGLLS
Trigger: GGACAGGAGGCCCCCAGGGCAGAAGCCAGGCCCTGA...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CACCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCCTCATAGAGAGCCATaGCACGGGCCGACCCGGTGG +
Preference number: 4 (lower is better)
Translates to: HHQESRGREWKVDRTEVAPHREP*HGPTRW
Trigger: CCACCGGGTCGGCCCGTGGCATGGCTCTCTATGAGG...AGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTGCTGGGCTTGGCACTaGGGCTGGGGCAGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPCWAWH*GWGRAG
Trigger: GCCCGCCCTGCCCCAGCCCCAGTGCCAAGCCCAGCA...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TGCCATGCACCCAGGCTGTGCCAGCTGCGGGCCCCAGGCTCAAAGATAGCCAGCGATCTGCCAAGCCATTaGAATCCATGGGCTTCAGTC +
Preference number: 4 (lower is better)
Translates to: CHAPRLCQLRAPGSKIASDLPSH*NPWASV
Trigger: GACTGAAGCCCATGGATTCCAATGGCTTGGCAGATC...GCTGGCTATCTTTGAGCCTGGGGCCCGCAGCTGGCACAGCCTGGGTGCATGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp TCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGAGGTCATAGAGAAGGCTaGATTCCAGGGCACCCAGTG +
Preference number: 4 (lower is better)
Translates to: SPHTHYPTSGDQRGLTSRGHREG*IPGHPV
Trigger: CACTGGGTGCCCTGGAATTCAGCCTTCTCTATGACC...TCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp ATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCTCTTCCTGCTTCCTCTaGCTGTCGGTCTGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: MSPHTHYPTSGDQRGLTSSSCFL*LSVCAP
Trigger: TGGAGCACAGACCGACAGGCAGAGGAAGCAGGAAGA...GGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACGGCTGTGGAAGGACCTaGTTGGGGAAACCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: RRASGRCEQAAFRVQSQNGCGRT*LGKPLK
Trigger: CTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACAGCC...GTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACGGCTGTGGAAGGACCTaGTTGGGGAAACCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: LPTPTTQPLGTREGSHPDGCGRT*LGKPLK
Trigger: CTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACAGCC...GTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTGGAGCCCTGGCTGGATaGCTGGACTCAGGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: PPGITGKRVEGRQNRGGSGALAG*LDSGVG
Trigger: GCCTACACCTGAGTCCAGGCATCCAGCCAGGGCTCC...AGAGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp AATCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGCTGGCGAGCAGGGGCTaGCTGGGAATAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: NLFVNVSPHPLPNLWGPELASRG*LGIGGC
Trigger: GCAGCCCCCTATTCCCAGGCAGCCCCTGCTCGCCAG...CTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACCTGGCGAGCAGGGGCTaGCTGGGAATAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GWTEAASMYNFCPPPGPYLASRG*LGIGGC
Trigger: GCAGCCCCCTATTCCCAGGCAGCCCCTGCTCGCCAG...GTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACGAAGCTTGTTGGACTTaGTGGCTCCAGGCAGCAGAT +
Preference number: 4 (lower is better)
Translates to: LPTPTTQPLGTREGSHPDEACWT*WLQAAD
Trigger: ATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTC...GTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGCCTGGCTTCTGCCCTaGGGGCCTCCTGTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTREAWLLP*GPPVLH
Trigger: ATGGAGGACAGGAGGCCCCCAGGGCAGAAGCCAGGC...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGAGCCTGGCTTCTGCCCTaGGGGCCTCCTGTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: FLLKVTMTGKWASGRSIRAWLLP*GPPVLH
Trigger: ATGGAGGACAGGAGGCCCCCAGGGCAGAAGCCAGGC...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CAGTGCAAAGAAAGGCAGTGGGCATGGTGCATGCACCGGGGGACTTGTGTTCTACCAGTACCCCCACCATaGGCATGGTCCCAGCCCTCA +
Preference number: 4 (lower is better)
Translates to: QCKERQWAWCMHRGTCVLPVPPP*AWSQPS
Trigger: TGAGGGCTGGGACCATGCCCATGGTGGGGGTACTGG...TAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCTTTGCACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp ATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCATAGCCAGGGTCACTTaGAGGAGCCTCTGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: MSPHTHYPTSGDQRGLTSIARVT*RSLCAL
Trigger: CAGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTAT...GGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTCCTCCTCCGCAGGTaGTGGCTGGCGAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: WTEAASMYNFCPPPGPYNLLLRR*WLASRG
Trigger: GCCCCTGCTCGCCAGCCACCACCTGCGGAGGAGGAG...GTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CAGTGCAAAGAAAGGCAGTGGGCATGGTGCATGCACCGGGGGACTTGTGTTCTATCAAGCGCTCGCCTTTaGCCGAGATCCCCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: QCKERQWAWCMHRGTCVLSSARL*PRSPAG
Trigger: GCCAGCTGGGGATCTCGGCCAAAGGCGAGCGCTTGA...TAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCTTTGCACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTTCAAGCGCTCGCCTTTaGCCGAGATCCCCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: PPGITGKRVEGRQNRGGSSSARL*PRSPAG
Trigger: GCCAGCTGGGGATCTCGGCCAAAGGCGAGCGCTTGA...AGAGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp CTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACACCTGGTCTCACCAATaGACTCGTTGTGGCCAAACT +
Preference number: 4 (lower is better)
Translates to: LPTPTTQPLGTREGSHPDTWSHQ*TRCGQT
Trigger: AGTTTGGCCACAACGAGTTCATTGGTGAGACCAGGT...GTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp AGATGTGGGGCCCAGCTTCATCCAGCTTGGGAGGTTGCTGGCCAGGCTGGCAAGGGCTTCCATCTTCTCTaGCCGAGCAATCACTCTGTT +
Preference number: 4 (lower is better)
Translates to: RCGAQLHPAWEVAGQAGKGFHLL*PSNHSV
Trigger: AACAGAGTGATTGCTCGGGCAGAGAAGATGGAAGCC...CTTGCCAGCCTGGCCAGCAACCTCCCAAGCTGGATGAAGCTGGGCCCCACATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGACCCCACCAGGCGCCCAATaGGTTCCTGTTCCATGGCTT +
Preference number: 4 (lower is better)
Translates to: SPKGDHDREVGKWAEHQTPPGAQ*VPVPWL
Trigger: AAGCCATGGAACAGGAACGCATTGGGCGCCTGGTGG...GGTCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGGCTGTGGAAGGACCTaGTTGGGGAAACCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRGCGRT*LGKPLK
Trigger: CTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACAGCC...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGAGCCCTGGCTGGATaGCTGGACTCAGGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTREGALAG*LDSGVG
Trigger: GCCTACACCTGAGTCCAGGCATCCAGCCAGGGCTCC...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTCACCGGCTGAGGAGGTaGTGGGCTTGGCACTGGGGC +
Preference number: 4 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPHRLRR*WAWHWG
Trigger: GCCCCAGTGCCAAGCCCAGCACCTCCTCAGCCGGTG...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCTGATGATGGTGCACTaGAGGTTGCTGTTGTCTTGG +
Preference number: 4 (lower is better)
Translates to: LPTPTTQPLGTREGSHPDLMMVH*RLLLSW
Trigger: CCAAGACAACAGCAACCTGCAGTGCACCATCATCAG...GTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGACCACATTCTTCCTCATaGTCTCCAGACGGTCCACCA +
Preference number: 4 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRPHSSS*SPDGPP
Trigger: TGGTGGACCGTCTGGAGACCATGAGGAAGAATGTGG...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp ATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGGGGCTCGAGCTGGAGCCCTaGCTGGATGCCTGGACTCAG +
Preference number: 4 (lower is better)
Translates to: IQTLKPRDSSSVAGPEVGLELEP*LDAWTQ
Trigger: CTGAGTCCAGGCATCCAGCCAGGGCTCCAGCTCGAG...CCCCACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GACCTGAAGTGGGGGAGACATGAAAGGTTCATAGTTGGCAGGGGAGGCTCTGAACCCCCACCATGGGCATaGTCCCAGCCCTCAGAATCC +
Preference number: 4 (lower is better)
Translates to: DLKWGRHERFIVGRGGSEPPPWA*SQPSES
Trigger: GGATTCTGAGGGCTGGGACCATGCCCATGGTGGGGG...TTCAGAGCCTCCCCTGCCAACTATGAACCTTTCATGTCTCCCCCACTTCAGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTACCAGTACCCCCACCATaGGCATGGTCCCAGCCCTCA +
Preference number: 4 (lower is better)
Translates to: GPERAHIQTLKPRDSSSVPVPPP*AWSQPS
Trigger: TGAGGGCTGGGACCATGCCCATGGTGGGGGTACTGG...TACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AATCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGCTCCGGAAAGCGTCCTaGCCCAGGAGTGGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: NLFVNVSPHPLPNLWGPELRKAS*PRSGPA
Trigger: AGCAGGGCCACTCCTGGGCCAGGACGCTTTCCGGAG...CTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR CAA 72 bp TTAATGTCAGAGATGTGGGGCCCAGCTTCATCCAGCTaGGGAGGTTGCTGGCCAGGCTGGCAAGGGGCACAT +
Preference number: 4 (lower is better)
Translates to: LMSEMWGPASSS*GGCWPGWQGAH
Trigger: ATGTGCCCCTTGCCAGCCTGGCCAGCAACCTCCCAAGCTGGATGAAGCTGGGCCCCACATCTCTGACATTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGATTCCAGACCTCTCTCTaGTCAAGGCAGATCTTGCAG +
Preference number: 4 (lower is better)
Translates to: SPHTHYPTSGDQRGLTSRFQTSL*SRQILQ
Trigger: CTGCAAGATCTGCCTTGAGCAGAGAGAGGTCTGGAA...TCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp ATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCCTGATGATGGTGCACTaGAGGTTGCTGTTGTCTTGG +
Preference number: 4 (lower is better)
Translates to: MSPHTHYPTSGDQRGLTSLMMVH*RLLLSW
Trigger: CCAAGACAACAGCAACCTGCAGTGCACCATCATCAG...GGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCCTCATAGAGAGCCATaGCACGGGCCGACCCGGTGG +
Preference number: 4 (lower is better)
Translates to: WTEAASMYNFCPPPGPYNPHREP*HGPTRW
Trigger: CCACCGGGTCGGCCCGTGGCATGGCTCTCTATGAGG...GTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGACCACGTGGTTCTCGTTCTaGAGTTGGTGCCAGCGCTCA +
Preference number: 4 (lower is better)
Translates to: SPKGDHDREVGKWAEHQTTWFSF*SWCQRS
Trigger: TGAGCGCTGGCACCAACTGCAGAACGAGAACCACGT...GGTCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp ACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAATGCGTTCCTGTTCCATaGCTTCCATCTTCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: TPTTQPLGTREGSHPDPECVPVP*LPSSLP
Trigger: GGGCAGAGAAGATGGAAGCCATGGAACAGGAACGCA...TTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp ACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAACCACATTCTTCCTCATaGTCTCCAGACGGTCCACCA +
Preference number: 4 (lower is better)
Translates to: TPTTQPLGTREGSHPDPEPHSSS*SPDGPP
Trigger: TGGTGGACCGTCTGGAGACCATGAGGAAGAATGTGG...TTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GAGTGCTTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTCGCGTGGGAGGCCCATaGCTTCCTCTCCCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: ECFGWTEAASMYNFCPPPRVGGP*LPLPGA
Trigger: TGCTCCTGGGAGAGGAAGCCATGGGCCTCCCACGCG...AGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAAGCACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTCGCGTGGGAGGCCCATaGCTTCCTCTCCCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPRVGGP*LPLPGA
Trigger: TGCTCCTGGGAGAGGAAGCCATGGGCCTCCCACGCG...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGACCATAGCCAGGGTCACTTaGAGGAGCCTCTGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: SPKGDHDREVGKWAEHQTIARVT*RSLCAL
Trigger: CAGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTAT...GGTCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTTCCGCAGGTGGTGGCTaGCGAGCAGGGGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: QCIISALLLVLTTYGFTSSAGGG*RAGAAW
Trigger: CCAGGCAGCCCCTGCTCGCCAGCCACCACCTGCGGA...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGATCTGAGTCTTGTGCTTaGCTTTCTTCCCCATGTCCG +
Preference number: 4 (lower is better)
Translates to: SPHTHYPTSGDQRGLTSRSESCA*LSSPCP
Trigger: CGGACATGGGGAAGAAAGCCAAGCACAAGACTCAGA...TCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGATTCTCGTTCTGCAGTTaGTGCCAGCGCTCAATCTTC +
Preference number: 4 (lower is better)
Translates to: SPHTHYPTSGDQRGLTSRFSFCS*CQRSIF
Trigger: GAAGATTGAGCGCTGGCACCAACTGCAGAACGAGAA...TCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
3UTR CAA 72 bp ACCAGGGGAGCCATGGAAGTGGGAAGGTTAGCCACCTaGGGGCAGGCAGAGCCTGATTCTAGAAGAGAGTCA +
Preference number: 4 (lower is better)
Translates to: TRGAMEVGRLAT*GQAEPDSRRES
Trigger: TGACTCTCTTCTAGAATCAGGCTCTGCCTGCCCCAAGGTGGCTAACCTTCCCACTTCCATGGCTCCCCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
3UTR CAA 72 bp AGAAAGGCAGTGGGCATGGTGCATGCACCGGGGGACTaGTGTTCTATGTGGAGGGGTGGGTATGTGTGTCAC +
Preference number: 4 (lower is better)
Translates to: RKAVGMVHAPGD*CSMWRGGYVCH
Trigger: GTGACACACATACCCACCCCTCCACATAGAACACAAGTCCCCCGGTGCATGCACCATGCCCACTGCCTTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GCTTGGGCGACTCAGCCAGCATGCTTTCTCCTAAAGGTGACCATGACAGGGAAGTCTTCCTGCTTCCTCTaGCTGTCGGTCTGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: AWATQPACFLLKVTMTGKSSCFL*LSVCAP
Trigger: TGGAGCACAGACCGACAGGCAGAGGAAGCAGGAAGA...CTTCCCTGTCATGGTCACCTTTAGGAGAAAGCATGCTGGCTGAGTCGCCCAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GTGTGTCACGGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGACAACCCCACACTTGGTaGAGACATTCTTCTTACAGT +
Preference number: 4 (lower is better)
Translates to: VCHGGHQGAVSRLHSESRQPHTW*RHSSYS
Trigger: ACTGTAAGAAGAATGTCTGCACCAAGTGTGGGGTTG...TCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCCGTGACACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGAACAATGAGGCCGCCCTaGTGCGTGCTGTACATGAGG +
Preference number: 4 (lower is better)
Translates to: FLLKVTMTGKWASGRSIRTMRPP*CVLYMR
Trigger: CCTCATGTACAGCACGCAGCAGGGCGGCCTCATTGT...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AGGAGCAAGTCCCCTCATACACAGAGCTCCGTGCCACCTGTGCCCATTTGGGGATCACCAGCAGGCTGCTaGGGCTTGGTCTTCTTTATA +
Preference number: 4 (lower is better)
Translates to: RSKSPHTQSSVPPVPIWGSPAGC*GLVFFI
Trigger: TATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGA...TCCCCAAATGGGCACAGGTGGCACGGAGCTCTGTGTATGAGGGGACTTGCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTCTCGAGCTGGAGCCCTaGCTGGATGCCTGGACTCAG +
Preference number: 4 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPLELEP*LDAWTQ
Trigger: CTGAGTCCAGGCATCCAGCCAGGGCTCCAGCTCGAG...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CACCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTATAGCCAGGGTCACTTaGAGGAGCCTCTGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: HHQESRGREWKVDRTEVAIARVT*RSLCAL
Trigger: CAGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTAT...AGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACTCAAGCGCTCGCCTTTaGCCGAGATCCCCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: WTEAASMYNFCPPPGPYNSSARL*PRSPAG
Trigger: GCCAGCTGGGGATCTCGGCCAAAGGCGAGCGCTTGA...GTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp GGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGGTCATAGAGAAGGCTaGATTCCAGGGCACCCAGTG +
Preference number: 4 (lower is better)
Translates to: GPERAHIQTLKPRDSSSVGHREG*IPGHPV
Trigger: CACTGGGTGCCCTGGAATTCAGCCTTCTCTATGACC...TACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGTTCACCAGCAGGCTaGTGGGGCTTGGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTREGSPAG*WGLVFF
Trigger: AAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACC...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGACTTCACATAGGGATCTaGCAAGCCATTGGAATCCAT +
Preference number: 4 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRLHIGI*QAIGIH
Trigger: ATGGATTCCAATGGCTTGGCAGATCCCTATGTGAAG...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCCCTCATAGAGAGCCATaGCACGGGCCGACCCGGTGG +
Preference number: 4 (lower is better)
Translates to: LILEESHFRETQESLRNSPHREP*HGPTRW
Trigger: CCACCGGGTCGGCCCGTGGCATGGCTCTCTATGAGG...GCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGATGAGGCCGCCCTGCTaGGTGCTGTACATGAGGGAC +
Preference number: 4 (lower is better)
Translates to: EAASMYNFCPPPGPYNLWMRPPC*VLYMRD
Trigger: GTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCAT...CCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GAGTGCTTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTATGAGGCCGCCCTGCTaGGTGCTGTACATGAGGGAC +
Preference number: 4 (lower is better)
Translates to: ECFGWTEAASMYNFCPPPMRPPC*VLYMRD
Trigger: GTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCAT...AGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAAGCACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGACAATGAGGCCGCCCTaGTGCGTGCTGTACATGAGG +
Preference number: 4 (lower is better)
Translates to: HIQTLKPRDSSSVAGPEVTMRPP*CVLYMR
Trigger: CCTCATGTACAGCACGCAGCAGGGCGGCCTCATTGT...CACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp ATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCACGAGTTACTGAGAGCAGGTCCATGGCGGCCAGGTaGACACAGCGGATGATTCCC +
Preference number: 4 (lower is better)
Translates to: ISGKHKSPSGTARVTESRSMAAR*TQRMIP
Trigger: GGGAATCATCCGCTGTGTGCACCTGGCCGCCATGGA...CCTGCTCTCAGTAACTCGTGCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp ATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGGGGACGTGGTTCTCGTTCTaGAGTTGGTGCCAGCGCTCA +
Preference number: 4 (lower is better)
Translates to: IQTLKPRDSSSVAGPEVGTWFSF*SWCQRS
Trigger: TGAGCGCTGGCACCAACTGCAGAACGAGAACCACGT...CCCCACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGATCTCAACCCCACACTTaGTGCAGACATTCTTCTTAC +
Preference number: 4 (lower is better)
Translates to: SPHTHYPTSGDQRGLTSRSQPHT*CRHSSY
Trigger: GTAAGAAGAATGTCTGCACCAAGTGTGGGGTTGAGA...TCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GAGTTACTGAGAGCAGGGTGCATCTCAAGAGATGTTGGAAGGAACAAGCAAGACCCCCCACCATGGGCATaGTCCCAGCCCTCAGAATCC +
Preference number: 4 (lower is better)
Translates to: ELLRAGCISRDVGRNKQDPPPWA*SQPSES
Trigger: GGATTCTGAGGGCTGGGACCATGCCCATGGTGGGGG...GTCTTGCTTGTTCCTTCCAACATCTCTTGAGATGCACCCTGCTCTCAGTAACTC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AGCCTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACCTCCGGAAAGCGTCCTaGCCCAGGAGTGGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: SLILEESHFRETQESLRNLRKAS*PRSGPA
Trigger: AGCAGGGCCACTCCTGGGCCAGGACGCTTTCCGGAG...GTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp GAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGCTGCGTGCTGTACATaGGGGACACCAGGATCTTGC +
Preference number: 4 (lower is better)
Translates to: EAASMYNFCPPPGPYNLWAACCT*GTPGSC
Trigger: GCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGC...CCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACATGGACGGACCATCCTaGCTGCAGCTGTTCCTTGTC +
Preference number: 4 (lower is better)
Translates to: GWTEAASMYNFCPPPGPYMDGPS*LQLFLV
Trigger: GACAAGGAACAGCTGCAGGCAGGATGGTCCGTCCAT...GTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTGGCTTCCATCTTCTCTaGCCGAGCAATCACTCTGTT +
Preference number: 4 (lower is better)
Translates to: PPGITGKRVEGRQNRGGSGFHLL*PSNHSV
Trigger: AACAGAGTGATTGCTCGGGCAGAGAAGATGGAAGCC...AGAGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCCACCAGGCGCCCAATaGGTTCCTGTTCCATGGCTT +
Preference number: 4 (lower is better)
Translates to: WTEAASMYNFCPPPGPYNPPGAQ*VPVPWL
Trigger: AAGCCATGGAACAGGAACGCATTGGGCGCCTGGTGG...GTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp AGTAGAGGAAGGATAGAAGCATGGGGTCCAGGAGCAAGTCCCCTCATACACAGAGGTTCACCAGCAGGCTaGTGGGGCTTGGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: SRGRIEAWGPGASPLIHRGSPAG*WGLVFF
Trigger: AAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACC...TCTGTGTATGAGGGGACTTGCTCCTGGACCCCATGCTTCTATCCTTCCTCTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGAGAAGCTTGTTGGACTTaGTGGCTCCAGGCAGCAGAT +
Preference number: 4 (lower is better)
Translates to: FLLKVTMTGKWASGRSIREACWT*WLQAAD
Trigger: ATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTC...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AGCCTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACCTCGAGCTGGAGCCCTaGCTGGATGCCTGGACTCAG +
Preference number: 4 (lower is better)
Translates to: SLILEESHFRETQESLRNLELEP*LDAWTQ
Trigger: CTGAGTCCAGGCATCCAGCCAGGGCTCCAGCTCGAG...GTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACTTGAAGTTTTTCCTCTaGTTAGCCTTCAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: LPTPTTQPLGTREGSHPDLKFFL*LAFSFL
Trigger: CAAGAAGCTGAAGGCTAACCAGAGGAAAAACTTCAA...GTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp CACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGCTTGACAAAGGGGTCTaGGTAGCCGTTGGCATCCAT +
Preference number: 4 (lower is better)
Translates to: HIQTLKPRDSSSVAGPEVLDKGV*VAVGIH
Trigger: ATGGATGCCAACGGCTACTCAGACCCCTTTGTCAAG...CACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGACGGACCATCCTGCCTaGAGCTGTTCCTTGTCATTT +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTRETDHPA*SCSLSF
Trigger: AAATGACAAGGAACAGCTGCAGGCAGGATGGTCCGT...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACATCTTCCTGCTTCCTCTaGCTGTCGGTCTGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: DGQRQPQCIISALLLVLTSSCFL*LSVCAP
Trigger: TGGAGCACAGACCGACAGGCAGAGGAAGCAGGAAGA...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTTCCATCTTCTCTaGCCGAGCAATCACTCTGTT +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTREGFHLL*PSNHSV
Trigger: AACAGAGTGATTGCTCGGGCAGAGAAGATGGAAGCC...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GACCTGAAGTGGGGGAGACATGAAAGGTTCATAGTTGGCAGGGGAGGCTCTGAATTCCAGACCTCTCTCTaGTCAAGGCAGATCTTGCAG +
Preference number: 4 (lower is better)
Translates to: DLKWGRHERFIVGRGGSEFQTSL*SRQILQ
Trigger: CTGCAAGATCTGCCTTGAGCAGAGAGAGGTCTGGAA...TTCAGAGCCTCCCCTGCCAACTATGAACCTTTCATGTCTCCCCCACTTCAGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCTCCATGGCGGCCAGGTaGACACAGCGGATGATTCCC +
Preference number: 4 (lower is better)
Translates to: LILEESHFRETQESLRNSSMAAR*TQRMIP
Trigger: GGGAATCATCCGCTGTGTGCACCTGGCCGCCATGGA...GCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTTCCATGGCGGCCAGGTaGACACAGCGGATGATTCCC +
Preference number: 4 (lower is better)
Translates to: QCIISALLLVLTTYGFTSSMAAR*TQRMIP
Trigger: GGGAATCATCCGCTGTGTGCACCTGGCCGCCATGGA...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTGGATTTGTCATGGACCAAGAGAGTTCTGACCTAATTAAAGCTCTAAATACGTCCGCAGGTGGTGGCTaGCGAGCAGGGGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: SGFVMDQESSDLIKALNTSAGGG*RAGAAW
Trigger: CCAGGCAGCCCCTGCTCGCCAGCCACCACCTGCGGA...CGTATTTAGAGCTTTAATTAGGTCAGAACTCTCTTGGTCCATGACAAATCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGATCTGCCAAGCCATTaGAATCCATGGGCTTCAGTC +
Preference number: 4 (lower is better)
Translates to: GPERAHIQTLKPRDSSSVDLPSH*NPWASV
Trigger: GACTGAAGCCCATGGATTCCAATGGCTTGGCAGATC...TACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGTTCTCGTTCTGCAGTTaGTGCCAGCGCTCAATCTTC +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTREFSFCS*CQRSIF
Trigger: GAAGATTGAGCGCTGGCACCAACTGCAGAACGAGAA...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTGCTGCGTGCTGTACATaGGGGACACCAGGATCTTGC +
Preference number: 4 (lower is better)
Translates to: QCIISALLLVLTTYGFTSAACCT*GTPGSC
Trigger: GCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGC...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGTGGTGCACTGCAGGTTaGTGTTGTCTTGGTCATAGA +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTREWCTAG*CCLGHR
Trigger: TCTATGACCAAGACAACAGCAACCTGCAGTGCACCA...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTGCGTTCCTGTTCCATaGCTTCCATCTTCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPCVPVP*LPSSLP
Trigger: GGGCAGAGAAGATGGAAGCCATGGAACAGGAACGCA...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GAGTGCTTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTTGCGTTCCTGTTCCATaGCTTCCATCTTCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: ECFGWTEAASMYNFCPPPCVPVP*LPSSLP
Trigger: GGGCAGAGAAGATGGAAGCCATGGAACAGGAACGCA...AGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAAGCACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACTCACCAGCAGGCTGCTaGGGCTTGGTCTTCTTTATA +
Preference number: 4 (lower is better)
Translates to: GWTEAASMYNFCPPPGPYSPAGC*GLVFFI
Trigger: TATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGA...GTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CACCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCAGAGTCATAACTATTaGCTTCTTCCTCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: HHQESRGREWKVDRTEVAQSHNY*LLPPPP
Trigger: AGGAGGAGGAGGAAGAAGCCAATAGTTATGACTCTG...AGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTCCAGGGCACCCAGTGTaGTTGCTTCATCAGAGTCAT +
Preference number: 4 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPPGHPV*LLHQSH
Trigger: ATGACTCTGATGAAGCAACCACACTGGGTGCCCTGG...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACACCAGGGCACCCAGTGTaGTTGCTTCATCAGAGTCAT +
Preference number: 4 (lower is better)
Translates to: DGQRQPQCIISALLLVLTPGHPV*LLHQSH
Trigger: ATGACTCTGATGAAGCAACCACACTGGGTGCCCTGG...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp CTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCGGTCATAGAGAAGGCTaGATTCCAGGGCACCCAGTG +
Preference number: 4 (lower is better)
Translates to: LILEESHFRETQESLRNSGHREG*IPGHPV
Trigger: CACTGGGTGCCCTGGAATTCAGCCTTCTCTATGACC...GCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACGGACCATCCTGCCTaGAGCTGTTCCTTGTCATTT +
Preference number: 4 (lower is better)
Translates to: DGQRQPQCIISALLLVLTTDHPA*SCSLSF
Trigger: AAATGACAAGGAACAGCTGCAGGCAGGATGGTCCGT...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTGGTTCACCAGCAGGCTaGTGGGGCTTGGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: QCIISALLLVLTTYGFTSGSPAG*WGLVFF
Trigger: AAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACC...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGTGGTGCACTGCAGGTTaGTGTTGTCTTGGTCATAGA +
Preference number: 4 (lower is better)
Translates to: HIQTLKPRDSSSVAGPEVWCTAG*CCLGHR
Trigger: TCTATGACCAAGACAACAGCAACCTGCAGTGCACCA...CACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACACTGATGATGGTGCACTaGAGGTTGCTGTTGTCTTGG +
Preference number: 4 (lower is better)
Translates to: DGQRQPQCIISALLLVLTLMMVH*RLLLSW
Trigger: CCAAGACAACAGCAACCTGCAGTGCACCATCATCAG...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGATCTCAACCCCACACTTaGTGCAGACATTCTTCTTAC +
Preference number: 4 (lower is better)
Translates to: FLLKVTMTGKWASGRSIRSQPHT*CRHSSY
Trigger: GTAAGAAGAATGTCTGCACCAAGTGTGGGGTTGAGA...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACTCACCAGCAGGCTGCTaGGGCTTGGTCTTCTTTATA +
Preference number: 4 (lower is better)
Translates to: WTEAASMYNFCPPPGPYNSPAGC*GLVFFI
Trigger: TATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGA...GTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGCAGAGTCATAACTATTaGCTTCTTCCTCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SLCKCLPTPTTQPLGTREQSHNY*LLPPPP
Trigger: AGGAGGAGGAGGAAGAAGCCAATAGTTATGACTCTG...CTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp ATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCACGAGTTACTGAGAGCAGGTCTGAGTCTTGTGCTTaGCTTTCTTCCCCATGTCCG +
Preference number: 4 (lower is better)
Translates to: ISGKHKSPSGTARVTESRSESCA*LSSPCP
Trigger: CGGACATGGGGAAGAAAGCCAAGCACAAGACTCAGA...CCTGCTCTCAGTAACTCGTGCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACTCTGAGTCTTGTGCTTaGCTTTCTTCCCCATGTCCG +
Preference number: 4 (lower is better)
Translates to: WTEAASMYNFCPPPGPYNSESCA*LSSPCP
Trigger: CGGACATGGGGAAGAAAGCCAAGCACAAGACTCAGA...GTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTTCTCGTTCTGCAGTTaGTGCCAGCGCTCAATCTTC +
Preference number: 4 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPFSFCS*CQRSIF
Trigger: GAAGATTGAGCGCTGGCACCAACTGCAGAACGAGAA...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GAGTTACTGAGAGCAGGGTGCATCTCAAGAGATGTTGGAAGGAACAAGCAAGACTTCCAGACCTCTCTCTaGTCAAGGCAGATCTTGCAG +
Preference number: 4 (lower is better)
Translates to: ELLRAGCISRDVGRNKQDFQTSL*SRQILQ
Trigger: CTGCAAGATCTGCCTTGAGCAGAGAGAGGTCTGGAA...GTCTTGCTTGTTCCTTCCAACATCTCTTGAGATGCACCCTGCTCTCAGTAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACATGGTGCACTGCAGGTTaGTGTTGTCTTGGTCATAGA +
Preference number: 4 (lower is better)
Translates to: DGQRQPQCIISALLLVLTWCTAG*CCLGHR
Trigger: TCTATGACCAAGACAACAGCAACCTGCAGTGCACCA...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGCTTCACATAGGGATCTaGCAAGCCATTGGAATCCAT +
Preference number: 4 (lower is better)
Translates to: HIQTLKPRDSSSVAGPEVLHIGI*QAIGIH
Trigger: ATGGATTCCAATGGCTTGGCAGATCCCTATGTGAAG...CACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGCAGAGTCATAACTATTaGCTTCTTCCTCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: HIQTLKPRDSSSVAGPEVQSHNY*LLPPPP
Trigger: AGGAGGAGGAGGAAGAAGCCAATAGTTATGACTCTG...CACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTCCAGGGCACCCAGTGTaGTTGCTTCATCAGAGTCAT +
Preference number: 4 (lower is better)
Translates to: QCIISALLLVLTTYGFTSPGHPV*LLHQSH
Trigger: ATGACTCTGATGAAGCAACCACACTGGGTGCCCTGG...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GAGTTACTGAGAGCAGGGTGCATCTCAAGAGATGTTGGAAGGAACAAGCAAGACGATCTGCCAAGCCATTaGAATCCATGGGCTTCAGTC +
Preference number: 4 (lower is better)
Translates to: ELLRAGCISRDVGRNKQDDLPSH*NPWASV
Trigger: GACTGAAGCCCATGGATTCCAATGGCTTGGCAGATC...GTCTTGCTTGTTCCTTCCAACATCTCTTGAGATGCACCCTGCTCTCAGTAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp GCTTGGGCGACTCAGCCAGCATGCTTTCTCCTAAAGGTGACCATGACAGGGAAGTTGAAGTTTTTCCTCTaGTTAGCCTTCAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: AWATQPACFLLKVTMTGKLKFFL*LAFSFL
Trigger: CAAGAAGCTGAAGGCTAACCAGAGGAAAAACTTCAA...CTTCCCTGTCATGGTCACCTTTAGGAGAAAGCATGCTGGCTGAGTCGCCCAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp AGCCTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACACCTGGTCTCACCAATaGACTCGTTGTGGCCAAACT +
Preference number: 4 (lower is better)
Translates to: SLILEESHFRETQESLRNTWSHQ*TRCGQT
Trigger: AGTTTGGCCACAACGAGTTCATTGGTGAGACCAGGT...GTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp GGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGTCTTCTTTTTAATCTaGGTCTTGTGCTTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: GPERAHIQTLKPRDSSSVVFFLI*VLCLAF
Trigger: GAAAGCCAAGCACAAGACTCAGATTAAAAAGAAGAC...TACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTACGGACCATCCTGCCTaGAGCTGTTCCTTGTCATTT +
Preference number: 4 (lower is better)
Translates to: QCIISALLLVLTTYGFTSTDHPA*SCSLSF
Trigger: AAATGACAAGGAACAGCTGCAGGCAGGATGGTCCGT...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp ATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCACGAGTTACTGAGAGCAGGCAACCCCACACTTGGTaGAGACATTCTTCTTACAGT +
Preference number: 4 (lower is better)
Translates to: ISGKHKSPSGTARVTESRQPHTW*RHSSYS
Trigger: ACTGTAAGAAGAATGTCTGCACCAAGTGTGGGGTTG...CCTGCTCTCAGTAACTCGTGCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp GGCAAAACTATCAAGATGGGAAAAACCAGACTTGCCTCTCATGTGAGGAAGATGGAAGCTTGTTGGACTTaGTGGCTCCAGGCAGCAGAT +
Preference number: 4 (lower is better)
Translates to: GKTIKMGKTRLASHVRKMEACWT*WLQAAD
Trigger: ATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTC...CATCTTCCTCACATGAGAGGCAAGTCTGGTTTTTCCCATCTTGATAGTTTTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR GCA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTCAACCCCACACTTGGTaGAGACATTCTTCTTACAGT +
Preference number: 4 (lower is better)
Translates to: QCIISALLLVLTTYGFTSQPHTW*RHSSYS
Trigger: ACTGTAAGAAGAATGTCTGCACCAAGTGTGGGGTTG...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR TCA 90 bp CTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCGTCTTCTTTTTAATCTaGGTCTTGTGCTTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: LILEESHFRETQESLRNSVFFLI*VLCLAF
Trigger: GAAAGCCAAGCACAAGACTCAGATTAAAAAGAAGAC...GCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CCA 90 bp AGCCTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACTTGAAGTTTTTCCTCTaGTTAGCCTTCAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: SLILEESHFRETQESLRNLKFFL*LAFSFL
Trigger: CAAGAAGCTGAAGGCTAACCAGAGGAAAAACTTCAA...GTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS CCA 90 bp AGGGTCACTTGGAGGAGCCTCTGTGCTCTGCTCCGGAAAGCGTCCTaGCCCAGGAGTGGCCCTGCTGCCCCCAGGGGGCCCTGGCTGCAC +
Preference number: 5 (lower is better)
Translates to: RVTWRSLCALLRKAS*PRSGPAAPRGPWLH
Trigger: GTGCAGCCAGGGCCCCCTGGGGGCAGCAGGGCCACTCCTGGGCCAGGACGCTTTCCGGAGCAGAGCACAGAGGCTCCTCCAAGTGACCCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 90 bp GGCATGGTCCCAGCCCTCAGAATCCCGGGCGGCTGTACTCATCCGTaGCTCAGAGGCCCTACGCGTGGGAGGCCCATGGCTTCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: GMVPALRIPGGCTHP*LRGPTRGRPMASSP
Trigger: GGGAGAGGAAGCCATGGGCCTCCCACGCGTAGGGCCTCTGAGGCACGGATGAGTACAGCCGCCCGGGATTCTGAGGGCTGGGACCATGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 90 bp CCTGCTGGGCTACGGCTGGTGTCTCCAGTACCCCCACCATGGGCATaGTCCCAGCCCTCAGAATCCCGGGCGGCTGTACTCATCCGTGCC +
Preference number: 5 (lower is better)
Translates to: PAGLRLVSPVPPPWA*SQPSESRAAVLIRA
Trigger: GGCACGGATGAGTACAGCCGCCCGGGATTCTGAGGGCTGGGACCATGCCCATGGTGGGGGTACTGGAGACACCAGCCGTAGCCCAGCAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 90 bp CTCAAACCTGCTGGGCTACGGCTGGTGTCTCCAGTACCCCCACCATaGGCATGGTCCCAGCCCTCAGAATCCCGGGCGGCTGTACTCATC +
Preference number: 5 (lower is better)
Translates to: LKPAGLRLVSPVPPP*AWSQPSESRAAVLI
Trigger: GATGAGTACAGCCGCCCGGGATTCTGAGGGCTGGGACCATGCCCATGGTGGGGGTACTGGAGACACCAGCCGTAGCCCAGCAGGTTTGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGTTCAAGCGCTCGCCTTaGGCCGAGATCCCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: PHPLPNLWGPERAHIQTLFKRSP*AEIPSW
Trigger: CCAGCTGGGGATCTCGGCCAAAGGCGAGCGCTTGAA...CAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 90 bp GACTCAGGTGTAGGCTGCTCCTGGGTGGCCGGTTCACCAGCAGGCTaGTGGGGCTTGGTCTTCTTTATAGGCATGGGCTGTGGAAGGACC +
Preference number: 5 (lower is better)
Translates to: DSGVGCSWVAGSPAG*WGLVFFIGMGCGRT
Trigger: GGTCCTTCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACCGGCCACCCAGGAGCAGCCTACACCTGAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 90 bp GCCAGGTGCACACAGCGGATGATTCCCACAATGAGGCCGCCCTGCTaGGTGCTGTACATGAGGGACACCAGGATCTTGCCCCGTTCCTCT +
Preference number: 5 (lower is better)
Translates to: ARCTQRMIPTMRPPC*VLYMRDTRILPRSS
Trigger: AGAGGAACGGGGCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCATTGTGGGAATCATCCGCTGTGTGCACCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 90 bp TCAGGTGTAGGCTGCTCCTGGGTGGCCGGTTCACCAGCAGGCTGCTaGGGCTTGGTCTTCTTTATAGGCATGGGCTGTGGAAGGACCTGC +
Preference number: 5 (lower is better)
Translates to: SGVGCSWVAGSPAGC*GLVFFIGMGCGRTC
Trigger: GCAGGTCCTTCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACCGGCCACCCAGGAGCAGCCTACACCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCGCCTGCAGCTGTTCCTaGTCATTTGACTGCAGAGGG +
Preference number: 5 (lower is better)
Translates to: GGHQGAVSRLHSESRAKTACSCS*SFDCRG
Trigger: CCCTCTGCAGTCAAATGACAAGGAACAGCTGCAGGC...GGTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp AGGAGCAAGTCCCCTCATACACAGAGCTCCGTGCCACCTGTGCCCATTTGGGGAACCGGATGCGGACGGTaGTTGGAGGTCTCAACCCCA +
Preference number: 5 (lower is better)
Translates to: RSKSPHTQSSVPPVPIWGTGCGR*LEVSTP
Trigger: TGGGGTTGAGACCTCCAACAACCGTCCGCATCCGGT...TCCCCAAATGGGCACAGGTGGCACGGAGCTCTGTGTATGAGGGGACTTGCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGATAGCCAGGGTCACTaGGAGGAGCCTCTGTGCTCT +
Preference number: 5 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRDSQGH*EEPLCS
Trigger: AGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATC...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TGCCATGCACCCAGGCTGTGCCAGCTGCGGGCCCCAGGCTCAAAGATAGCCAGCTGTTGCGCAGGGTCTTaGTACGAAGCTTGTTGGACT +
Preference number: 5 (lower is better)
Translates to: CHAPRLCQLRAPGSKIASCCAGS*YEACWT
Trigger: AGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACA...GCTGGCTATCTTTGAGCCTGGGGCCCGCAGCTGGCACAGCCTGGGTGCATGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS GCA 90 bp CGACACAGGCCGAGCCCAGCATACCCAGCTGTTCCCCACACAGAATaGAGCGGTTCACGCCATCTCCAGCCACATTCTTCCTCATGGTCT +
Preference number: 5 (lower is better)
Translates to: RHRPSPAYPAVPHTE*SGSRHLQPHSSSWS
Trigger: AGACCATGAGGAAGAATGTGGCTGGAGATGGCGTGAACCGCTGCATTCTGTGTGGGGAACAGCTGGGTATGCTGGGCTCGGCCTGTGTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp ACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGATAGCCAGGGTCACTaGGAGGAGCCTCTGTGCTCT +
Preference number: 5 (lower is better)
Translates to: TPTTQPLGTREGSHPDPEDSQGH*EEPLCS
Trigger: AGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATC...TTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGAGGGCATCAGGGCGCTGTGAGCAGGCTGCATTCCGAGTCCAGAGCCAAAACCGGATCTGCCAAGCCATaGGAATCCATGGGCTTCAGT +
Preference number: 5 (lower is better)
Translates to: GGHQGAVSRLHSESRAKTGSAKP*ESMGFS
Trigger: ACTGAAGCCCATGGATTCCAATGGCTTGGCAGATCC...GGTTTTGGCTCTGGACTCGGAATGCAGCCTGCTCACAGCGCCCTGATGCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACGTTCTCGTTCTGCAGTaGGTGCCAGCGCTCAATCTT +
Preference number: 5 (lower is better)
Translates to: LPTPTTQPLGTREGSHPDVLVLQ*VPALNL
Trigger: AAGATTGAGCGCTGGCACCAACTGCAGAACGAGAAC...GTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 90 bp ACAGAATGCAGCGGTTCACGCCATCTCCAGCCACATTCTTCCTCATaGTCTCCAGACGGTCCACCAGGCGCCCAATGCGTTCCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: TECSGSRHLQPHSSS*SPDGPPGAQCVPVP
Trigger: TGGAACAGGAACGCATTGGGCGCCTGGTGGACCGTCTGGAGACCATGAGGAAGAATGTGGCTGGAGATGGCGTGAACCGCTGCATTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGAGCTGTTCCTTGTCATTaGACTGCAGAGGGCCATCAC +
Preference number: 5 (lower is better)
Translates to: SPHTHYPTSGDQRGLTSRAVPCH*TAEGHH
Trigger: GTGATGGCCCTCTGCAGTCAAATGACAAGGAACAGC...TCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGCGAGCAATCACTCTGTaGATGATCTCCTTCTCCTCG +
Preference number: 5 (lower is better)
Translates to: PHPLPNLWGPERAHIQTLRAITL*MISFSS
Trigger: CGAGGAGAAGGAGATCATCAACAGAGTGATTGCTCG...CAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCGAGCAATCACTCTGTaGATGATCTCCTTCTCCTCG +
Preference number: 5 (lower is better)
Translates to: LPTPTTQPLGTREGSHPDRAITL*MISFSS
Trigger: CGAGGAGAAGGAGATCATCAACAGAGTGATTGCTCG...GTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGGTCTTTGTACGAAGCTaGTTGGACTTGCTGGCTCCA +
Preference number: 5 (lower is better)
Translates to: PHPLPNLWGPERAHIQTLVFVRS*LDLLAP
Trigger: TGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGAC...CAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS TCA 90 bp TCCAGGATGGACGGACCATCCTGCCTGCAGCTGTTCCTTGTCATTTaGCTGCAGAGGGCCATCACCAGGGTACATCCATCGGTTCACCAC +
Preference number: 5 (lower is better)
Translates to: SRMDGPSCLQLFLVI*LQRAITRVHPSVHH
Trigger: GTGGTGAACCGATGGATGTACCCTGGTGATGGCCCTCTGCAGTCAAATGACAAGGAACAGCTGCAGGCAGGATGGTCCGTCCATCCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079204.9
ENSMUST00000200792.2
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGTTCAAGCGCTCGCCTTaGGCCGAGATCCCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: HIQTLKPRDSSSVAGPEVFKRSP*AEIPSW
Trigger: CCAGCTGGGGATCTCGGCCAAAGGCGAGCGCTTGAA...CACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 90 bp GCCATACCGGATGCGGACGGTTGTTGGAGGTCTCAACCCCACACTTaGTGCAGACATTCTTCTTACAGTCTTCACACACGACACAGGCCG +
Preference number: 5 (lower is better)
Translates to: AIPDADGCWRSQPHT*CRHSSYSLHTRHRP
Trigger: CGGCCTGTGTCGTGTGTGAAGACTGTAAGAAGAATGTCTGCACCAAGTGTGGGGTTGAGACCTCCAACAACCGTCCGCATCCGGTATGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp AATCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGACCGGATGCGGACGGTaGTTGGAGGTCTCAACCCCA +
Preference number: 5 (lower is better)
Translates to: NLFVNVSPHPLPNLWGPETGCGR*LEVSTP
Trigger: TGGGGTTGAGACCTCCAACAACCGTCCGCATCCGGT...CTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACGCTCCAGGCAGATGTaGAAGTTTTTCCTCTGGTTA +
Preference number: 5 (lower is better)
Translates to: SPHTHYPTSGDQRGLTSRRSRQM*KFFLWL
Trigger: TAACCAGAGGAAAAACTTCAACATCTGCCTGGAGCG...TCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 90 bp ATACCGGATGCGGACGGTTGTTGGAGGTCTCAACCCCACACTTGGTaGAGACATTCTTCTTACAGTCTTCACACACGACACAGGCCGAGC +
Preference number: 5 (lower is better)
Translates to: IPDADGCWRSQPHTW*RHSSYSLHTRHRPS
Trigger: GCTCGGCCTGTGTCGTGTGTGAAGACTGTAAGAAGAATGTCTGCACCAAGTGTGGGGTTGAGACCTCCAACAACCGTCCGCATCCGGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 90 bp TGCTGGGGCTTGGTCTTCTTTATAGGCATGGGCTGTGGAAGGACCTaGTTGGGGAAACCTTTGAAGAACCATGCTCCTGAGCGCTTCCAG +
Preference number: 5 (lower is better)
Translates to: CWGLVFFIGMGCGRT*LGKPLKNHAPERFQ
Trigger: CTGGAAGCGCTCAGGAGCATGGTTCTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 90 bp TCCGAGTGTTGCGCAGGGTCTTTGTACGAAGCTTGTTGGACTTGCTaGCTCCAGGCAGCAGATGAAGCTTCACATAGGGATCTGCCAAGC +
Preference number: 5 (lower is better)
Translates to: SECCAGSLYEACWTC*LQAADEASHRDLPS
Trigger: GCTTGGCAGATCCCTATGTGAAGCTTCATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACACTCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTATCGTTGTGGCCAAACTaGTCCTCGTCACACACGGAG +
Preference number: 5 (lower is better)
Translates to: GPERAHIQTLKPRDSSSVSLWPN*SSSHTE
Trigger: CTCCGTGTGTGACGAGGACAAGTTTGGCCACAACGA...TACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 90 bp TGCCATGATACTGCAGTGTCTCATTCCACACAGGGTTCCGAGTGTTaGGCAGGGTCTTTGTACGAAGCTTGTTGGACTTGCTGGCTCCAG +
Preference number: 5 (lower is better)
Translates to: CHDTAVSHSTQGSEC*AGSLYEACWTCWLQ
Trigger: CTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACACTCGGAACCCTGTGTGGAATGAGACACTGCAGTATCATGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp ATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGGGGGCTGTTCCTTGTCATTaGACTGCAGAGGGCCATCAC +
Preference number: 5 (lower is better)
Translates to: IQTLKPRDSSSVAGPEVGAVPCH*TAEGHH
Trigger: GTGATGGCCCTCTGCAGTCAAATGACAAGGAACAGC...CCCCACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTTGTGGAAGGACCTGCTaGGGGAAACCTTTGAAGAAC +
Preference number: 5 (lower is better)
Translates to: PPGITGKRVEGRQNRGGSCGRTC*GKPLKN
Trigger: GTTCTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACA...AGAGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACGCAGGCTGCTGGGGCTaGGTCTTCTTTATAGGCATG +
Preference number: 5 (lower is better)
Translates to: GWTEAASMYNFCPPPGPYAGCWG*VFFIGM
Trigger: CATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGC...GTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CACATCCAGACCCTGAAGCCCAGAGATTCTTCTTCTGTAGCAGGACCTGAAGTGGCAGGCTGCTGGGGCTaGGTCTTCTTTATAGGCATG +
Preference number: 5 (lower is better)
Translates to: HIQTLKPRDSSSVAGPEVAGCWG*VFFIGM
Trigger: CATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGC...CACTTCAGGTCCTGCTACAGAAGAAGAATCTCTGGGCTTCAGGGTCTGGATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GAGTGCTTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGATAGCCAGGGTCACTaGGAGGAGCCTCTGTGCTCT +
Preference number: 5 (lower is better)
Translates to: ECFGWTEAASMYNFCPPPDSQGH*EEPLCS
Trigger: AGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATC...AGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAAGCACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CCACCAGGAATCACGGGGAAGAGAGTGGAAGGTAGACAGAACAGAGGTGGCTCTGTCTTTGTACGAAGCTaGTTGGACTTGCTGGCTCCA +
Preference number: 5 (lower is better)
Translates to: PPGITGKRVEGRQNRGGSVFVRS*LDLLAP
Trigger: TGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGAC...AGAGCCACCTCTGTTCTGTCTACCTTCCACTCTCTTCCCCGTGATTCCTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACTCGTTGTGGCCAAACTaGTCCTCGTCACACACGGAG +
Preference number: 5 (lower is better)
Translates to: GWTEAASMYNFCPPPGPYSLWPN*SSSHTE
Trigger: CTCCGTGTGTGACGAGGACAAGTTTGGCCACAACGA...GTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCTTCAAGCGCTCGCCTTaGGCCGAGATCCCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LILEESHFRETQESLRNSFKRSP*AEIPSW
Trigger: CCAGCTGGGGATCTCGGCCAAAGGCGAGCGCTTGAA...GCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CTACCCAACCTCTGGGGACCAGAGAGGGCTCACATCCAGACCCTGAAGCCCAGACAGCGCTCAATCTTCTaGTCTTTGTTCTTCAAACAC +
Preference number: 5 (lower is better)
Translates to: LPNLWGPERAHIQTLKPRQRSIF*SLFFKH
Trigger: GTGTTTGAAGAACAAAGACAAGAAGATTGAGCGCTG...TCTGGGCTTCAGGGTCTGGATGTGAGCCCTCTCTGGTCCCCAGAGGTTGGGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TTTCTCCTAAAGGTGACCATGACAGGGAAGTGGGCAAGTGGGCGGAGCATCAGAGTTCTCGTTCTGCAGTaGGTGCCAGCGCTCAATCTT +
Preference number: 5 (lower is better)
Translates to: FLLKVTMTGKWASGRSIRVLVLQ*VPALNL
Trigger: AAGATTGAGCGCTGGCACCAACTGCAGAACGAGAAC...TCTGATGCTCCGCCCACTTGCCCACTTCCCTGTCATGGTCACCTTTAGGAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTGCCTGCAGCTGTTCCTaGTCATTTGACTGCAGAGGG +
Preference number: 5 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPACSCS*SFDCRG
Trigger: CCCTCTGCAGTCAAATGACAAGGAACAGCTGCAGGC...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp AATCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGGGATCTGCCAAGCCATaGGAATCCATGGGCTTCAGT +
Preference number: 5 (lower is better)
Translates to: NLFVNVSPHPLPNLWGPEGSAKP*ESMGFS
Trigger: ACTGAAGCCCATGGATTCCAATGGCTTGGCAGATCC...CTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACTTTGTACGAAGCTTGTaGGACTTGCTGGCTCCAGGC +
Preference number: 5 (lower is better)
Translates to: GWTEAASMYNFCPPPGPYFVRSL*DLLAPG
Trigger: GCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAA...GTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp AGTAGAGGAAGGATAGAAGCATGGGGTCCAGGAGCAAGTCCCCTCATACACAGATTTGTACGAAGCTTGTaGGACTTGCTGGCTCCAGGC +
Preference number: 5 (lower is better)
Translates to: SRGRIEAWGPGASPLIHRFVRSL*DLLAPG
Trigger: GCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAA...TCTGTGTATGAGGGGACTTGCTCCTGGACCCCATGCTTCTATCCTTCCTCTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACGTTCTCGTTCTGCAGTaGGTGCCAGCGCTCAATCTT +
Preference number: 5 (lower is better)
Translates to: GWTEAASMYNFCPPPGPYVLVLQ*VPALNL
Trigger: AAGATTGAGCGCTGGCACCAACTGCAGAACGAGAAC...GTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS TCA 90 bp GAGATCCTTAGTGTCTTCCTCTGCATGTCCTCCTCTGTAATGCCATaGTACTGCAGTGTCTCATTCCACACAGGGTTCCGAGTGTTGCGC +
Preference number: 5 (lower is better)
Translates to: EILSVFLCMSSSVMP*YCSVSFHTGFRVLR
Trigger: GCGCAACACTCGGAACCCTGTGTGGAATGAGACACTGCAGTATCATGGCATTACAGAGGAGGACATGCAGAGGAAGACACTAAGGATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTGCTGTTCCTTGTCATTaGACTGCAGAGGGCCATCAC +
Preference number: 5 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPAVPCH*TAEGHH
Trigger: GTGATGGCCCTCTGCAGTCAAATGACAAGGAACAGC...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGCAAAACTATCAAGATGGGAAAAACCAGACTTGCCTCTCATGTGAGGAAGATGACCGGATGCGGACGGTaGTTGGAGGTCTCAACCCCA +
Preference number: 5 (lower is better)
Translates to: GKTIKMGKTRLASHVRKMTGCGR*LEVSTP
Trigger: TGGGGTTGAGACCTCCAACAACCGTCCGCATCCGGT...CATCTTCCTCACATGAGAGGCAAGTCTGGTTTTTCCCATCTTGATAGTTTTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACATGTGGAAGGACCTGCTaGGGGAAACCTTTGAAGAAC +
Preference number: 5 (lower is better)
Translates to: DGQRQPQCIISALLLVLTCGRTC*GKPLKN
Trigger: GTTCTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACA...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GAGTGCTTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTTGTGGAAGGACCTGCTaGGGGAAACCTTTGAAGAAC +
Preference number: 5 (lower is better)
Translates to: ECFGWTEAASMYNFCPPPCGRTC*GKPLKN
Trigger: GTTCTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACA...AGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAAGCACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTGCAGGCTGCTGGGGCTaGGTCTTCTTTATAGGCATG +
Preference number: 5 (lower is better)
Translates to: QCIISALLLVLTTYGFTSAGCWG*VFFIGM
Trigger: CATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGC...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACCAGGTTGCTGTTGTCTaGGTCATAGAGAAGGCTGAA +
Preference number: 5 (lower is better)
Translates to: GWTEAASMYNFCPPPGPYQVAVV*VIEKAE
Trigger: TTCAGCCTTCTCTATGACCAAGACAACAGCAACCTG...GTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp AATCTCTTTGTAAATGTCTCCCCACACCCACTACCCAACCTCTGGGGACCAGAGCAGGTTGCTGTTGTCTaGGTCATAGAGAAGGCTGAA +
Preference number: 5 (lower is better)
Translates to: NLFVNVSPHPLPNLWGPEQVAVV*VIEKAE
Trigger: TTCAGCCTTCTCTATGACCAAGACAACAGCAACCTG...CTCTGGTCCCCAGAGGTTGGGTAGTGGGTGTGGGGAGACATTTACAAAGAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GAGTTACTGAGAGCAGGGTGCATCTCAAGAGATGTTGGAAGGAACAAGCAAGACTTTGTACGAAGCTTGTaGGACTTGCTGGCTCCAGGC +
Preference number: 5 (lower is better)
Translates to: ELLRAGCISRDVGRNKQDFVRSL*DLLAPG
Trigger: GCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAA...GTCTTGCTTGTTCCTTCCAACATCTCTTGAGATGCACCCTGCTCTCAGTAACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAGTCTTTGTACGAAGCTaGTTGGACTTGCTGGCTCCA +
Preference number: 5 (lower is better)
Translates to: DGQRQPQCIISALLLVLTVFVRS*LDLLAP
Trigger: TGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGAC...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TTTGGATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTGTTGCGCAGGGTCTTaGTACGAAGCTTGTTGGACT +
Preference number: 5 (lower is better)
Translates to: FGWTEAASMYNFCPPPGPCCAGS*YEACWT
Trigger: AGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACA...AGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGCGCTCCAGGCAGATGTaGAAGTTTTTCCTCTGGTTA +
Preference number: 5 (lower is better)
Translates to: EAASMYNFCPPPGPYNLWRSRQM*KFFLWL
Trigger: TAACCAGAGGAAAAACTTCAACATCTGCCTGGAGCG...CCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACACGCTCCAGGCAGATGTaGAAGTTTTTCCTCTGGTTA +
Preference number: 5 (lower is better)
Translates to: DGQRQPQCIISALLLVLTRSRQM*KFFLWL
Trigger: TAACCAGAGGAAAAACTTCAACATCTGCCTGGAGCG...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACAACCTATGGGTTCACCAGTCGAGCAATCACTCTGTaGATGATCTCCTTCTCCTCG +
Preference number: 5 (lower is better)
Translates to: QCIISALLLVLTTYGFTSRAITL*MISFSS
Trigger: CGAGGAGAAGGAGATCATCAACAGAGTGATTGCTCG...ACTGGTGAACCCATAGGTTGTAAGGACCAGGAGGAGGGCAGAAATTATACATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp AGCCTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACCAGGTTGCTGTTGTCTaGGTCATAGAGAAGGCTGAA +
Preference number: 5 (lower is better)
Translates to: SLILEESHFRETQESLRNQVAVV*VIEKAE
Trigger: TTCAGCCTTCTCTATGACCAAGACAACAGCAACCTG...GTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp GATGGACAGAGGCAGCCTCAATGTATAATTTCTGCCCTCCTCCTGGTCCTTACACAGCGCTCAATCTTCTaGTCTTTGTTCTTCAAACAC +
Preference number: 5 (lower is better)
Translates to: DGQRQPQCIISALLLVLTQRSIF*SLFFKH
Trigger: GTGTTTGAAGAACAAAGACAAGAAGATTGAGCGCTG...TGTAAGGACCAGGAGGAGGGCAGAAATTATACATTGAGGCTGCCTCTGTCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TCTGGATTTGTCATGGACCAAGAGAGTTCTGACCTAATTAAAGCTCTAAATACGGGATCTGCCAAGCCATaGGAATCCATGGGCTTCAGT +
Preference number: 5 (lower is better)
Translates to: SGFVMDQESSDLIKALNTGSAKP*ESMGFS
Trigger: ACTGAAGCCCATGGATTCCAATGGCTTGGCAGATCC...CGTATTTAGAGCTTTAATTAGGTCAGAACTCTCTTGGTCCATGACAAATCCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp CTGATTCTAGAAGAGAGTCATTTCAGGGAAACACAAGAGTCCCTCAGGAACAGCCAGCGCTCAATCTTCTaGTCTTTGTTCTTCAAACAC +
Preference number: 5 (lower is better)
Translates to: LILEESHFRETQESLRNSQRSIF*SLFFKH
Trigger: GTGTTTGAAGAACAAAGACAAGAAGATTGAGCGCTG...GCTGTTCCTGAGGGACTCTTGTGTTTCCCTGAAATGACTCTCTTCTAGAATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS-3UTR CAA 90 bp TCTGGATTTGTCATGGACCAAGAGAGTTCTGACCTAATTAAAGCTCTAAATACGTGTTGCGCAGGGTCTTaGTACGAAGCTTGTTGGACT +
Preference number: 5 (lower is better)
Translates to: SGFVMDQESSDLIKALNTCCAGS*YEACWT
Trigger: AGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACA...CGTATTTAGAGCTTTAATTAGGTCAGAACTCTCTTGGTCCATGACAAATCCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079204.9
ENSMUST00000202406.4
CDS GCA 72 bp TCTGCTCCGGAAAGCGTCCTGGCCCAGGAGTGGCCCTaGTGCCCCCAGGGGGCCCTGGCTGCACCGGCTGAG +
Preference number: 6 (lower is better)
Translates to: SAPESVLAQEWP*CPQGALAAPAE
Trigger: CTCAGCCGGTGCAGCCAGGGCCCCCTGGGGGCAGCAGGGCCACTCCTGGGCCAGGACGCTTTCCGGAGCAGA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp CTCCTCCTCCGCAGGTGGTGGCTGGCGAGCAGGGGCTaGCTGGGAATAGGGGGCTGCAGTGTGCGGCGCTGC +
Preference number: 6 (lower is better)
Translates to: LLLRRWWLASRG*LGIGGCSVRRC
Trigger: GCAGCGCCGCACACTGCAGCCCCCTATTCCCAGGCAGCCCCTGCTCGCCAGCCACCACCTGCGGAGGAGGAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp TGGAGGAGCCTCTGTGCTCTGCTCCGGAAAGCGTCCTaGCCCAGGAGTGGCCCTGCTGCCCCCAGGGGGCCC +
Preference number: 6 (lower is better)
Translates to: WRSLCALLRKAS*PRSGPAAPRGP
Trigger: GGGCCCCCTGGGGGCAGCAGGGCCACTCCTGGGCCAGGACGCTTTCCGGAGCAGAGCACAGAGGCTCCTCCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp CCAGCCCTCAGAATCCCGGGCGGCTGTACTCATCCGTaGCTCAGAGGCCCTACGCGTGGGAGGCCCATGGCT +
Preference number: 6 (lower is better)
Translates to: PALRIPGGCTHP*LRGPTRGRPMA
Trigger: AGCCATGGGCCTCCCACGCGTAGGGCCTCTGAGGCACGGATGAGTACAGCCGCCCGGGATTCTGAGGGCTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp GCTGGGCTACGGCTGGTGTCTCCAGTACCCCCACCATaGGCATGGTCCCAGCCCTCAGAATCCCGGGCGGCT +
Preference number: 6 (lower is better)
Translates to: AGLRLVSPVPPP*AWSQPSESRAA
Trigger: AGCCGCCCGGGATTCTGAGGGCTGGGACCATGCCCATGGTGGGGGTACTGGAGACACCAGCCGTAGCCCAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 90 bp TCTCCTCTCGGGCTGGGGCGACAGCCCCTGGATAGCCAGGGTCACTaGGAGGAGCCTCTGTGCTCTGCTCCGGAAAGCGTCCTGGCCCAG +
Preference number: 6 (lower is better)
Translates to: SPLGLGRQPLDSQGH*EEPLCSAPESVLAQ
Trigger: CTGGGCCAGGACGCTTTCCGGAGCAGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATCCAGGGGCTGTCGCCCCAGCCCGAGAGGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp CTGGCTGGATGCCTGGACTCAGGTGTAGGCTGCTCCTaGGTGGCCGGTTCACCAGCAGGCTGCTGGGGCTTG +
Preference number: 6 (lower is better)
Translates to: LAGCLDSGVGCS*VAGSPAGCWGL
Trigger: CAAGCCCCAGCAGCCTGCTGGTGAACCGGCCACCCAGGAGCAGCCTACACCTGAGTCCAGGCATCCAGCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp CCCTGGGGGCCTCCTGTCCTCCATGTCACCTCGAGCTaGAGCCCTGGCTGGATGCCTGGACTCAGGTGTAGG +
Preference number: 6 (lower is better)
Translates to: PWGPPVLHVTSS*SPGWMPGLRCR
Trigger: CCTACACCTGAGTCCAGGCATCCAGCCAGGGCTCCAGCTCGAGGTGACATGGAGGACAGGAGGCCCCCAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp ATCCGTGCCTCAGAGGCCCTACGCGTGGGAGGCCCATaGCTTCCTCTCCCAGGAGCAGAGGTGAGGTCAGGG +
Preference number: 6 (lower is better)
Translates to: IRASEALRVGGP*LPLPGAEVRSG
Trigger: CCCTGACCTCACCTCTGCTCCTGGGAGAGGAAGCCATGGGCCTCCCACGCGTAGGGCCTCTGAGGCACGGAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp GGCTGGGGCGACAGCCCCTGGATAGCCAGGGTCACTTaGAGGAGCCTCTGTGCTCTGCTCCGGAAAGCGTCC +
Preference number: 6 (lower is better)
Translates to: GWGDSPWIARVT*RSLCALLRKAS
Trigger: GGACGCTTTCCGGAGCAGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATCCAGGGGCTGTCGCCCCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp CTACGGCTGGTGTCTCCAGTACCCCCACCATGGGCATaGTCCCAGCCCTCAGAATCCCGGGCGGCTGTACTC +
Preference number: 6 (lower is better)
Translates to: LRLVSPVPPPWA*SQPSESRAAVL
Trigger: GAGTACAGCCGCCCGGGATTCTGAGGGCTGGGACCATGCCCATGGTGGGGGTACTGGAGACACCAGCCGTAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp ATAGAGAGCCATGCCACGGGCCGACCCGGTGGTCCCTaGTCTCTTCATCGGGATCACCCGCTCCAGGCAGAT +
Preference number: 6 (lower is better)
Translates to: IESHATGRPGGP*SLHRDHPLQAD
Trigger: ATCTGCCTGGAGCGGGTGATCCCGATGAAGAGAGCAGGGACCACCGGGTCGGCCCGTGGCATGGCTCTCTAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 90 bp GTAGGCTGCTCCTGGGTGGCCGGTTCACCAGCAGGCTGCTGGGGCTaGGTCTTCTTTATAGGCATGGGCTGTGGAAGGACCTGCTTGGGG +
Preference number: 6 (lower is better)
Translates to: VGCSWVAGSPAGCWG*VFFIGMGCGRTCLG
Trigger: CCCCAAGCAGGTCCTTCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACCGGCCACCCAGGAGCAGCCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp GGCTGCTCCTGGGTGGCCGGTTCACCAGCAGGCTGCTaGGGCTTGGTCTTCTTTATAGGCATGGGCTGTGGA +
Preference number: 6 (lower is better)
Translates to: GCSWVAGSPAGC*GLVFFIGMGCG
Trigger: TCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACCGGCCACCCAGGAGCAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 90 bp ATGAGGCCGCCCTGCTGCGTGCTGTACATGAGGGACACCAGGATCTaGCCCCGTTCCTCTATATCGCCGATCCGCTCTACCTGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: MRPPCCVLYMRDTRI*PRSSISPIRSTCSS
Trigger: GGAGGAGCAGGTAGAGCGGATCGGCGATATAGAGGAACGGGGCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 72 bp TCCTGGGTGGCCGGTTCACCAGCAGGCTGCTGGGGCTaGGTCTTCTTTATAGGCATGGGCTGTGGAAGGACC +
Preference number: 6 (lower is better)
Translates to: SWVAGSPAGCWG*VFFIGMGCGRT
Trigger: GGTCCTTCCACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACCGGCCACCCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp TGTCAGTTCTTCCTGCTTCCTCTGCCTGTCGGTCTGTaGTCCAGGATGGACGGACCATCCTGCCTGCAGCTG +
Preference number: 6 (lower is better)
Translates to: CQFFLLPLPVGL*SRMDGPSCLQL
Trigger: CAGCTGCAGGCAGGATGGTCCGTCCATCCTGGAGCACAGACCGACAGGCAGAGGAAGCAGGAAGAACTGACA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079204.9
ENSMUST00000200792.2
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp CCGAGCCCAGCATACCCAGCTGTTCCCCACACAGAATaGAGCGGTTCACGCCATCTCCAGCCACATTCTTCC +
Preference number: 6 (lower is better)
Translates to: PSPAYPAVPHTE*SGSRHLQPHSS
Trigger: GGAAGAATGTGGCTGGAGATGGCGTGAACCGCTGCATTCTGTGTGGGGAACAGCTGGGTATGCTGGGCTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp ACACAGCGGATGATTCCCACAATGAGGCCGCCCTGCTaGGTGCTGTACATGAGGGACACCAGGATCTTGCCC +
Preference number: 6 (lower is better)
Translates to: TQRMIPTMRPPC*VLYMRDTRILP
Trigger: GGGCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCATTGTGGGAATCATCCGCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp TCCTGCTTCCTCTGCCTGTCGGTCTGTGCTCCAGGATaGACGGACCATCCTGCCTGCAGCTGTTCCTTGTCA +
Preference number: 6 (lower is better)
Translates to: SCFLCLSVCAPG*TDHPACSCSLS
Trigger: TGACAAGGAACAGCTGCAGGCAGGATGGTCCGTCCATCCTGGAGCACAGACCGACAGGCAGAGGAAGCAGGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079204.9
ENSMUST00000200792.2
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 72 bp CCCTGCTGCGTGCTGTACATGAGGGACACCAGGATCTaGCCCCGTTCCTCTATATCGCCGATCCGCTCTACC +
Preference number: 6 (lower is better)
Translates to: PCCVLYMRDTRI*PRSSISPIRST
Trigger: GGTAGAGCGGATCGGCGATATAGAGGAACGGGGCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 90 bp GTCTGTGCTCCAGGATGGACGGACCATCCTGCCTGCAGCTGTTCCTaGTCATTTGACTGCAGAGGGCCATCACCAGGGTACATCCATCGG +
Preference number: 6 (lower is better)
Translates to: VCAPGWTDHPACSCS*SFDCRGPSPGYIHR
Trigger: CCGATGGATGTACCCTGGTGATGGCCCTCTGCAGTCAAATGACAAGGAACAGCTGCAGGCAGGATGGTCCGTCCATCCTGGAGCACAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079204.9
ENSMUST00000200792.2
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp AGCGCTTCCAGACCTCTCTCTGCTCAAGGCAGATCTTaGAGAGCCATACCGGATGCGGACGGTTGTTGGAGG +
Preference number: 6 (lower is better)
Translates to: SASRPLSAQGRS*RAIPDADGCWR
Trigger: CCTCCAACAACCGTCCGCATCCGGTATGGCTCTGCAAGATCTGCCTTGAGCAGAGAGAGGTCTGGAAGCGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp TGCACACAGCGGATGATTCCCACAATGAGGCCGCCCTaGTGCGTGCTGTACATGAGGGACACCAGGATCTTG +
Preference number: 6 (lower is better)
Translates to: CTQRMIPTMRPP*CVLYMRDTRIL
Trigger: CAAGATCCTGGTGTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCATTGTGGGAATCATCCGCTGTGTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp GACGGTCCACCAGGCGCCCAATGCGTTCCTGTTCCATaGCTTCCATCTTCTCTGCCCGAGCAATCACTCTGT +
Preference number: 6 (lower is better)
Translates to: DGPPGAQCVPVP*LPSSLPEQSLC
Trigger: ACAGAGTGATTGCTCGGGCAGAGAAGATGGAAGCCATGGAACAGGAACGCATTGGGCGCCTGGTGGACCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 72 bp GAGCGCTTCCAGACCTCTCTCTGCTCAAGGCAGATCTaGCAGAGCCATACCGGATGCGGACGGTTGTTGGAG +
Preference number: 6 (lower is better)
Translates to: ERFQTSLCSRQI*QSHTGCGRLLE
Trigger: CTCCAACAACCGTCCGCATCCGGTATGGCTCTGCAAGATCTGCCTTGAGCAGAGAGAGGTCTGGAAGCGCTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS TCA 72 bp GCATGGGCTGTGGAAGGACCTGCTTGGGGAAACCTTTaGAGAACCATGCTCCTGAGCGCTTCCAGACCTCTC +
Preference number: 6 (lower is better)
Translates to: AWAVEGPAWGNL*RTMLLSASRPL
Trigger: GAGAGGTCTGGAAGCGCTCAGGAGCATGGTTCTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACAGCCCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp CTCTGCTCAAGGCAGATCTTGCAGAGCCATACCGGATaGGGACGGTTGTTGGAGGTCTCAACCCCACACTTG +
Preference number: 6 (lower is better)
Translates to: LCSRQILQSHTG*GRLLEVSTPHL
Trigger: CAAGTGTGGGGTTGAGACCTCCAACAACCGTCCGCATCCGGTATGGCTCTGCAAGATCTGCCTTGAGCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 72 bp GGACGGACCATCCTGCCTGCAGCTGTTCCTTGTCATTaGACTGCAGAGGGCCATCACCAGGGTACATCCATC +
Preference number: 6 (lower is better)
Translates to: GRTILPAAVPCH*TAEGHHQGTSI
Trigger: GATGGATGTACCCTGGTGATGGCCCTCTGCAGTCAAATGACAAGGAACAGCTGCAGGCAGGATGGTCCGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079204.9
ENSMUST00000200792.2
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 72 bp GGCATGGGCTGTGGAAGGACCTGCTTGGGGAAACCTTaGAAGAACCATGCTCCTGAGCGCTTCCAGACCTCT +
Preference number: 6 (lower is better)
Translates to: GMGCGRTCLGKP*KNHAPERFQTS
Trigger: AGAGGTCTGGAAGCGCTCAGGAGCATGGTTCTTCAAAGGTTTCCCCAAGCAGGTCCTTCCACAGCCCATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp AAGAACCATGCTCCTGAGCGCTTCCAGACCTCTCTCTaGTCAAGGCAGATCTTGCAGAGCCATACCGGATGC +
Preference number: 6 (lower is better)
Translates to: KNHAPERFQTSL*SRQILQSHTGC
Trigger: GCATCCGGTATGGCTCTGCAAGATCTGCCTTGAGCAGAGAGAGGTCTGGAAGCGCTCAGGAGCATGGTTCTT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 72 bp CATTCCACACAGGGTTCCGAGTGTTGCGCAGGGTCTTaGTACGAAGCTTGTTGGACTTGCTGGCTCCAGGCA +
Preference number: 6 (lower is better)
Translates to: HSTQGSECCAGS*YEACWTCWLQA
Trigger: TGCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACACTCGGAACCCTGTGTGGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 90 bp AGCCATACCGGATGCGGACGGTTGTTGGAGGTCTCAACCCCACACTaGGTGCAGACATTCTTCTTACAGTCTTCACACACGACACAGGCC +
Preference number: 6 (lower is better)
Translates to: SHTGCGRLLEVSTPH*VQTFFLQSSHTTQA
Trigger: GGCCTGTGTCGTGTGTGAAGACTGTAAGAAGAATGTCTGCACCAAGTGTGGGGTTGAGACCTCCAACAACCGTCCGCATCCGGTATGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp ACTGCAGTGTCTCATTCCACACAGGGTTCCGAGTGTTaGGCAGGGTCTTTGTACGAAGCTTGTTGGACTTGC +
Preference number: 6 (lower is better)
Translates to: TAVSHSTQGSEC*AGSLYEACWTC
Trigger: GCAAGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACACTCGGAACCCTGTGTGGAATGAGACACTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp TGCGCAGGGTCTTTGTACGAAGCTTGTTGGACTTGCTaGCTCCAGGCAGCAGATGAAGCTTCACATAGGGAT +
Preference number: 6 (lower is better)
Translates to: CAGSLYEACWTC*LQAADEASHRD
Trigger: ATCCCTATGTGAAGCTTCATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGACCCTGCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp TCAAACACTCATACCAATGTTTCAAGCGCTCGCCTTTaGCCGAGATCCCCAGCTGGCAGCCTCCGATGTAAT +
Preference number: 6 (lower is better)
Translates to: SNTHTNVSSARL*PRSPAGSLRCN
Trigger: ATTACATCGGAGGCTGCCAGCTGGGGATCTCGGCCAAAGGCGAGCGCTTGAAACATTGGTATGAGTGTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS TCA 72 bp ACTGCAGGTTGCTGTTGTCTTGGTCATAGAGAAGGCTaGATTCCAGGGCACCCAGTGTGGTTGCTTCATCAG +
Preference number: 6 (lower is better)
Translates to: TAGCCCLGHREG*IPGHPVWLLHQ
Trigger: CTGATGAAGCAACCACACTGGGTGCCCTGGAATTCAGCCTTCTCTATGACCAAGACAACAGCAACCTGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS GCA 72 bp CCCAATGCGTTCCTGTTCCATGGCTTCCATCTTCTCTaGCCGAGCAATCACTCTGTTGATGATCTCCTTCTC +
Preference number: 6 (lower is better)
Translates to: PNAFLFHGFHLL*PSNHSVDDLLL
Trigger: GAGAAGGAGATCATCAACAGAGTGATTGCTCGGGCAGAGAAGATGGAAGCCATGGAACAGGAACGCATTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CCA 72 bp GATGCGGACGGTTGTTGGAGGTCTCAACCCCACACTTaGTGCAGACATTCTTCTTACAGTCTTCACACACGA +
Preference number: 6 (lower is better)
Translates to: DADGCWRSQPHT*CRHSSYSLHTR
Trigger: TCGTGTGTGAAGACTGTAAGAAGAATGTCTGCACCAAGTGTGGGGTTGAGACCTCCAACAACCGTCCGCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 72 bp TACTGCAGTGTCTCATTCCACACAGGGTTCCGAGTGTaGCGCAGGGTCTTTGTACGAAGCTTGTTGGACTTG +
Preference number: 6 (lower is better)
Translates to: YCSVSFHTGFRV*RRVFVRSLLDL
Trigger: CAAGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACACTCGGAACCCTGTGTGGAATGAGACACTGCAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS TCA 72 bp AGTGTCTTCCTCTGCATGTCCTCCTCTGTAATGCCATaGTACTGCAGTGTCTCATTCCACACAGGGTTCCGA +
Preference number: 6 (lower is better)
Translates to: SVFLCMSSSVMP*YCSVSFHTGFR
Trigger: TCGGAACCCTGTGTGGAATGAGACACTGCAGTATCATGGCATTACAGAGGAGGACATGCAGAGGAAGACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4
CDS CAA 72 bp ATGTTGAAGTTTTTCCTCTGGTTAGCCTTCAGCTTCTaGAGCGAGAACCTGGTCTCACCAATGAACTCGTTG +
Preference number: 6 (lower is better)
Translates to: MLKFFLWLAFSF*SENLVSPMNSL
Trigger: CAACGAGTTCATTGGTGAGACCAGGTTCTCGCTCAAGAAGCTGAAGGCTAACCAGAGGAAAAACTTCAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079204.9
ENSMUST00000202326.4
ENSMUST00000202406.4